RNA–Protein interactions for RNA: ENST00000590588.5

ZNF540-209, Transcript of zinc finger protein 540, humanhuman

TSL 3

Gene ZNF540, Length 563 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-209ENST00000590588 PRDM5Q9NQX1 630 aaPredicted RBP13.7□□□□□ -0.22
ZNF540-209ENST00000590588 FAM196BA6NMK8 535 aa13.69□□□□□ -0.22
ZNF540-209ENST00000590588 C19orf81C9J6K1 198 aa13.69□□□□□ -0.22
ZNF540-209ENST00000590588 GLRX3O76003 335 aaKnown RBP13.69□□□□□ -0.22
ZNF540-209ENST00000590588 MAP2K5Q13163 448 aa13.69□□□□□ -0.22
ZNF540-209ENST00000590588 GRIN2CQ14957 1233 aa13.69□□□□□ -0.22
ZNF540-209ENST00000590588 USP38Q8NB14 1042 aa13.69□□□□□ -0.22
ZNF540-209ENST00000590588 ARRDC4Q8NCT1 418 aa13.69□□□□□ -0.22
ZNF540-209ENST00000590588 LOC285556D6RIA3 1793 aa13.68□□□□□ -0.22
ZNF540-209ENST00000590588 ZBTB22O15209 634 aa13.68□□□□□ -0.22
ZNF540-209ENST00000590588 MTMR2Q13614 643 aa13.68□□□□□ -0.22
ZNF540-209ENST00000590588 SPTY2D1Q68D10 685 aaPredicted RBP13.68□□□□□ -0.22
ZNF540-209ENST00000590588 PRKRIP1Q9H875 184 aaPredicted RBP13.68□□□□□ -0.22
ZNF540-209ENST00000590588 ABCF2Q9UG63 623 aa13.68□□□□□ -0.22
ZNF540-209ENST00000590588 GPR75-ASB3A0A0A6YYF3 556 aa13.67□□□□□ -0.22
ZNF540-209ENST00000590588 USP17L10C9JJH3 530 aa13.67□□□□□ -0.22
ZNF540-209ENST00000590588 MAP4K4O95819 1239 aaPredicted RBP13.67□□□□□ -0.22
ZNF540-209ENST00000590588 RHBDL3P58872 404 aa13.67□□□□□ -0.22
ZNF540-209ENST00000590588 CCNA1P78396 465 aa13.67□□□□□ -0.22
ZNF540-209ENST00000590588 ATP2B2Q01814 1243 aa13.67□□□□□ -0.22
ZNF540-209ENST00000590588 RRP1BQ14684 758 aaKnown RBP13.67□□□□□ -0.22
ZNF540-209ENST00000590588 ATP2B3Q16720 1220 aa13.67□□□□□ -0.22
ZNF540-209ENST00000590588 GJC2Q5T442 439 aaPredicted RBP13.67□□□□□ -0.22
ZNF540-209ENST00000590588 RNPC3Q96LT9 517 aaKnown RBP13.67□□□□□ -0.22
ZNF540-209ENST00000590588 ASB2Q96Q27 587 aa13.67□□□□□ -0.22
ZNF540-209ENST00000590588 PAGR1Q9BTK6 254 aa13.67□□□□□ -0.22
ZNF540-209ENST00000590588 CEP126Q9P2H0 1117 aa13.67□□□□□ -0.22
ZNF540-209ENST00000590588 HERC5Q9UII4 1024 aaKnown RBP13.67□□□□□ -0.22
ZNF540-209ENST00000590588 MAST2Q6P0Q8 1798 aa13.67□□□□□ -0.22
ZNF540-209ENST00000590588 MROH7-TTC4A0A0A0MT08 1334 aa13.66□□□□□ -0.22
ZNF540-209ENST00000590588 MYH13Q9UKX3 1938 aa13.66□□□□□ -0.22
ZNF540-209ENST00000590588 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.66□□□□□ -0.22
ZNF540-209ENST00000590588 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.66□□□□□ -0.22
ZNF540-209ENST00000590588 KBTBD13C9JR72 458 aa13.66□□□□□ -0.22
ZNF540-209ENST00000590588 ASNSP08243 561 aa13.66□□□□□ -0.22
ZNF540-209ENST00000590588 PHKA1P46020 1223 aa13.66□□□□□ -0.22
ZNF540-209ENST00000590588 ATG9AQ7Z3C6 839 aa13.66□□□□□ -0.22
ZNF540-209ENST00000590588 PDLIM7Q9NR12 457 aa13.66□□□□□ -0.22
ZNF540-209ENST00000590588 FLRT1Q9NZU1 646 aa13.66□□□□□ -0.22
ZNF540-209ENST00000590588 FBXO3Q9UK99 471 aa13.66□□□□□ -0.22
ZNF540-209ENST00000590588 TACC3Q9Y6A5 838 aa13.66□□□□□ -0.22
ZNF540-209ENST00000590588 LTBP2Q14767 1821 aa13.65□□□□□ -0.22
ZNF540-209ENST00000590588 MYH2Q9UKX2 1941 aa13.65□□□□□ -0.22
ZNF540-209ENST00000590588 TRIM43BA6NCK2 446 aa13.65□□□□□ -0.22
ZNF540-209ENST00000590588 SLC15A5A6NIM6 579 aa13.65□□□□□ -0.22
ZNF540-209ENST00000590588 PTPREP23469 700 aa13.65□□□□□ -0.22
ZNF540-209ENST00000590588 RFX5P48382 616 aaPredicted RBP13.65□□□□□ -0.22
ZNF540-209ENST00000590588 MRPS5P82675 430 aaKnown RBP13.65□□□□□ -0.22
ZNF540-209ENST00000590588 SNX17Q15036 470 aa13.65□□□□□ -0.22
ZNF540-209ENST00000590588 TRIM60Q495X7 471 aa13.65□□□□□ -0.22
ZNF540-209ENST00000590588 C1orf53Q5VUE5 145 aa13.65□□□□□ -0.22
ZNF540-209ENST00000590588 SH3RF1Q7Z6J0 888 aa13.65□□□□□ -0.22
ZNF540-209ENST00000590588 WDR63Q8IWG1 891 aa13.65□□□□□ -0.22
ZNF540-209ENST00000590588 ADAMTS19Q8TE59 1207 aa13.65□□□□□ -0.22
ZNF540-209ENST00000590588 TRIM43Q96BQ3 446 aaPredicted RBP13.65□□□□□ -0.22
ZNF540-209ENST00000590588 UHRF1Q96T88 793 aaPredicted RBP13.65□□□□□ -0.22
ZNF540-209ENST00000590588 GAS2L1Q99501 681 aaPredicted RBP13.65□□□□□ -0.22
ZNF540-209ENST00000590588 C1QTNF1Q9BXJ1 281 aa13.65□□□□□ -0.22
ZNF540-209ENST00000590588 ZNF576Q9H609 170 aa13.65□□□□□ -0.22
ZNF540-209ENST00000590588 PI4KBQ9UBF8 816 aa13.65□□□□□ -0.22
ZNF540-209ENST00000590588 RABGAP1Q9Y3P9 1069 aa13.65□□□□□ -0.22
ZNF540-209ENST00000590588 ARIH1Q9Y4X5 557 aaPredicted RBP13.65□□□□□ -0.22
ZNF540-209ENST00000590588 HOXC6P09630 235 aa13.64□□□□□ -0.23
ZNF540-209ENST00000590588 DNAJB2P25686 324 aa13.64□□□□□ -0.23
ZNF540-209ENST00000590588 CYP2C19P33261 490 aa13.64□□□□□ -0.23
ZNF540-209ENST00000590588 WDR78Q5VTH9 848 aa13.64□□□□□ -0.23
ZNF540-209ENST00000590588 CCDC102BQ68D86 513 aa13.64□□□□□ -0.23
ZNF540-209ENST00000590588 ERICH6Q7L0X2 663 aa13.64□□□□□ -0.23
ZNF540-209ENST00000590588 IL27Q8NEV9 243 aa13.64□□□□□ -0.23
ZNF540-209ENST00000590588 PPM1EQ8WY54 764 aa13.64□□□□□ -0.23
ZNF540-209ENST00000590588 THEGQ9P2T0 379 aa13.64□□□□□ -0.23
ZNF540-209ENST00000590588 CIAO1O76071 339 aa13.63□□□□□ -0.23
ZNF540-209ENST00000590588 LDHCP07864 332 aa13.63□□□□□ -0.23
ZNF540-209ENST00000590588 MECOMQ03112 1051 aa13.63□□□□□ -0.23
ZNF540-209ENST00000590588 AKNAD1Q5T1N1 836 aa13.63□□□□□ -0.23
ZNF540-209ENST00000590588 POTEEQ6S8J3 1075 aa13.63□□□□□ -0.23
ZNF540-209ENST00000590588 POTEDQ86YR6 584 aa13.63□□□□□ -0.23
ZNF540-209ENST00000590588 TRPV1Q8NER1 839 aa13.63□□□□□ -0.23
ZNF540-209ENST00000590588 GINM1Q9NU53 330 aa13.63□□□□□ -0.23
ZNF540-209ENST00000590588 NDUFB9Q9Y6M9 179 aa13.63□□□□□ -0.23
ZNF540-209ENST00000590588 IVNS1ABPQ9Y6Y0 642 aa13.63□□□□□ -0.23
ZNF540-209ENST00000590588 PDS5AQ29RF7 1337 aaKnown RBP13.63□□□□□ -0.23
ZNF540-209ENST00000590588 CYBAP13498 195 aa13.62□□□□□ -0.23
ZNF540-209ENST00000590588 ADCYAP1R1P41586 468 aa13.62□□□□□ -0.23
ZNF540-209ENST00000590588 GSTO1P78417 241 aa13.62□□□□□ -0.23
ZNF540-209ENST00000590588 USP17L2Q6R6M4 530 aa13.62□□□□□ -0.23
ZNF540-209ENST00000590588 NPLOC4Q8TAT6 608 aa13.62□□□□□ -0.23
ZNF540-209ENST00000590588 TIFAQ96CG3 184 aa13.62□□□□□ -0.23
ZNF540-209ENST00000590588 USP44Q9H0E7 712 aa13.62□□□□□ -0.23
ZNF540-209ENST00000590588 SIL1Q9H173 461 aa13.62□□□□□ -0.23
ZNF540-209ENST00000590588 DHX36Q9H2U1 1008 aaKnown RBP13.62□□□□□ -0.23
ZNF540-209ENST00000590588 CNMDO75829 334 aa13.61□□□□□ -0.23
ZNF540-209ENST00000590588 MYCNP04198 464 aaPredicted RBP13.61□□□□□ -0.23
ZNF540-209ENST00000590588 RAG1P15918 1043 aa13.61□□□□□ -0.23
ZNF540-209ENST00000590588 ITGB8P26012 769 aa13.61□□□□□ -0.23
ZNF540-209ENST00000590588 EPHB4P54760 987 aa13.61□□□□□ -0.23
ZNF540-209ENST00000590588 TLE2Q04725 743 aa13.61□□□□□ -0.23
ZNF540-209ENST00000590588 RASGRF1Q13972 1273 aa13.61□□□□□ -0.23
ZNF540-209ENST00000590588 GRB14Q14449 540 aa13.61□□□□□ -0.23
ZNF540-209ENST00000590588 FOXP4Q8IVH2 680 aaPredicted RBP13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms