RNA–Protein interactions for RNA: ENST00000594399.1

USE1-204, Transcript of unconventional SNARE in the ER 1, humanhuman

TSL 2

Gene USE1, Length 613 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USE1-204ENST00000594399 KIF2CQ99661 725 aa12.81□□□□□ -0.36
USE1-204ENST00000594399 ZNF341Q9BYN7 854 aa12.81□□□□□ -0.36
USE1-204ENST00000594399 INCENPQ9NQS7 918 aa12.81□□□□□ -0.36
USE1-204ENST00000594399 PAPPA2Q9BXP8 1791 aa12.81□□□□□ -0.36
USE1-204ENST00000594399 PLIN4Q96Q06 1357 aa12.81□□□□□ -0.36
USE1-204ENST00000594399 TSPY2A6NKD2 308 aa12.8□□□□□ -0.36
USE1-204ENST00000594399 RANBP6O60518 1105 aaKnown RBP12.8□□□□□ -0.36
USE1-204ENST00000594399 TSPY3P0CV98 308 aa12.8□□□□□ -0.36
USE1-204ENST00000594399 TSPY8P0CW00 308 aa12.8□□□□□ -0.36
USE1-204ENST00000594399 RABEP1Q15276 862 aa12.8□□□□□ -0.36
USE1-204ENST00000594399 TATDN1Q6P1N9 297 aa12.8□□□□□ -0.36
USE1-204ENST00000594399 DLK2Q6UY11 383 aa12.8□□□□□ -0.36
USE1-204ENST00000594399 MIGA2Q7L4E1 593 aa12.8□□□□□ -0.36
USE1-204ENST00000594399 ZNF444Q8N0Y2 327 aaPredicted RBP12.8□□□□□ -0.36
USE1-204ENST00000594399 CCDC17Q96LX7 622 aa12.8□□□□□ -0.36
USE1-204ENST00000594399 CYP46A1Q9Y6A2 500 aa12.8□□□□□ -0.36
USE1-204ENST00000594399 WDR19Q8NEZ3 1342 aa12.8□□□□□ -0.36
USE1-204ENST00000594399 DOCK1Q14185 1865 aa12.8□□□□□ -0.36
USE1-204ENST00000594399 GREB1LQ9C091 1923 aaPredicted RBP12.8□□□□□ -0.36
USE1-204ENST00000594399 OTOFQ9HC10 1997 aa12.8□□□□□ -0.36
USE1-204ENST00000594399 ATAD5Q96QE3 1844 aa12.79□□□□□ -0.36
USE1-204ENST00000594399 TRAF5O00463 557 aa12.79□□□□□ -0.36
USE1-204ENST00000594399 PRC1O43663 620 aa12.79□□□□□ -0.36
USE1-204ENST00000594399 PPP1R12BO60237 982 aaPredicted RBP12.79□□□□□ -0.36
USE1-204ENST00000594399 RPS6KB1P23443 525 aa12.79□□□□□ -0.36
USE1-204ENST00000594399 MCM5P33992 734 aa12.79□□□□□ -0.36
USE1-204ENST00000594399 CERKLQ49MI3 558 aaPredicted RBP12.79□□□□□ -0.36
USE1-204ENST00000594399 RUFY3Q7L099 469 aa12.79□□□□□ -0.36
USE1-204ENST00000594399 UPF3BQ9BZI7 483 aaKnown RBP12.79□□□□□ -0.36
USE1-204ENST00000594399 ZSWIM6Q9HCJ5 1215 aa12.79□□□□□ -0.36
USE1-204ENST00000594399 MPHOSPH10O00566 681 aaKnown RBP12.78□□□□□ -0.36
USE1-204ENST00000594399 GDF11O95390 407 aa12.78□□□□□ -0.36
USE1-204ENST00000594399 AKR1B1P15121 316 aa12.78□□□□□ -0.36
USE1-204ENST00000594399 ANTXR2P58335 489 aa12.78□□□□□ -0.36
USE1-204ENST00000594399 TFAP4Q01664 338 aa12.78□□□□□ -0.36
USE1-204ENST00000594399 COL9A3Q14050 684 aaPredicted RBP12.78□□□□□ -0.36
USE1-204ENST00000594399 ABCB5Q2M3G0 1257 aa12.78□□□□□ -0.36
USE1-204ENST00000594399 FAM47AQ5JRC9 791 aa12.78□□□□□ -0.36
USE1-204ENST00000594399 CYB5R4Q7L1T6 521 aa12.78□□□□□ -0.36
USE1-204ENST00000594399 DHX32Q7L7V1 743 aaKnown RBP12.78□□□□□ -0.36
USE1-204ENST00000594399 IQCA1Q86XH1 822 aa12.78□□□□□ -0.36
USE1-204ENST00000594399 NEDD1Q8NHV4 660 aa12.78□□□□□ -0.36
USE1-204ENST00000594399 NKX2-3Q8TAU0 364 aa12.78□□□□□ -0.36
USE1-204ENST00000594399 WRNIP1Q96S55 665 aa12.78□□□□□ -0.36
USE1-204ENST00000594399 ZSWIM5Q9P217 1185 aa12.78□□□□□ -0.36
USE1-204ENST00000594399 PHF20L1A8MW92 1017 aa12.77□□□□□ -0.37
USE1-204ENST00000594399 CPA1P15085 419 aa12.77□□□□□ -0.37
USE1-204ENST00000594399 CAP2P40123 477 aa12.77□□□□□ -0.37
USE1-204ENST00000594399 IREB2P48200 963 aaKnown RBP12.77□□□□□ -0.37
USE1-204ENST00000594399 EXOSC10Q01780 885 aaKnown RBP12.77□□□□□ -0.37
USE1-204ENST00000594399 RRP1BQ14684 758 aaKnown RBP12.77□□□□□ -0.37
USE1-204ENST00000594399 SART3Q15020 963 aaKnown RBP12.77□□□□□ -0.37
USE1-204ENST00000594399 TMEM179Q6ZVK1 233 aa12.77□□□□□ -0.37
USE1-204ENST00000594399 CHST3Q7LGC8 479 aa12.77□□□□□ -0.37
USE1-204ENST00000594399 IL27Q8NEV9 243 aa12.77□□□□□ -0.37
USE1-204ENST00000594399 TCEANC2Q96MN5 208 aa12.77□□□□□ -0.37
USE1-204ENST00000594399 UBAC1Q9BSL1 405 aa12.77□□□□□ -0.37
USE1-204ENST00000594399 ZNF408Q9H9D4 720 aa12.77□□□□□ -0.37
USE1-204ENST00000594399 CABP5Q9NP86 173 aa12.77□□□□□ -0.37
USE1-204ENST00000594399 ZNF112Q9UJU3 913 aa12.77□□□□□ -0.37
USE1-204ENST00000594399 ZBTB21Q9ULJ3 1066 aa12.77□□□□□ -0.37
USE1-204ENST00000594399 ABT1Q9ULW3 272 aaKnown RBP12.77□□□□□ -0.37
USE1-204ENST00000594399 TRPM7Q96QT4 1865 aa12.76□□□□□ -0.37
USE1-204ENST00000594399 ERICH2A1L162 156 aa12.76□□□□□ -0.37
USE1-204ENST00000594399 GH2P01242 217 aa12.76□□□□□ -0.37
USE1-204ENST00000594399 NEK4P51957 841 aa12.76□□□□□ -0.37
USE1-204ENST00000594399 PRKG1Q13976 671 aa12.76□□□□□ -0.37
USE1-204ENST00000594399 TTLL12Q14166 644 aaPredicted RBP12.76□□□□□ -0.37
USE1-204ENST00000594399 MAP3K11Q16584 847 aa12.76□□□□□ -0.37
USE1-204ENST00000594399 CCDC178Q5BJE1 867 aa12.76□□□□□ -0.37
USE1-204ENST00000594399 PPP4R3BQ5MIZ7 849 aa12.76□□□□□ -0.37
USE1-204ENST00000594399 ARMC9Q7Z3E5 817 aa12.76□□□□□ -0.37
USE1-204ENST00000594399 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.76□□□□□ -0.37
USE1-204ENST00000594399 TMEM87BQ96K49 555 aa12.76□□□□□ -0.37
USE1-204ENST00000594399 ZSCAN10Q96SZ4 725 aaPredicted RBP12.76□□□□□ -0.37
USE1-204ENST00000594399 ZKSCAN3Q9BRR0 538 aa12.76□□□□□ -0.37
USE1-204ENST00000594399 MTA3Q9BTC8 594 aa12.76□□□□□ -0.37
USE1-204ENST00000594399 GINM1Q9NU53 330 aa12.76□□□□□ -0.37
USE1-204ENST00000594399 PDRG1Q9NUG6 133 aa12.76□□□□□ -0.37
USE1-204ENST00000594399 TCP11L1Q9NUJ3 509 aa12.76□□□□□ -0.37
USE1-204ENST00000594399 ANGEL1Q9UNK9 670 aaKnown RBP12.76□□□□□ -0.37
USE1-204ENST00000594399 FZD1Q9UP38 647 aa12.76□□□□□ -0.37
USE1-204ENST00000594399 TNKSO95271 1327 aa12.76□□□□□ -0.37
USE1-204ENST00000594399 IGKV6D-41A0A0C4DH26 115 aa12.75□□□□□ -0.37
USE1-204ENST00000594399 SH2B2O14492 632 aaPredicted RBP12.75□□□□□ -0.37
USE1-204ENST00000594399 IFIT3O14879 490 aaKnown RBP12.75□□□□□ -0.37
USE1-204ENST00000594399 ST18O60284 1047 aa12.75□□□□□ -0.37
USE1-204ENST00000594399 CTNND1O60716 968 aaKnown RBP12.75□□□□□ -0.37
USE1-204ENST00000594399 USP2O75604 605 aaPredicted RBP12.75□□□□□ -0.37
USE1-204ENST00000594399 CELF2O95319 508 aaKnown RBP12.75□□□□□ -0.37
USE1-204ENST00000594399 PCNTO95613 3336 aa12.75□□□□□ -0.37
USE1-204ENST00000594399 ASNSP08243 561 aa12.75□□□□□ -0.37
USE1-204ENST00000594399 INPP5BP32019 993 aa12.75□□□□□ -0.37
USE1-204ENST00000594399 FKBP1BP68106 108 aa12.75□□□□□ -0.37
USE1-204ENST00000594399 FGD1P98174 961 aa12.75□□□□□ -0.37
USE1-204ENST00000594399 FMR1Q06787 632 aaKnown RBP eCLIP12.75□□□□□ -0.37
USE1-204ENST00000594399 SHROOM1Q2M3G4 852 aaPredicted RBP12.75□□□□□ -0.37
USE1-204ENST00000594399 DEFB115Q30KQ5 88 aa12.75□□□□□ -0.37
USE1-204ENST00000594399 TMEM67Q5HYA8 995 aa12.75□□□□□ -0.37
USE1-204ENST00000594399 NOL9Q5SY16 702 aaKnown RBP12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms