RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 TMTC2Q8N394 836 aa18.16■□□□□ 0.5
UPF1-206ENST00000598471 SLC44A5Q8NCS7 719 aa18.16■□□□□ 0.5
UPF1-206ENST00000598471 CHMP4CQ96CF2 233 aa18.16■□□□□ 0.5
UPF1-206ENST00000598471 PITPNM2Q9BZ72 1349 aa18.16■□□□□ 0.5
UPF1-206ENST00000598471 LIFRP42702 1097 aa18.15■□□□□ 0.5
UPF1-206ENST00000598471 TFAP4Q01664 338 aa18.15■□□□□ 0.5
UPF1-206ENST00000598471 WTAPQ15007 396 aa18.15■□□□□ 0.5
UPF1-206ENST00000598471 FAM47AQ5JRC9 791 aa18.15■□□□□ 0.5
UPF1-206ENST00000598471 ANGEL2Q5VTE6 544 aaKnown RBP18.15■□□□□ 0.5
UPF1-206ENST00000598471 NFXL1Q6ZNB6 911 aa18.15■□□□□ 0.5
UPF1-206ENST00000598471 USP50Q70EL3 339 aaPredicted RBP18.15■□□□□ 0.5
UPF1-206ENST00000598471 HOOK2Q96ED9 719 aa18.15■□□□□ 0.5
UPF1-206ENST00000598471 CCDC17Q96LX7 622 aa18.15■□□□□ 0.5
UPF1-206ENST00000598471 ZSCAN10Q96SZ4 725 aaPredicted RBP18.15■□□□□ 0.5
UPF1-206ENST00000598471 TMEM39BQ9GZU3 492 aa18.15■□□□□ 0.5
UPF1-206ENST00000598471 GGA3Q9NZ52 723 aa18.15■□□□□ 0.5
UPF1-206ENST00000598471 PPP2R3BQ9Y5P8 575 aa18.15■□□□□ 0.5
UPF1-206ENST00000598471 CCDC69A6NI79 296 aa18.14■□□□□ 0.49
UPF1-206ENST00000598471 EPHX2P34913 555 aa18.14■□□□□ 0.49
UPF1-206ENST00000598471 SYNE3Q6ZMZ3 975 aa18.14■□□□□ 0.49
UPF1-206ENST00000598471 METTL16Q86W50 562 aaKnown RBP18.14■□□□□ 0.49
UPF1-206ENST00000598471 ZKSCAN3Q9BRR0 538 aa18.14■□□□□ 0.49
UPF1-206ENST00000598471 TAF1DQ9H5J8 278 aaPredicted RBP18.14■□□□□ 0.49
UPF1-206ENST00000598471 TPCN1Q9ULQ1 816 aa18.14■□□□□ 0.49
UPF1-206ENST00000598471 NAP1L2Q9ULW6 460 aaPredicted RBP18.14■□□□□ 0.49
UPF1-206ENST00000598471 TNKSO95271 1327 aa18.14■□□□□ 0.49
UPF1-206ENST00000598471 KLF18A0A0U1RQI7 1052 aa18.13■□□□□ 0.49
UPF1-206ENST00000598471 SHMT1P34896 483 aa18.13■□□□□ 0.49
UPF1-206ENST00000598471 SLC4A3P48751 1232 aa18.13■□□□□ 0.49
UPF1-206ENST00000598471 APOBRQ0VD83 1088 aa18.13■□□□□ 0.49
UPF1-206ENST00000598471 PPP4R3BQ5MIZ7 849 aa18.13■□□□□ 0.49
UPF1-206ENST00000598471 NEDD1Q8NHV4 660 aa18.13■□□□□ 0.49
UPF1-206ENST00000598471 IGDCC4Q8TDY8 1250 aa18.13■□□□□ 0.49
UPF1-206ENST00000598471 DCPSQ96C86 337 aaKnown RBP18.13■□□□□ 0.49
UPF1-206ENST00000598471 ZNF274Q96GC6 653 aaPredicted RBP18.13■□□□□ 0.49
UPF1-206ENST00000598471 DEFB129Q9H1M3 183 aa18.13■□□□□ 0.49
UPF1-206ENST00000598471 XPO5Q9HAV4 1204 aaKnown RBP eCLIP18.13■□□□□ 0.49
UPF1-206ENST00000598471 LY9Q9HBG7 655 aa18.13■□□□□ 0.49
UPF1-206ENST00000598471 TCP11L1Q9NUJ3 509 aa18.13■□□□□ 0.49
UPF1-206ENST00000598471 ASTN2O75129 1339 aaPredicted RBP18.13■□□□□ 0.49
UPF1-206ENST00000598471 PLIN4Q96Q06 1357 aa18.13■□□□□ 0.49
UPF1-206ENST00000598471 WDR90Q96KV7 1748 aa18.12■□□□□ 0.49
UPF1-206ENST00000598471 SCN4AP35499 1836 aa18.12■□□□□ 0.49
UPF1-206ENST00000598471 TBC1D12O60347 775 aa18.12■□□□□ 0.49
UPF1-206ENST00000598471 POTEIP0CG38 1075 aa18.12■□□□□ 0.49
UPF1-206ENST00000598471 POTEJP0CG39 1038 aa18.12■□□□□ 0.49
UPF1-206ENST00000598471 HIRAP54198 1017 aaPredicted RBP18.12■□□□□ 0.49
UPF1-206ENST00000598471 EVCP57679 992 aa18.12■□□□□ 0.49
UPF1-206ENST00000598471 CERKLQ49MI3 558 aaPredicted RBP18.12■□□□□ 0.49
UPF1-206ENST00000598471 IFIT1BQ5T764 474 aaKnown RBP18.12■□□□□ 0.49
UPF1-206ENST00000598471 PNMA8AQ86V59 439 aaPredicted RBP18.12■□□□□ 0.49
UPF1-206ENST00000598471 SGMS1Q86VZ5 419 aa18.12■□□□□ 0.49
UPF1-206ENST00000598471 NKX2-3Q8TAU0 364 aa18.12■□□□□ 0.49
UPF1-206ENST00000598471 ZC3H15Q8WU90 426 aaKnown RBP18.12■□□□□ 0.49
UPF1-206ENST00000598471 LARP6Q9BRS8 491 aaKnown RBP18.12■□□□□ 0.49
UPF1-206ENST00000598471 SLKQ9H2G2 1235 aaPredicted RBP18.12■□□□□ 0.49
UPF1-206ENST00000598471 SIPA1L1O43166 1804 aa18.12■□□□□ 0.49
UPF1-206ENST00000598471 GOLGA8BA8MQT2 603 aa18.11■□□□□ 0.49
UPF1-206ENST00000598471 CUL4AQ13619 759 aa18.11■□□□□ 0.49
UPF1-206ENST00000598471 SEC23AQ15436 765 aa18.11■□□□□ 0.49
UPF1-206ENST00000598471 ME3Q16798 604 aa18.11■□□□□ 0.49
UPF1-206ENST00000598471 TATDN1Q6P1N9 297 aa18.11■□□□□ 0.49
UPF1-206ENST00000598471 DGKHQ86XP1 1220 aa18.11■□□□□ 0.49
UPF1-206ENST00000598471 ENAHQ8N8S7 591 aaPredicted RBP18.11■□□□□ 0.49
UPF1-206ENST00000598471 DNAJC18Q9H819 358 aa18.11■□□□□ 0.49
UPF1-206ENST00000598471 GPHNQ9NQX3 736 aaPredicted RBP18.11■□□□□ 0.49
UPF1-206ENST00000598471 SLC12A7Q9Y666 1083 aa18.11■□□□□ 0.49
UPF1-206ENST00000598471 MPHOSPH10O00566 681 aaKnown RBP18.1■□□□□ 0.49
UPF1-206ENST00000598471 AKR1B1P15121 316 aa18.1■□□□□ 0.49
UPF1-206ENST00000598471 RCAN1P53805 252 aa18.1■□□□□ 0.49
UPF1-206ENST00000598471 DCAF15Q66K64 600 aa18.1■□□□□ 0.49
UPF1-206ENST00000598471 CATIPQ7Z7H3 387 aa18.1■□□□□ 0.49
UPF1-206ENST00000598471 SULF1Q8IWU6 871 aa18.1■□□□□ 0.49
UPF1-206ENST00000598471 INTS4Q96HW7 963 aaKnown RBP18.1■□□□□ 0.49
UPF1-206ENST00000598471 CABP5Q9NP86 173 aa18.1■□□□□ 0.49
UPF1-206ENST00000598471 ZSCAN21Q9Y5A6 473 aaPredicted RBP18.1■□□□□ 0.49
UPF1-206ENST00000598471 MYH8P13535 1937 aa18.1■□□□□ 0.49
UPF1-206ENST00000598471 FAM196BA6NMK8 535 aa18.09■□□□□ 0.49
UPF1-206ENST00000598471 ZBTB43O43298 467 aa18.09■□□□□ 0.49
UPF1-206ENST00000598471 DHX16O60231 1041 aaKnown RBP18.09■□□□□ 0.49
UPF1-206ENST00000598471 PFKFB2O60825 505 aa18.09■□□□□ 0.49
UPF1-206ENST00000598471 TOMM70O94826 608 aa18.09■□□□□ 0.49
UPF1-206ENST00000598471 LARGE1O95461 756 aa18.09■□□□□ 0.49
UPF1-206ENST00000598471 PDIA3P30101 505 aaKnown RBP18.09■□□□□ 0.49
UPF1-206ENST00000598471 STK3Q13188 491 aa18.09■□□□□ 0.49
UPF1-206ENST00000598471 EAPPQ56P03 285 aaPredicted RBP18.09■□□□□ 0.49
UPF1-206ENST00000598471 APOA5Q6Q788 366 aa18.09■□□□□ 0.49
UPF1-206ENST00000598471 CCDC83Q8IWF9 413 aa18.09■□□□□ 0.49
UPF1-206ENST00000598471 GTF3C6Q969F1 213 aa18.09■□□□□ 0.49
UPF1-206ENST00000598471 TEPSINQ96N21 525 aa18.09■□□□□ 0.49
UPF1-206ENST00000598471 KAT14Q9H8E8 782 aa18.09■□□□□ 0.49
UPF1-206ENST00000598471 PGAP2Q9UHJ9 254 aa18.09■□□□□ 0.49
UPF1-206ENST00000598471 BRPF3Q9ULD4 1205 aa18.09■□□□□ 0.49
UPF1-206ENST00000598471 CALM1P0DP23 149 aa18.08■□□□□ 0.48
UPF1-206ENST00000598471 CALM2P0DP24 149 aa18.08■□□□□ 0.48
UPF1-206ENST00000598471 CALM3P0DP25 149 aa18.08■□□□□ 0.48
UPF1-206ENST00000598471 METAP2P50579 478 aaKnown RBP eCLIP18.08■□□□□ 0.48
UPF1-206ENST00000598471 MAP3K10Q02779 954 aa18.08■□□□□ 0.48
UPF1-206ENST00000598471 ABCB5Q2M3G0 1257 aa18.08■□□□□ 0.48
UPF1-206ENST00000598471 SUPT20HL1Q3ZLR7 823 aa18.08■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms