RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 TPCN1Q9ULQ1 816 aa17.89■□□□□ 0.45
TRIM28-209ENST00000597423 NAP1L2Q9ULW6 460 aaPredicted RBP17.89■□□□□ 0.45
TRIM28-209ENST00000597423 SLC12A7Q9Y666 1083 aa17.89■□□□□ 0.45
TRIM28-209ENST00000597423 SMIM22K7EJ46 135 aa17.88■□□□□ 0.45
TRIM28-209ENST00000597423 EGFRP00533 1210 aa17.88■□□□□ 0.45
TRIM28-209ENST00000597423 APOBRQ0VD83 1088 aa17.88■□□□□ 0.45
TRIM28-209ENST00000597423 CUL4AQ13619 759 aa17.88■□□□□ 0.45
TRIM28-209ENST00000597423 CERKLQ49MI3 558 aaPredicted RBP17.88■□□□□ 0.45
TRIM28-209ENST00000597423 IFIT1BQ5T764 474 aaKnown RBP17.88■□□□□ 0.45
TRIM28-209ENST00000597423 ANGEL2Q5VTE6 544 aaKnown RBP17.88■□□□□ 0.45
TRIM28-209ENST00000597423 SH3BP5LQ7L8J4 393 aa17.88■□□□□ 0.45
TRIM28-209ENST00000597423 ZC3H15Q8WU90 426 aaKnown RBP17.88■□□□□ 0.45
TRIM28-209ENST00000597423 DCPSQ96C86 337 aaKnown RBP17.88■□□□□ 0.45
TRIM28-209ENST00000597423 DEFB129Q9H1M3 183 aa17.88■□□□□ 0.45
TRIM28-209ENST00000597423 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.88■□□□□ 0.45
TRIM28-209ENST00000597423 TIAM2Q8IVF5 1701 aa17.88■□□□□ 0.45
TRIM28-209ENST00000597423 PITPNM2Q9BZ72 1349 aa17.88■□□□□ 0.45
TRIM28-209ENST00000597423 LAMA4Q16363 1823 aa17.87■□□□□ 0.45
TRIM28-209ENST00000597423 KLF18A0A0U1RQI7 1052 aa17.87■□□□□ 0.45
TRIM28-209ENST00000597423 EPHX2P34913 555 aa17.87■□□□□ 0.45
TRIM28-209ENST00000597423 EVX2Q03828 476 aa17.87■□□□□ 0.45
TRIM28-209ENST00000597423 ME3Q16798 604 aa17.87■□□□□ 0.45
TRIM28-209ENST00000597423 TATDN1Q6P1N9 297 aa17.87■□□□□ 0.45
TRIM28-209ENST00000597423 CATIPQ7Z7H3 387 aa17.87■□□□□ 0.45
TRIM28-209ENST00000597423 PNMA8AQ86V59 439 aaPredicted RBP17.87■□□□□ 0.45
TRIM28-209ENST00000597423 SLC44A5Q8NCS7 719 aa17.87■□□□□ 0.45
TRIM28-209ENST00000597423 TRPM4Q8TD43 1214 aa17.87■□□□□ 0.45
TRIM28-209ENST00000597423 ANKS1AQ92625 1134 aa17.87■□□□□ 0.45
TRIM28-209ENST00000597423 ZKSCAN3Q9BRR0 538 aa17.87■□□□□ 0.45
TRIM28-209ENST00000597423 LARP6Q9BRS8 491 aaKnown RBP17.87■□□□□ 0.45
TRIM28-209ENST00000597423 LY9Q9HBG7 655 aa17.87■□□□□ 0.45
TRIM28-209ENST00000597423 CABP5Q9NP86 173 aa17.87■□□□□ 0.45
TRIM28-209ENST00000597423 TNKSO95271 1327 aa17.87■□□□□ 0.45
