RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 CTAGE5O15320 804 aa11.21□□□□□ -0.61
LIG3-216ENST00000593099 GDF11O95390 407 aa11.21□□□□□ -0.61
LIG3-216ENST00000593099 CFBP00751 764 aa11.21□□□□□ -0.61
LIG3-216ENST00000593099 LIG1P18858 919 aa11.21□□□□□ -0.61
LIG3-216ENST00000593099 CACNB3P54284 484 aa11.21□□□□□ -0.61
LIG3-216ENST00000593099 KIF4BQ2VIQ3 1234 aa11.21□□□□□ -0.61
LIG3-216ENST00000593099 PI4K2BQ8TCG2 481 aa11.21□□□□□ -0.61
LIG3-216ENST00000593099 MED23Q9ULK4 1368 aa11.21□□□□□ -0.61
LIG3-216ENST00000593099 PXDNLA1KZ92 1463 aa11.21□□□□□ -0.61
LIG3-216ENST00000593099 LMNB1P20700 586 aa11.21□□□□□ -0.62
LIG3-216ENST00000593099 NT5C2P49902 561 aa11.21□□□□□ -0.62
LIG3-216ENST00000593099 MAPK8IP2Q13387 824 aaPredicted RBP11.21□□□□□ -0.62
LIG3-216ENST00000593099 KRT26Q7Z3Y9 468 aa11.21□□□□□ -0.62
LIG3-216ENST00000593099 CNOT7Q9UIV1 285 aaKnown RBP11.21□□□□□ -0.62
LIG3-216ENST00000593099 CD2APQ9Y5K6 639 aa11.21□□□□□ -0.62
LIG3-216ENST00000593099 MROH7-TTC4A0A0A0MT08 1334 aa11.21□□□□□ -0.62
LIG3-216ENST00000593099 TTLL1O95922 423 aa11.21□□□□□ -0.62
LIG3-216ENST00000593099 ASNSP08243 561 aa11.21□□□□□ -0.62
LIG3-216ENST00000593099 SRGNP10124 158 aa11.21□□□□□ -0.62
LIG3-216ENST00000593099 ARID4AP29374 1257 aaPredicted RBP11.21□□□□□ -0.62
LIG3-216ENST00000593099 CCNA1P78396 465 aa11.21□□□□□ -0.62
LIG3-216ENST00000593099 DDX19AQ9NUU7 478 aaKnown RBP11.21□□□□□ -0.62
LIG3-216ENST00000593099 LETM2Q2VYF4 491 aa11.2□□□□□ -0.62
LIG3-216ENST00000593099 STRBPQ96SI9 672 aaKnown RBP11.2□□□□□ -0.62
LIG3-216ENST00000593099 UTYO14607 1347 aa11.2□□□□□ -0.62
LIG3-216ENST00000593099 ABCC12Q96J65 1359 aa11.2□□□□□ -0.62
LIG3-216ENST00000593099 SLIT3O75094 1523 aa11.2□□□□□ -0.62
LIG3-216ENST00000593099 NRXN3Q9Y4C0 1643 aa11.2□□□□□ -0.62
LIG3-216ENST00000593099 SMTNL1A8MU46 457 aa11.2□□□□□ -0.62
LIG3-216ENST00000593099 TMEM232C9JQI7 657 aa11.2□□□□□ -0.62
LIG3-216ENST00000593099 KLRF2D3W0D1 207 aa11.2□□□□□ -0.62
LIG3-216ENST00000593099 OSBPP22059 807 aa11.2□□□□□ -0.62
LIG3-216ENST00000593099 SP4Q02446 784 aa11.2□□□□□ -0.62
LIG3-216ENST00000593099 GPATCH4Q5T3I0 446 aaKnown RBP11.2□□□□□ -0.62
LIG3-216ENST00000593099 GIMAP6Q6P9H5 292 aa11.2□□□□□ -0.62
LIG3-216ENST00000593099 PTF1AQ7RTS3 328 aa11.2□□□□□ -0.62
LIG3-216ENST00000593099 MICALL2Q8IY33 904 aa11.2□□□□□ -0.62
LIG3-216ENST00000593099 SH3RF3Q8TEJ3 882 aaPredicted RBP11.2□□□□□ -0.62
LIG3-216ENST00000593099 MRPL11Q9Y3B7 192 aaKnown RBP11.2□□□□□ -0.62
LIG3-216ENST00000593099 POLRMTO00411 1230 aaKnown RBP11.2□□□□□ -0.62
LIG3-216ENST00000593099 MYCLP12524 364 aaPredicted RBP11.2□□□□□ -0.62
LIG3-216ENST00000593099 ALAS1P13196 640 aa11.2□□□□□ -0.62
LIG3-216ENST00000593099 JAKMIP3Q5VZ66 844 aa11.2□□□□□ -0.62
LIG3-216ENST00000593099 KRT25Q7Z3Z0 450 aa11.2□□□□□ -0.62
LIG3-216ENST00000593099 ZNF589Q86UQ0 364 aaPredicted RBP11.2□□□□□ -0.62
LIG3-216ENST00000593099 TNPO1Q92973 898 aaKnown RBP11.2□□□□□ -0.62
LIG3-216ENST00000593099 ZNF341Q9BYN7 854 aa11.2□□□□□ -0.62
LIG3-216ENST00000593099 GDPD2Q9HCC8 539 aa11.2□□□□□ -0.62
LIG3-216ENST00000593099 CHD2O14647 1828 aaKnown RBP11.2□□□□□ -0.62
LIG3-216ENST00000593099 DDAH1O94760 285 aa11.2□□□□□ -0.62
LIG3-216ENST00000593099 FGFR1OPO95684 399 aaKnown RBP11.2□□□□□ -0.62
LIG3-216ENST00000593099 MCM7P33993 719 aa11.2□□□□□ -0.62
LIG3-216ENST00000593099 ZNF827Q17R98 1081 aa11.2□□□□□ -0.62
LIG3-216ENST00000593099 FANCBQ8NB91 859 aa11.2□□□□□ -0.62
LIG3-216ENST00000593099 SMARCE1Q969G3 411 aa11.2□□□□□ -0.62
LIG3-216ENST00000593099 SLC4A9Q96Q91 983 aa11.2□□□□□ -0.62
LIG3-216ENST00000593099 HACL1Q9UJ83 578 aa11.2□□□□□ -0.62
LIG3-216ENST00000593099 F13A1P00488 732 aa11.19□□□□□ -0.62
LIG3-216ENST00000593099 CAMK4Q16566 473 aa11.19□□□□□ -0.62
LIG3-216ENST00000593099 NOM1Q5C9Z4 860 aaKnown RBP11.19□□□□□ -0.62
LIG3-216ENST00000593099 KLHL10Q6JEL2 608 aa11.19□□□□□ -0.62
LIG3-216ENST00000593099 LSG1Q9H089 658 aaKnown RBP11.19□□□□□ -0.62
LIG3-216ENST00000593099 GPHNQ9NQX3 736 aaPredicted RBP11.19□□□□□ -0.62
LIG3-216ENST00000593099 TRIM21P19474 475 aaKnown RBP11.19□□□□□ -0.62
LIG3-216ENST00000593099 SSR1P43307 286 aaKnown RBP11.19□□□□□ -0.62
LIG3-216ENST00000593099 RILPL1Q5EBL4 403 aa11.19□□□□□ -0.62
LIG3-216ENST00000593099 DTHD1Q6ZMT9 781 aa11.19□□□□□ -0.62
LIG3-216ENST00000593099 ZNF274Q96GC6 653 aaPredicted RBP11.19□□□□□ -0.62
LIG3-216ENST00000593099 LRRC4BQ9NT99 713 aa11.19□□□□□ -0.62
LIG3-216ENST00000593099 ANO10Q9NW15 660 aa11.19□□□□□ -0.62
LIG3-216ENST00000593099 ZNHIT6Q9NWK9 470 aaKnown RBP11.19□□□□□ -0.62
LIG3-216ENST00000593099 NWD1Q149M9 1564 aa11.19□□□□□ -0.62
LIG3-216ENST00000593099 FRMPD2Q68DX3 1309 aaPredicted RBP11.19□□□□□ -0.62
LIG3-216ENST00000593099 STAT6P42226 847 aa11.19□□□□□ -0.62
LIG3-216ENST00000593099 NONOQ15233 471 aaKnown RBP eCLIP11.19□□□□□ -0.62
LIG3-216ENST00000593099 RSBN1LQ6PCB5 846 aaPredicted RBP11.19□□□□□ -0.62
LIG3-216ENST00000593099 PHKBQ93100 1093 aa11.19□□□□□ -0.62
LIG3-216ENST00000593099 DNAI2Q9GZS0 605 aa11.19□□□□□ -0.62
LIG3-216ENST00000593099 SPTLC2O15270 562 aa11.18□□□□□ -0.62
LIG3-216ENST00000593099 RPS12P25398 132 aaKnown RBP11.18□□□□□ -0.62
LIG3-216ENST00000593099 NAP1L1P55209 391 aaKnown RBP11.18□□□□□ -0.62
LIG3-216ENST00000593099 ODF2Q5BJF6 829 aa11.18□□□□□ -0.62
LIG3-216ENST00000593099 MTERF4Q7Z6M4 381 aaKnown RBP11.18□□□□□ -0.62
LIG3-216ENST00000593099 FBXO11Q86XK2 927 aa11.18□□□□□ -0.62
LIG3-216ENST00000593099 DIS3L2Q8IYB7 885 aaKnown RBP11.18□□□□□ -0.62
LIG3-216ENST00000593099 DYNLL2Q96FJ2 89 aa11.18□□□□□ -0.62
LIG3-216ENST00000593099 MARCKSP29966 332 aaPredicted RBP11.18□□□□□ -0.62
LIG3-216ENST00000593099 SYKP43405 635 aa11.18□□□□□ -0.62
LIG3-216ENST00000593099 CDK8P49336 464 aa11.18□□□□□ -0.62
LIG3-216ENST00000593099 MCTP2Q6DN12 878 aa11.18□□□□□ -0.62
LIG3-216ENST00000593099 SYCP3Q8IZU3 236 aa11.18□□□□□ -0.62
LIG3-216ENST00000593099 PKD2L1Q9P0L9 805 aa11.18□□□□□ -0.62
LIG3-216ENST00000593099 ROBO1Q9Y6N7 1651 aa11.18□□□□□ -0.62
LIG3-216ENST00000593099 CYP21A2P08686 494 aa11.18□□□□□ -0.62
LIG3-216ENST00000593099 ASPRV1Q53RT3 343 aa11.18□□□□□ -0.62
LIG3-216ENST00000593099 TMEM179Q6ZVK1 233 aa11.18□□□□□ -0.62
LIG3-216ENST00000593099 SPICE1Q8N0Z3 855 aa11.18□□□□□ -0.62
LIG3-216ENST00000593099 ANKRD35Q8N283 1001 aa11.18□□□□□ -0.62
LIG3-216ENST00000593099 CBFA2T2O43439 604 aa11.18□□□□□ -0.62
LIG3-216ENST00000593099 MCF2L2Q86YR7 1114 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms