RNA–Protein interactions for RNA: ENST00000593223.1

SMAD4-216, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 568 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-216ENST00000593223 METTL22Q9BUU2 404 aaPredicted RBP7.89□□□□□ -1.15
SMAD4-216ENST00000593223 REV1Q9UBZ9 1251 aa7.89□□□□□ -1.15
SMAD4-216ENST00000593223 TJP2Q9UDY2 1190 aa7.89□□□□□ -1.15
SMAD4-216ENST00000593223 KLHL3Q9UH77 587 aa7.89□□□□□ -1.15
SMAD4-216ENST00000593223 INPP5FQ9Y2H2 1132 aa7.89□□□□□ -1.15
SMAD4-216ENST00000593223 RANGAP1P46060 587 aaPredicted RBP7.88□□□□□ -1.15
SMAD4-216ENST00000593223 PRAMEF13Q5VWM6 474 aa7.88□□□□□ -1.15
SMAD4-216ENST00000593223 SLC6A19Q695T7 634 aa7.88□□□□□ -1.15
SMAD4-216ENST00000593223 OGFOD3Q6PK18 319 aa7.88□□□□□ -1.15
SMAD4-216ENST00000593223 ZNF765Q7L2R6 523 aa7.88□□□□□ -1.15
SMAD4-216ENST00000593223 NPM2Q86SE8 214 aaKnown RBP7.88□□□□□ -1.15
SMAD4-216ENST00000593223 ZDHHC13Q8IUH4 622 aa7.88□□□□□ -1.15
SMAD4-216ENST00000593223 FAM13CQ8NE31 585 aa7.88□□□□□ -1.15
SMAD4-216ENST00000593223 GATA6Q92908 595 aa7.88□□□□□ -1.15
SMAD4-216ENST00000593223 ACSF2Q96CM8 615 aaPredicted RBP7.88□□□□□ -1.15
SMAD4-216ENST00000593223 DPH2Q9BQC3 489 aaPredicted RBP7.88□□□□□ -1.15
SMAD4-216ENST00000593223 DUSP23Q9BVJ7 150 aa7.88□□□□□ -1.15
SMAD4-216ENST00000593223 PRDM10Q9NQV6 1147 aa7.88□□□□□ -1.15
SMAD4-216ENST00000593223 LEMD3Q9Y2U8 911 aa7.88□□□□□ -1.15
SMAD4-216ENST00000593223 LEFTY1O75610 366 aa7.87□□□□□ -1.15
SMAD4-216ENST00000593223 ITGB7P26010 798 aa7.87□□□□□ -1.15
SMAD4-216ENST00000593223 YARSP54577 528 aaKnown RBP7.87□□□□□ -1.15
SMAD4-216ENST00000593223 ARHGAP27Q6ZUM4 889 aa7.87□□□□□ -1.15
SMAD4-216ENST00000593223 MCATQ8IVS2 390 aaKnown RBP7.87□□□□□ -1.15
SMAD4-216ENST00000593223 SLITRK4Q8IW52 837 aa7.87□□□□□ -1.15
SMAD4-216ENST00000593223 MRPL41Q8IXM3 137 aaKnown RBP7.87□□□□□ -1.15
SMAD4-216ENST00000593223 MFSD2AQ8NA29 543 aa7.87□□□□□ -1.15
SMAD4-216ENST00000593223 GPRASP2Q96D09 838 aa7.87□□□□□ -1.15
SMAD4-216ENST00000593223 MIPEPQ99797 713 aa7.87□□□□□ -1.15
SMAD4-216ENST00000593223 LRRC4CQ9HCJ2 640 aa7.87□□□□□ -1.15
SMAD4-216ENST00000593223 PRR36Q9H6K5 1346 aa7.86□□□□□ -1.15
SMAD4-216ENST00000593223 CST3P01034 146 aaPredicted RBP7.86□□□□□ -1.15
SMAD4-216ENST00000593223 CAP2P40123 477 aa7.86□□□□□ -1.15
SMAD4-216ENST00000593223 CLCQ05315 142 aa7.86□□□□□ -1.15
SMAD4-216ENST00000593223 TMEM201Q5SNT2 666 aa7.86□□□□□ -1.15
SMAD4-216ENST00000593223 FBXW10Q5XX13 1052 aa7.86□□□□□ -1.15
SMAD4-216ENST00000593223 REXO1Q8N1G1 1221 aaKnown RBP7.86□□□□□ -1.15
SMAD4-216ENST00000593223 SPATA32Q96LK8 384 aa7.86□□□□□ -1.15
SMAD4-216ENST00000593223 CAPN10Q9HC96 672 aa7.86□□□□□ -1.15
SMAD4-216ENST00000593223 PIM2Q9P1W9 311 aa7.86□□□□□ -1.15
SMAD4-216ENST00000593223 UPK3BL1B0FP48 263 aa7.85□□□□□ -1.15
SMAD4-216ENST00000593223 UPK3BL2E5RIL1 263 aa7.85□□□□□ -1.15
SMAD4-216ENST00000593223 CYP26A1O43174 497 aa7.85□□□□□ -1.15
SMAD4-216ENST00000593223 TGFB1P01137 390 aa7.85□□□□□ -1.15
SMAD4-216ENST00000593223 GRIK1P39086 918 aa7.85□□□□□ -1.15
SMAD4-216ENST00000593223 TNNI2P48788 182 aa7.85□□□□□ -1.15
SMAD4-216ENST00000593223 GNL2Q13823 731 aaKnown RBP7.85□□□□□ -1.15
SMAD4-216ENST00000593223 CPSF6Q16630 551 aaKnown RBP eCLIP7.85□□□□□ -1.15
SMAD4-216ENST00000593223 FERD3LQ96RJ6 166 aa7.85□□□□□ -1.15
SMAD4-216ENST00000593223 TPX2Q9ULW0 747 aaKnown RBP7.85□□□□□ -1.15
SMAD4-216ENST00000593223 EFR3BQ9Y2G0 817 aa7.85□□□□□ -1.15
SMAD4-216ENST00000593223 CHURC1-FNTBB4DL54 471 aa7.84□□□□□ -1.15
SMAD4-216ENST00000593223 LETMD1Q6P1Q0 360 aa7.84□□□□□ -1.15
SMAD4-216ENST00000593223 EHMT1Q9H9B1 1298 aa7.84□□□□□ -1.15
SMAD4-216ENST00000593223 IGSF5Q9NSI5 407 aa7.84□□□□□ -1.15
SMAD4-216ENST00000593223 PRR19A6NJB7 356 aa7.83□□□□□ -1.16
SMAD4-216ENST00000593223 SLITRK5O94991 958 aa7.83□□□□□ -1.16
SMAD4-216ENST00000593223 ATE1O95260 518 aa7.83□□□□□ -1.16
SMAD4-216ENST00000593223 CHMP4BP1P59074 171 aa7.83□□□□□ -1.16
SMAD4-216ENST00000593223 ZMYM1Q5SVZ6 1142 aa7.83□□□□□ -1.16
SMAD4-216ENST00000593223 VPS37DQ86XT2 251 aa7.83□□□□□ -1.16
SMAD4-216ENST00000593223 PHACTR4Q8IZ21 702 aa7.83□□□□□ -1.16
SMAD4-216ENST00000593223 GINM1Q9NU53 330 aa7.83□□□□□ -1.16
SMAD4-216ENST00000593223 GTF2IRD1Q9UHL9 959 aa7.83□□□□□ -1.16
SMAD4-216ENST00000593223 RNF112Q9ULX5 631 aa7.83□□□□□ -1.16
SMAD4-216ENST00000593223 RAG1P15918 1043 aa7.82□□□□□ -1.16
SMAD4-216ENST00000593223 GJA8P48165 433 aa7.82□□□□□ -1.16
SMAD4-216ENST00000593223 COL9A2Q14055 689 aaPredicted RBP7.82□□□□□ -1.16
SMAD4-216ENST00000593223 LRRFIP1Q32MZ4 808 aaKnown RBP7.82□□□□□ -1.16
SMAD4-216ENST00000593223 ZNF746Q6NUN9 644 aaPredicted RBP7.82□□□□□ -1.16
SMAD4-216ENST00000593223 PRDM5Q9NQX1 630 aaPredicted RBP7.82□□□□□ -1.16
SMAD4-216ENST00000593223 GMIPQ9P107 970 aa7.82□□□□□ -1.16
SMAD4-216ENST00000593223 PPT2Q9UMR5 302 aa7.82□□□□□ -1.16
SMAD4-216ENST00000593223 SLC22A31A6NKX4 558 aa7.81□□□□□ -1.16
SMAD4-216ENST00000593223 COBLO75128 1261 aa7.81□□□□□ -1.16
SMAD4-216ENST00000593223 IMPDH2P12268 514 aa7.81□□□□□ -1.16
SMAD4-216ENST00000593223 FOSL1P15407 271 aa7.81□□□□□ -1.16
SMAD4-216ENST00000593223 SSTR4P31391 388 aa7.81□□□□□ -1.16
SMAD4-216ENST00000593223 ARSHQ5FYA8 562 aa7.81□□□□□ -1.16
SMAD4-216ENST00000593223 CDH24Q86UP0 819 aa7.81□□□□□ -1.16
SMAD4-216ENST00000593223 KRTAP1-3Q8IUG1 177 aa7.81□□□□□ -1.16
SMAD4-216ENST00000593223 SLFN12Q8IYM2 578 aa7.81□□□□□ -1.16
SMAD4-216ENST00000593223 RIN3Q8TB24 985 aa7.81□□□□□ -1.16
SMAD4-216ENST00000593223 RASGRP4Q8TDF6 673 aa7.81□□□□□ -1.16
SMAD4-216ENST00000593223 CYB5D2Q8WUJ1 264 aa7.81□□□□□ -1.16
SMAD4-216ENST00000593223 CPLX3Q8WVH0 158 aa7.81□□□□□ -1.16
SMAD4-216ENST00000593223 CCDC74BQ96LY2 380 aa7.81□□□□□ -1.16
SMAD4-216ENST00000593223 CRBNQ96SW2 442 aa7.81□□□□□ -1.16
SMAD4-216ENST00000593223 GNAT3A8MTJ3 354 aa7.8□□□□□ -1.16
SMAD4-216ENST00000593223 DNAJA2O60884 412 aa7.8□□□□□ -1.16
SMAD4-216ENST00000593223 CYP7A1P22680 504 aa7.8□□□□□ -1.16
SMAD4-216ENST00000593223 HOXA10P31260 410 aaPredicted RBP7.8□□□□□ -1.16
SMAD4-216ENST00000593223 GBP1P32455 592 aa7.8□□□□□ -1.16
SMAD4-216ENST00000593223 ETV3P41162 512 aa7.8□□□□□ -1.16
SMAD4-216ENST00000593223 NASPP49321 788 aaPredicted RBP7.8□□□□□ -1.16
SMAD4-216ENST00000593223 OVOS1Q6IE37 1185 aa7.8□□□□□ -1.16
SMAD4-216ENST00000593223 INTS5Q6P9B9 1019 aaKnown RBP7.8□□□□□ -1.16
SMAD4-216ENST00000593223 CCDC81Q6ZN84 652 aa7.8□□□□□ -1.16
SMAD4-216ENST00000593223 FAM181AQ8N9Y4 354 aa7.8□□□□□ -1.16
SMAD4-216ENST00000593223 ANTXR1Q9H6X2 564 aa7.8□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms