RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	PXYLP1	Q8TE99	480 aa		12.87	□□□□□ -0.35
LSM4-205	ENST00000597776	DEFB118	Q96PH6	123 aa		12.87	□□□□□ -0.35
LSM4-205	ENST00000597776	WDR18	Q9BV38	432 aa		12.87	□□□□□ -0.35
LSM4-205	ENST00000597776	EXOC6B	Q9Y2D4	811 aa		12.87	□□□□□ -0.35
LSM4-205	ENST00000597776	RANBP2	P49792	3224 aa	Known RBP	12.87	□□□□□ -0.35
LSM4-205	ENST00000597776	SGPL1	O95470	568 aa		12.86	□□□□□ -0.35
LSM4-205	ENST00000597776	IRX3	P78415	501 aa	Predicted RBP	12.86	□□□□□ -0.35
LSM4-205	ENST00000597776	CHRDL2	Q6WN34	429 aa		12.86	□□□□□ -0.35
LSM4-205	ENST00000597776	AACS	Q86V21	672 aa		12.86	□□□□□ -0.35
LSM4-205	ENST00000597776	FOXP4	Q8IVH2	680 aa	Predicted RBP	12.86	□□□□□ -0.35
LSM4-205	ENST00000597776	MAGEB6	Q8N7X4	407 aa		12.86	□□□□□ -0.35
LSM4-205	ENST00000597776	ANTXR1	Q9H6X2	564 aa		12.86	□□□□□ -0.35
LSM4-205	ENST00000597776	TMOD4	Q9NZQ9	345 aa		12.86	□□□□□ -0.35
LSM4-205	ENST00000597776	ZBTB21	Q9ULJ3	1066 aa		12.86	□□□□□ -0.35
LSM4-205	ENST00000597776	DOCK3	Q8IZD9	2030 aa		12.85	□□□□□ -0.35
LSM4-205	ENST00000597776	TFRC	P02786	760 aa	Known RBP	12.85	□□□□□ -0.35
LSM4-205	ENST00000597776	HLA-DOA	P06340	250 aa		12.85	□□□□□ -0.35
LSM4-205	ENST00000597776	TRIM32	Q13049	653 aa		12.85	□□□□□ -0.35
LSM4-205	ENST00000597776	P2RX7	Q99572	595 aa	Known RBP	12.85	□□□□□ -0.35
LSM4-205	ENST00000597776	HTATIP2	Q9BUP3	242 aa		12.85	□□□□□ -0.35
LSM4-205	ENST00000597776	IL1RAPL2	Q9NP60	686 aa		12.85	□□□□□ -0.35
LSM4-205	ENST00000597776	PAK6	Q9NQU5	681 aa	Predicted RBP	12.85	□□□□□ -0.35
LSM4-205	ENST00000597776	MORF4L1	Q9UBU8	362 aa		12.85	□□□□□ -0.35
LSM4-205	ENST00000597776	GJD2	Q9UKL4	321 aa		12.85	□□□□□ -0.35
LSM4-205	ENST00000597776	USP17L10	C9JJH3	530 aa		12.84	□□□□□ -0.35
LSM4-205	ENST00000597776	GH2	P01242	217 aa		12.84	□□□□□ -0.35
LSM4-205	ENST00000597776	USP5	P45974	858 aa		12.84	□□□□□ -0.35
LSM4-205	ENST00000597776	HERVK_113	P62684	666 aa		12.84	□□□□□ -0.35
LSM4-205	ENST00000597776	DIEXF	Q68CQ4	756 aa	Known RBP	12.84	□□□□□ -0.35
LSM4-205	ENST00000597776	XRN2	Q9H0D6	950 aa	Known RBP eCLIP	12.84	□□□□□ -0.35
LSM4-205	ENST00000597776	TXNRD2	Q9NNW7	524 aa		12.84	□□□□□ -0.35
LSM4-205	ENST00000597776	ZBED9	Q6R2W3	1325 aa		12.84	□□□□□ -0.35
LSM4-205	ENST00000597776	TRIOBP	Q9H2D6	2365 aa		12.83	□□□□□ -0.36
LSM4-205	ENST00000597776	C19orf81	C9J6K1	198 aa		12.83	□□□□□ -0.36
LSM4-205	ENST00000597776	APBB1	O00213	710 aa		12.83	□□□□□ -0.36
LSM4-205	ENST00000597776	HMGCR	P04035	888 aa		12.83	□□□□□ -0.36
LSM4-205	ENST00000597776	HOXA7	P31268	230 aa	Predicted RBP	12.83	□□□□□ -0.36
LSM4-205	ENST00000597776	MAP3K12	Q12852	859 aa		12.83	□□□□□ -0.36
LSM4-205	ENST00000597776	ZYX	Q15942	572 aa	Known RBP	12.83	□□□□□ -0.36
LSM4-205	ENST00000597776	ERC1	Q8IUD2	1116 aa		12.83	□□□□□ -0.36
LSM4-205	ENST00000597776	DIS3L	Q8TF46	1054 aa	Known RBP	12.83	□□□□□ -0.36
LSM4-205	ENST00000597776	CRISPLD2	Q9H0B8	497 aa		12.83	□□□□□ -0.36
LSM4-205	ENST00000597776	BCL11A	Q9H165	835 aa		12.83	□□□□□ -0.36
LSM4-205	ENST00000597776	EMILIN3	Q9NT22	766 aa		12.83	□□□□□ -0.36
LSM4-205	ENST00000597776	RBM27	Q9P2N5	1060 aa	Known RBP	12.83	□□□□□ -0.36
LSM4-205	ENST00000597776	SZT2	Q5T011	3432 aa		12.83	□□□□□ -0.36
LSM4-205	ENST00000597776	PLXNB2	O15031	1838 aa		12.83	□□□□□ -0.36
LSM4-205	ENST00000597776	MYH1	P12882	1939 aa		12.82	□□□□□ -0.36
LSM4-205	ENST00000597776	IGSF3	O75054	1194 aa		12.82	□□□□□ -0.36
LSM4-205	ENST00000597776	POTEE	Q6S8J3	1075 aa		12.82	□□□□□ -0.36
LSM4-205	ENST00000597776	GPRC5A	Q8NFJ5	357 aa		12.82	□□□□□ -0.36
LSM4-205	ENST00000597776	RHPN1	Q8TCX5	695 aa		12.82	□□□□□ -0.36
LSM4-205	ENST00000597776	TRIB2	Q92519	343 aa		12.82	□□□□□ -0.36
LSM4-205	ENST00000597776	PAGR1	Q9BTK6	254 aa		12.82	□□□□□ -0.36
LSM4-205	ENST00000597776	GINM1	Q9NU53	330 aa		12.82	□□□□□ -0.36
LSM4-205	ENST00000597776	RBPJL	Q9UBG7	517 aa		12.82	□□□□□ -0.36
LSM4-205	ENST00000597776	CYP2B6	P20813	491 aa		12.81	□□□□□ -0.36
LSM4-205	ENST00000597776	EVX2	Q03828	476 aa		12.81	□□□□□ -0.36
LSM4-205	ENST00000597776	RAB3GAP1	Q15042	981 aa		12.81	□□□□□ -0.36
LSM4-205	ENST00000597776	TATDN1	Q6P1N9	297 aa		12.81	□□□□□ -0.36
LSM4-205	ENST00000597776	USP17L2	Q6R6M4	530 aa		12.81	□□□□□ -0.36
LSM4-205	ENST00000597776	CERS3	Q8IU89	383 aa		12.81	□□□□□ -0.36
LSM4-205	ENST00000597776	PAWR	Q96IZ0	340 aa	Known RBP	12.81	□□□□□ -0.36
LSM4-205	ENST00000597776	FEZ1	Q99689	392 aa		12.81	□□□□□ -0.36
LSM4-205	ENST00000597776	RIOK1	Q9BRS2	568 aa	Known RBP	12.81	□□□□□ -0.36
LSM4-205	ENST00000597776	PORCN	Q9H237	461 aa		12.81	□□□□□ -0.36
LSM4-205	ENST00000597776	SERPINB13	Q9UIV8	391 aa		12.81	□□□□□ -0.36
LSM4-205	ENST00000597776	NR2E3	Q9Y5X4	410 aa		12.81	□□□□□ -0.36
LSM4-205	ENST00000597776	DDX60L	Q5H9U9	1706 aa	Known RBP	12.81	□□□□□ -0.36
LSM4-205	ENST00000597776	EVI5	O60447	810 aa		12.8	□□□□□ -0.36
LSM4-205	ENST00000597776	PDE6A	P16499	860 aa		12.8	□□□□□ -0.36
LSM4-205	ENST00000597776	PLCD1	P51178	756 aa		12.8	□□□□□ -0.36
LSM4-205	ENST00000597776	ERVK-9	P63128	1117 aa		12.8	□□□□□ -0.36
LSM4-205	ENST00000597776	ERVK-24	P63145	666 aa		12.8	□□□□□ -0.36
LSM4-205	ENST00000597776		Q3C1V9	767 aa		12.8	□□□□□ -0.36
LSM4-205	ENST00000597776	ACER1	Q8TDN7	264 aa		12.8	□□□□□ -0.36
LSM4-205	ENST00000597776	EHD4	Q9H223	541 aa		12.8	□□□□□ -0.36
LSM4-205	ENST00000597776	HMX1	Q9NP08	348 aa	Predicted RBP	12.8	□□□□□ -0.36
LSM4-205	ENST00000597776	NAV1	Q8NEY1	1877 aa		12.79	□□□□□ -0.36
LSM4-205	ENST00000597776	MAGEB6P1	A0A0J9YX57	407 aa		12.79	□□□□□ -0.36
LSM4-205	ENST00000597776	GOLIM4	O00461	696 aa		12.79	□□□□□ -0.36
LSM4-205	ENST00000597776	SHMT1	P34896	483 aa		12.79	□□□□□ -0.36
LSM4-205	ENST00000597776	ABCB5	Q2M3G0	1257 aa		12.79	□□□□□ -0.36
LSM4-205	ENST00000597776	CERKL	Q49MI3	558 aa	Predicted RBP	12.79	□□□□□ -0.36
LSM4-205	ENST00000597776	HSP90AB4P	Q58FF6	505 aa		12.79	□□□□□ -0.36
LSM4-205	ENST00000597776	SLC9C2	Q5TAH2	1124 aa		12.79	□□□□□ -0.36
LSM4-205	ENST00000597776	TTC6	Q86TZ1	520 aa		12.79	□□□□□ -0.36
LSM4-205	ENST00000597776	SIRT2	Q8IXJ6	389 aa		12.79	□□□□□ -0.36
LSM4-205	ENST00000597776	SOCS4	Q8WXH5	440 aa		12.79	□□□□□ -0.36
LSM4-205	ENST00000597776	EDC3	Q96F86	508 aa	Known RBP	12.79	□□□□□ -0.36
LSM4-205	ENST00000597776	C12orf42	Q96LP6	360 aa		12.79	□□□□□ -0.36
LSM4-205	ENST00000597776	DNAJC2	Q99543	621 aa	Known RBP	12.79	□□□□□ -0.36
LSM4-205	ENST00000597776	NUDT12	Q9BQG2	462 aa		12.79	□□□□□ -0.36
LSM4-205	ENST00000597776	PRO3102	Q9H379	93 aa		12.79	□□□□□ -0.36
LSM4-205	ENST00000597776	COG6	Q9Y2V7	657 aa		12.79	□□□□□ -0.36
LSM4-205	ENST00000597776	RPTOR	Q8N122	1335 aa		12.79	□□□□□ -0.36
LSM4-205	ENST00000597776	ALPK3	Q96L96	1907 aa		12.78	□□□□□ -0.36
LSM4-205	ENST00000597776	CNMD	O75829	334 aa		12.78	□□□□□ -0.36
LSM4-205	ENST00000597776	POLR3D	P05423	398 aa	Predicted RBP	12.78	□□□□□ -0.36
LSM4-205	ENST00000597776	PRKAR2A	P13861	404 aa	Known RBP	12.78	□□□□□ -0.36

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