TRIM28-209ENST00000597423 CNTNAP1P78357 1384 aa17.87■□□□□ 0.45
TRIM28-209ENST00000597423 PFKFB2O60825 505 aa17.86■□□□□ 0.45
TRIM28-209ENST00000597423 CALM1P0DP23 149 aa17.86■□□□□ 0.45
TRIM28-209ENST00000597423 CALM2P0DP24 149 aa17.86■□□□□ 0.45
TRIM28-209ENST00000597423 CALM3P0DP25 149 aa17.86■□□□□ 0.45
TRIM28-209ENST00000597423 PDIA3P30101 505 aaKnown RBP17.86■□□□□ 0.45
TRIM28-209ENST00000597423 SHMT1P34896 483 aa17.86■□□□□ 0.45
TRIM28-209ENST00000597423 RCAN1P53805 252 aa17.86■□□□□ 0.45
TRIM28-209ENST00000597423 COL9A3Q14050 684 aaPredicted RBP17.86■□□□□ 0.45
TRIM28-209ENST00000597423 PPP2R5BQ15173 497 aa17.86■□□□□ 0.45
TRIM28-209ENST00000597423 SUPT20HL1Q3ZLR7 823 aa17.86■□□□□ 0.45
TRIM28-209ENST00000597423 DCAF15Q66K64 600 aa17.86■□□□□ 0.45
TRIM28-209ENST00000597423 CPLX2Q6PUV4 134 aaKnown RBP17.86■□□□□ 0.45
TRIM28-209ENST00000597423 TMEM39BQ9GZU3 492 aa17.86■□□□□ 0.45
TRIM28-209ENST00000597423 NAV1Q8NEY1 1877 aa17.86■□□□□ 0.45
TRIM28-209ENST00000597423 BAZ2AQ9UIF9 1905 aaKnown RBP17.86■□□□□ 0.45
TRIM28-209ENST00000597423 CCDC196A0A1B0GTZ2 297 aa17.85■□□□□ 0.45
TRIM28-209ENST00000597423 ZBTB43O43298 467 aa17.85■□□□□ 0.45
TRIM28-209ENST00000597423 HIRAP54198 1017 aaPredicted RBP17.85■□□□□ 0.45
TRIM28-209ENST00000597423 SEC23AQ15436 765 aa17.85■□□□□ 0.45
TRIM28-209ENST00000597423 SULF1Q8IWU6 871 aa17.85■□□□□ 0.45
TRIM28-209ENST00000597423 ENAHQ8N8S7 591 aaPredicted RBP17.85■□□□□ 0.45
TRIM28-209ENST00000597423 LLPHQ9BRT6 129 aaKnown RBP17.85■□□□□ 0.45
TRIM28-209ENST00000597423 KAT14Q9H8E8 782 aa17.85■□□□□ 0.45
TRIM28-209ENST00000597423 GOLGA8BA8MQT2 603 aa17.84■□□□□ 0.45
TRIM28-209ENST00000597423 MPHOSPH10O00566 681 aaKnown RBP17.84■□□□□ 0.45
TRIM28-209ENST00000597423 MAP3K10Q02779 954 aa17.84■□□□□ 0.45
TRIM28-209ENST00000597423 ABCB5Q2M3G0 1257 aa17.84■□□□□ 0.45
TRIM28-209ENST00000597423 SPRYD3Q8NCJ5 442 aa17.84■□□□□ 0.45
TRIM28-209ENST00000597423 GPHNQ9NQX3 736 aaPredicted RBP17.84■□□□□ 0.45
TRIM28-209ENST00000597423 GGA3Q9NZ52 723 aa17.84■□□□□ 0.45
TRIM28-209ENST00000597423 ADAMTSL1Q8N6G6 1762 aa17.84■□□□□ 0.45
TRIM28-209ENST00000597423 GOLGB1Q14789 3259 aaKnown RBP17.83■□□□□ 0.44
TRIM28-209ENST00000597423 MYH1P12882 1939 aa17.83■□□□□ 0.44
TRIM28-209ENST00000597423 PDIA4P13667 645 aaKnown RBP17.83■□□□□ 0.44
TRIM28-209ENST00000597423 METAP2P50579 478 aaKnown RBP eCLIP17.83■□□□□ 0.441e-7■■■□□ 14.6
TRIM28-209ENST00000597423 STK3Q13188 491 aa17.83■□□□□ 0.44
TRIM28-209ENST00000597423 TMEM179Q6ZVK1 233 aa17.83■□□□□ 0.44
TRIM28-209ENST00000597423 CCDC83Q8IWF9 413 aa17.83■□□□□ 0.44
TRIM28-209ENST00000597423 GTF3C6Q969F1 213 aa17.83■□□□□ 0.44
TRIM28-209ENST00000597423 TAF1DQ9H5J8 278 aaPredicted RBP17.83■□□□□ 0.44
TRIM28-209ENST00000597423 KANSL2Q9H9L4 492 aa17.83■□□□□ 0.44
TRIM28-209ENST00000597423 GINM1Q9NU53 330 aa17.83■□□□□ 0.44
TRIM28-209ENST00000597423 BRPF3Q9ULD4 1205 aa17.83■□□□□ 0.44
TRIM28-209ENST00000597423 SMC3Q9UQE7 1217 aa17.83■□□□□ 0.44
TRIM28-209ENST00000597423 FOCADQ5VW36 1801 aa17.83■□□□□ 0.44
TRIM28-209ENST00000597423 CPLX1O14810 134 aa17.82■□□□□ 0.44
TRIM28-209ENST00000597423 CDKL5O76039 1030 aa17.82■□□□□ 0.44
TRIM28-209ENST00000597423 DDAH1O94760 285 aa17.82■□□□□ 0.44
TRIM28-209ENST00000597423 TOP1P11387 765 aaKnown RBP17.82■□□□□ 0.44
TRIM28-209ENST00000597423 AKR1B1P15121 316 aa17.82■□□□□ 0.44
TRIM28-209ENST00000597423 VEGFAP15692 232 aaPredicted RBP17.82■□□□□ 0.44
TRIM28-209ENST00000597423 APOA5Q6Q788 366 aa17.82■□□□□ 0.44
TRIM28-209ENST00000597423 ZNF654Q8IZM8 581 aa17.82■□□□□ 0.44
TRIM28-209ENST00000597423 NECAB1Q8N987 351 aa17.82■□□□□ 0.44
TRIM28-209ENST00000597423 NKX2-3Q8TAU0 364 aa17.82■□□□□ 0.44
TRIM28-209ENST00000597423 IL17RBQ9NRM6 502 aa17.82■□□□□ 0.44
TRIM28-209ENST00000597423 PGAP2Q9UHJ9 254 aa17.82■□□□□ 0.44
TRIM28-209ENST00000597423 STX8Q9UNK0 236 aa17.82■□□□□ 0.44
TRIM28-209ENST00000597423 KIF3AQ9Y496 699 aa17.82■□□□□ 0.44
TRIM28-209ENST00000597423 ECM29Q5VYK3 1845 aa17.82■□□□□ 0.44
TRIM28-209ENST00000597423 LAMB1P07942 1786 aa17.81■□□□□ 0.44
TRIM28-209ENST00000597423 ASTN2O75129 1339 aaPredicted RBP17.81■□□□□ 0.44
TRIM28-209ENST00000597423 TTLL1O95922 423 aa17.81■□□□□ 0.44
TRIM28-209ENST00000597423 KIF5BP33176 963 aa17.81■□□□□ 0.44
TRIM28-209ENST00000597423 TEPSINQ96N21 525 aa17.81■□□□□ 0.44
TRIM28-209ENST00000597423 MAP3K14Q99558 947 aa17.81■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms