RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 IGF2BP3O00425 579 aaKnown RBP eCLIP17.99■□□□□ 0.47
UPF1-202ENST00000594243 SDSP20132 328 aa17.99■□□□□ 0.47
UPF1-202ENST00000594243 MCMDC2Q4G0Z9 681 aa17.99■□□□□ 0.47
UPF1-202ENST00000594243 SBK1Q52WX2 424 aa17.99■□□□□ 0.47
UPF1-202ENST00000594243 ZCCHC17Q9NP64 241 aaKnown RBP17.99■□□□□ 0.47
UPF1-202ENST00000594243 CABP5Q9NP86 173 aa17.99■□□□□ 0.47
UPF1-202ENST00000594243 LAMB1P07942 1786 aa17.99■□□□□ 0.47
UPF1-202ENST00000594243 SIPA1L1O43166 1804 aa17.98■□□□□ 0.47
UPF1-202ENST00000594243 GDF11O95390 407 aa17.98■□□□□ 0.47
UPF1-202ENST00000594243 TBC1D8O95759 1140 aa17.98■□□□□ 0.47
UPF1-202ENST00000594243 CYP2D6P10635 497 aa17.98■□□□□ 0.47
UPF1-202ENST00000594243 TDO2P48775 406 aa17.98■□□□□ 0.47
UPF1-202ENST00000594243 TTC22Q5TAA0 569 aa17.98■□□□□ 0.47
UPF1-202ENST00000594243 FASTKD5Q7L8L6 764 aaKnown RBP17.98■□□□□ 0.47
UPF1-202ENST00000594243 IFNL3Q8IZI9 196 aa17.98■□□□□ 0.47
UPF1-202ENST00000594243 ZNF280CQ8ND82 737 aa17.98■□□□□ 0.47
UPF1-202ENST00000594243 NAV1Q8NEY1 1877 aa17.98■□□□□ 0.47
UPF1-202ENST00000594243 DOCK1Q14185 1865 aa17.97■□□□□ 0.47
UPF1-202ENST00000594243 A0A0G2JLL6 359 aaPredicted RBP17.97■□□□□ 0.47
UPF1-202ENST00000594243 SHMT1P34896 483 aa17.97■□□□□ 0.47
UPF1-202ENST00000594243 ABCB5Q2M3G0 1257 aa17.97■□□□□ 0.47
UPF1-202ENST00000594243 ERICH6BQ5W0A0 696 aa17.97■□□□□ 0.47
UPF1-202ENST00000594243 PRRT2Q7Z6L0 340 aaPredicted RBP17.97■□□□□ 0.47
UPF1-202ENST00000594243 ZBTB21Q9ULJ3 1066 aa17.97■□□□□ 0.47
UPF1-202ENST00000594243 DDX60LQ5H9U9 1706 aaKnown RBP17.97■□□□□ 0.47
UPF1-202ENST00000594243 CYP2D7A0A087X1C5 515 aa17.96■□□□□ 0.47
UPF1-202ENST00000594243 TRIM75PA6NK02 468 aa17.96■□□□□ 0.47
UPF1-202ENST00000594243 MINDY4BA8MYZ0 360 aa17.96■□□□□ 0.47
UPF1-202ENST00000594243 BTBD19C9JJ37 291 aa17.96■□□□□ 0.47
UPF1-202ENST00000594243 GH2P01242 217 aa17.96■□□□□ 0.47
UPF1-202ENST00000594243 MFAP1P55081 439 aaKnown RBP17.96■□□□□ 0.47
UPF1-202ENST00000594243 SPP2Q13103 211 aa17.96■□□□□ 0.47
UPF1-202ENST00000594243 NMIQ13287 307 aaPredicted RBP17.96■□□□□ 0.47
UPF1-202ENST00000594243 NOM1Q5C9Z4 860 aaKnown RBP17.96■□□□□ 0.47
UPF1-202ENST00000594243 ANKRD23Q86SG2 305 aa17.96■□□□□ 0.47
UPF1-202ENST00000594243 FAM43AQ8N2R8 423 aa17.96■□□□□ 0.47
UPF1-202ENST00000594243 DYNLL2Q96FJ2 89 aa17.96■□□□□ 0.47
UPF1-202ENST00000594243 FAM227BQ96M60 508 aa17.96■□□□□ 0.47
UPF1-202ENST00000594243 WDR18Q9BV38 432 aa17.96■□□□□ 0.47
UPF1-202ENST00000594243 DIAPH3Q9NSV4 1193 aa17.96■□□□□ 0.47
UPF1-202ENST00000594243 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.96■□□□□ 0.47
UPF1-202ENST00000594243 CDK8P49336 464 aa17.95■□□□□ 0.46
UPF1-202ENST00000594243 JAG1P78504 1218 aa17.95■□□□□ 0.46
UPF1-202ENST00000594243 EVX2Q03828 476 aa17.95■□□□□ 0.46
UPF1-202ENST00000594243 CCDC129Q6ZRS4 1044 aa17.95■□□□□ 0.46
UPF1-202ENST00000594243 C16orf86Q6ZW13 317 aa17.95■□□□□ 0.46
UPF1-202ENST00000594243 CCDC84Q86UT8 332 aaPredicted RBP17.95■□□□□ 0.46
UPF1-202ENST00000594243 CCDC17Q96LX7 622 aa17.95■□□□□ 0.46
UPF1-202ENST00000594243 NAPBQ9H115 298 aa17.95■□□□□ 0.46
UPF1-202ENST00000594243 ZFYVE28Q9HCC9 887 aa17.95■□□□□ 0.46
UPF1-202ENST00000594243 EPB41L4AQ9HCS5 686 aaPredicted RBP17.95■□□□□ 0.46
UPF1-202ENST00000594243 A0A0D9SFI3 127 aa17.94■□□□□ 0.46
UPF1-202ENST00000594243 C19orf81C9J6K1 198 aa17.94■□□□□ 0.46
UPF1-202ENST00000594243 MPHOSPH10O00566 681 aaKnown RBP17.94■□□□□ 0.46
UPF1-202ENST00000594243 GSPT1P15170 499 aaKnown RBP17.94■□□□□ 0.46
UPF1-202ENST00000594243 RAB3GAP1Q15042 981 aa17.94■□□□□ 0.46
UPF1-202ENST00000594243 TAF1CQ15572 869 aaPredicted RBP17.94■□□□□ 0.46
UPF1-202ENST00000594243 GADL1Q6ZQY3 521 aa17.94■□□□□ 0.46
UPF1-202ENST00000594243 ZNF287Q9HBT7 754 aa17.94■□□□□ 0.46
UPF1-202ENST00000594243 USP17L10C9JJH3 530 aa17.93■□□□□ 0.46
UPF1-202ENST00000594243 GPR25O00155 361 aa17.93■□□□□ 0.46
UPF1-202ENST00000594243 PDHXO00330 501 aa17.93■□□□□ 0.46
UPF1-202ENST00000594243 SLC3A2P08195 630 aaKnown RBP17.93■□□□□ 0.46
UPF1-202ENST00000594243 CRHR2Q13324 411 aa17.93■□□□□ 0.46
UPF1-202ENST00000594243 MOGSQ13724 837 aa17.93■□□□□ 0.46
UPF1-202ENST00000594243 SH3D19Q5HYK7 790 aa17.93■□□□□ 0.46
UPF1-202ENST00000594243 CWC27Q6UX04 472 aaKnown RBP17.93■□□□□ 0.46
UPF1-202ENST00000594243 PROCA1Q8NCQ7 364 aaPredicted RBP17.93■□□□□ 0.46
UPF1-202ENST00000594243 SLC44A5Q8NCS7 719 aa17.93■□□□□ 0.46
UPF1-202ENST00000594243 MKNK2Q9HBH9 465 aa17.93■□□□□ 0.46
UPF1-202ENST00000594243 BACE1P56817 501 aa17.92■□□□□ 0.46
UPF1-202ENST00000594243 SHROOM1Q2M3G4 852 aaPredicted RBP17.92■□□□□ 0.46
UPF1-202ENST00000594243 GPAT2Q6NUI2 795 aa17.92■□□□□ 0.46
UPF1-202ENST00000594243 TMEM179Q6ZVK1 233 aa17.92■□□□□ 0.46
UPF1-202ENST00000594243 TMOD4Q9NZQ9 345 aa17.92■□□□□ 0.46
UPF1-202ENST00000594243 SLC45A1Q9Y2W3 748 aa17.92■□□□□ 0.46
UPF1-202ENST00000594243 CCDC171Q6TFL3 1326 aa17.92■□□□□ 0.46
UPF1-202ENST00000594243 CASP8AP2Q9UKL3 1982 aa17.91■□□□□ 0.46
UPF1-202ENST00000594243 ATAD5Q96QE3 1844 aa17.91■□□□□ 0.46
UPF1-202ENST00000594243 SMIM22K7EJ46 135 aa17.91■□□□□ 0.46
UPF1-202ENST00000594243 FKTNO75072 461 aa17.91■□□□□ 0.46
UPF1-202ENST00000594243 HSPD1P10809 573 aaKnown RBP17.91■□□□□ 0.46
UPF1-202ENST00000594243 PABPC4Q13310 644 aaKnown RBP eCLIP17.91■□□□□ 0.46
UPF1-202ENST00000594243 ALX1Q15699 326 aa17.91■□□□□ 0.46
UPF1-202ENST00000594243 R3HDMLQ9H3Y0 253 aa17.91■□□□□ 0.46
UPF1-202ENST00000594243 AGTPBP1Q9UPW5 1226 aa17.91■□□□□ 0.46
UPF1-202ENST00000594243 BAZ2AQ9UIF9 1905 aaKnown RBP17.91■□□□□ 0.46
UPF1-202ENST00000594243 PHIPQ8WWQ0 1821 aa17.91■□□□□ 0.46
UPF1-202ENST00000594243 ROBO3Q96MS0 1386 aa17.91■□□□□ 0.46
UPF1-202ENST00000594243 TLR2O60603 784 aa17.9■□□□□ 0.46
UPF1-202ENST00000594243 HMGCS2P54868 508 aa17.9■□□□□ 0.46
UPF1-202ENST00000594243 PDE4BQ07343 736 aa17.9■□□□□ 0.46
UPF1-202ENST00000594243 PPARAQ07869 468 aa17.9■□□□□ 0.46
UPF1-202ENST00000594243 MTMR2Q13614 643 aa17.9■□□□□ 0.46
UPF1-202ENST00000594243 SEPT2Q15019 361 aa17.9■□□□□ 0.46
UPF1-202ENST00000594243 VPS53Q5VIR6 699 aa17.9■□□□□ 0.46
UPF1-202ENST00000594243 ZNF589Q86UQ0 364 aaPredicted RBP17.9■□□□□ 0.46
UPF1-202ENST00000594243 ZNF444Q8N0Y2 327 aaPredicted RBP17.9■□□□□ 0.46
UPF1-202ENST00000594243 ZNF296Q8WUU4 475 aaPredicted RBP17.9■□□□□ 0.46
UPF1-202ENST00000594243 RUFY2Q8WXA3 655 aa17.9■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms