RNA–Protein interactions for RNA: ENST00000589604.5

VPS4B-204, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 1,672 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-204ENST00000589604 PLCD1P51178 756 aa12.36□□□□□ -0.43
VPS4B-204ENST00000589604 MIGA2Q7L4E1 593 aa12.36□□□□□ -0.43
VPS4B-204ENST00000589604 LARP6Q9BRS8 491 aaKnown RBP12.36□□□□□ -0.43
VPS4B-204ENST00000589604 AGXT2Q9BYV1 514 aa12.36□□□□□ -0.43
VPS4B-204ENST00000589604 DNAJC18Q9H819 358 aa12.36□□□□□ -0.43
VPS4B-204ENST00000589604 INCENPQ9NQS7 918 aa12.36□□□□□ -0.43
VPS4B-204ENST00000589604 ANAPC4Q9UJX5 808 aa12.36□□□□□ -0.43
VPS4B-204ENST00000589604 USP2O75604 605 aaPredicted RBP12.35□□□□□ -0.43
VPS4B-204ENST00000589604 LARGE1O95461 756 aa12.35□□□□□ -0.43
VPS4B-204ENST00000589604 ANTXR2P58335 489 aa12.35□□□□□ -0.43
VPS4B-204ENST00000589604 CTDSPL2Q05D32 466 aa12.35□□□□□ -0.43
VPS4B-204ENST00000589604 RRP1BQ14684 758 aaKnown RBP12.35□□□□□ -0.43
VPS4B-204ENST00000589604 CTR9Q6PD62 1173 aa12.35□□□□□ -0.43
VPS4B-204ENST00000589604 DHX32Q7L7V1 743 aaKnown RBP12.35□□□□□ -0.43
VPS4B-204ENST00000589604 CERS3Q8IU89 383 aa12.35□□□□□ -0.43
VPS4B-204ENST00000589604 CSRNP1Q96S65 589 aa12.35□□□□□ -0.43
VPS4B-204ENST00000589604 NACAP1Q9BZK3 213 aa12.35□□□□□ -0.43
VPS4B-204ENST00000589604 ATP8A2Q9NTI2 1148 aa12.35□□□□□ -0.43
VPS4B-204ENST00000589604 PCNTO95613 3336 aa12.35□□□□□ -0.43
VPS4B-204ENST00000589604 UBE2Q2LH0YL09 131 aa12.35□□□□□ -0.43
VPS4B-204ENST00000589604 HMGB1P09429 215 aaKnown RBP12.35□□□□□ -0.43
VPS4B-204ENST00000589604 TDO2P48775 406 aa12.35□□□□□ -0.43
VPS4B-204ENST00000589604 ST3GAL1Q11201 340 aa12.35□□□□□ -0.43
VPS4B-204ENST00000589604 SHROOM1Q2M3G4 852 aaPredicted RBP12.35□□□□□ -0.43
VPS4B-204ENST00000589604 NOL8Q76FK4 1167 aaKnown RBP12.35□□□□□ -0.43
VPS4B-204ENST00000589604 ZSCAN29Q8IWY8 852 aaPredicted RBP12.35□□□□□ -0.43
VPS4B-204ENST00000589604 FBXL16Q8N461 479 aa12.35□□□□□ -0.43
VPS4B-204ENST00000589604 MCM9Q9NXL9 1143 aa12.35□□□□□ -0.43
VPS4B-204ENST00000589604 TPCN1Q9ULQ1 816 aa12.35□□□□□ -0.43
VPS4B-204ENST00000589604 LIMCH1Q9UPQ0 1083 aa12.35□□□□□ -0.43
VPS4B-204ENST00000589604 NEDD4P46934 1319 aa12.34□□□□□ -0.43
VPS4B-204ENST00000589604 USP17L12C9JPN9 530 aa12.34□□□□□ -0.43
VPS4B-204ENST00000589604 USP17L21D6R901 530 aa12.34□□□□□ -0.43
VPS4B-204ENST00000589604 FGRP09769 529 aa12.34□□□□□ -0.43
VPS4B-204ENST00000589604 APLP1P51693 650 aa12.34□□□□□ -0.43
VPS4B-204ENST00000589604 MAP3K10Q02779 954 aa12.34□□□□□ -0.43
VPS4B-204ENST00000589604 PPARAQ07869 468 aa12.34□□□□□ -0.43
VPS4B-204ENST00000589604 SBK1Q52WX2 424 aa12.34□□□□□ -0.43
VPS4B-204ENST00000589604 CYB5R4Q7L1T6 521 aa12.34□□□□□ -0.43
VPS4B-204ENST00000589604 STAG1Q8WVM7 1258 aa12.34□□□□□ -0.43
VPS4B-204ENST00000589604 LRRC2Q9BYS8 371 aa12.34□□□□□ -0.43
VPS4B-204ENST00000589604 SLKQ9H2G2 1235 aaPredicted RBP12.34□□□□□ -0.43
VPS4B-204ENST00000589604 GBA2Q9HCG7 927 aaPredicted RBP12.34□□□□□ -0.43
VPS4B-204ENST00000589604 TMEM88BA6NKF7 163 aa12.33□□□□□ -0.44
VPS4B-204ENST00000589604 PHF20L1A8MW92 1017 aa12.33□□□□□ -0.44
VPS4B-204ENST00000589604 JAG1P78504 1218 aa12.33□□□□□ -0.44
VPS4B-204ENST00000589604 ME3Q16798 604 aa12.33□□□□□ -0.44
VPS4B-204ENST00000589604 SUPT20HL1Q3ZLR7 823 aa12.33□□□□□ -0.44
VPS4B-204ENST00000589604 AKNAD1Q5T1N1 836 aa12.33□□□□□ -0.44
VPS4B-204ENST00000589604 C12orf60Q5U649 245 aa12.33□□□□□ -0.44
VPS4B-204ENST00000589604 Q6ZUG5 572 aa12.33□□□□□ -0.44
VPS4B-204ENST00000589604 CHST3Q7LGC8 479 aa12.33□□□□□ -0.44
VPS4B-204ENST00000589604 METTL16Q86W50 562 aaKnown RBP12.33□□□□□ -0.44
VPS4B-204ENST00000589604 SLC44A5Q8NCS7 719 aa12.33□□□□□ -0.44
VPS4B-204ENST00000589604 NCOA7Q8NI08 942 aa12.33□□□□□ -0.44
VPS4B-204ENST00000589604 DYNLL2Q96FJ2 89 aa12.33□□□□□ -0.44
VPS4B-204ENST00000589604 CLMNQ96JQ2 1002 aa12.33□□□□□ -0.44
VPS4B-204ENST00000589604 GPHNQ9NQX3 736 aaPredicted RBP12.33□□□□□ -0.44
VPS4B-204ENST00000589604 GABPAQ06546 454 aa12.32□□□□□ -0.44
VPS4B-204ENST00000589604 SAPCD2Q86UD0 394 aa12.32□□□□□ -0.44
VPS4B-204ENST00000589604 DHX36Q9H2U1 1008 aaKnown RBP12.32□□□□□ -0.44
VPS4B-204ENST00000589604 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.32□□□□□ -0.44
VPS4B-204ENST00000589604 ANGEL1Q9UNK9 670 aaKnown RBP12.32□□□□□ -0.44
VPS4B-204ENST00000589604 WDR19Q8NEZ3 1342 aa12.32□□□□□ -0.44
VPS4B-204ENST00000589604 MINDY4BA8MYZ0 360 aa12.32□□□□□ -0.44
VPS4B-204ENST00000589604 B4E1Z4 1266 aa12.32□□□□□ -0.44
VPS4B-204ENST00000589604 HSPA6P17066 643 aa12.32□□□□□ -0.44
VPS4B-204ENST00000589604 INPP5BP32019 993 aa12.32□□□□□ -0.44
VPS4B-204ENST00000589604 EVCP57679 992 aa12.32□□□□□ -0.44
VPS4B-204ENST00000589604 ANKRD1Q15327 319 aa12.32□□□□□ -0.44
VPS4B-204ENST00000589604 MAP3K11Q16584 847 aa12.32□□□□□ -0.44
VPS4B-204ENST00000589604 LDLRAD1Q5T700 205 aa12.32□□□□□ -0.44
VPS4B-204ENST00000589604 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.32□□□□□ -0.44
VPS4B-204ENST00000589604 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.32□□□□□ -0.44
VPS4B-204ENST00000589604 ZKSCAN4Q969J2 545 aaPredicted RBP12.32□□□□□ -0.44
VPS4B-204ENST00000589604 KLRG1Q96E93 195 aa12.32□□□□□ -0.44
VPS4B-204ENST00000589604 INTS4Q96HW7 963 aaKnown RBP12.32□□□□□ -0.44
VPS4B-204ENST00000589604 ZSCAN31Q96LW9 406 aaPredicted RBP12.32□□□□□ -0.44
VPS4B-204ENST00000589604 PI4KBQ9UBF8 816 aa12.32□□□□□ -0.44
VPS4B-204ENST00000589604 ZNF112Q9UJU3 913 aa12.32□□□□□ -0.44
VPS4B-204ENST00000589604 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.32□□□□□ -0.44
VPS4B-204ENST00000589604 TLL2Q9Y6L7 1015 aa12.32□□□□□ -0.44
VPS4B-204ENST00000589604 PRC1O43663 620 aa12.31□□□□□ -0.44
VPS4B-204ENST00000589604 TBC1D12O60347 775 aa12.31□□□□□ -0.44
VPS4B-204ENST00000589604 POLR3DP05423 398 aaPredicted RBP12.31□□□□□ -0.44
VPS4B-204ENST00000589604 MCM5P33992 734 aa12.31□□□□□ -0.44
VPS4B-204ENST00000589604 SHMT1P34896 483 aa12.31□□□□□ -0.44
VPS4B-204ENST00000589604 TTLL12Q14166 644 aaPredicted RBP12.31□□□□□ -0.44
VPS4B-204ENST00000589604 STK11IPQ8N1F8 1099 aa12.31□□□□□ -0.44
VPS4B-204ENST00000589604 C2orf69Q8N8R5 385 aa12.31□□□□□ -0.44
VPS4B-204ENST00000589604 IGDCC4Q8TDY8 1250 aa12.31□□□□□ -0.44
VPS4B-204ENST00000589604 BRF1Q92994 677 aa12.31□□□□□ -0.44
VPS4B-204ENST00000589604 CREBZFQ9NS37 354 aa12.31□□□□□ -0.44
VPS4B-204ENST00000589604 ZSWIM5Q9P217 1185 aa12.31□□□□□ -0.44
VPS4B-204ENST00000589604 ROBO3Q96MS0 1386 aa12.3□□□□□ -0.44
VPS4B-204ENST00000589604 NF2P35240 595 aa12.3□□□□□ -0.44
VPS4B-204ENST00000589604 HUNKP57058 714 aa12.3□□□□□ -0.44
VPS4B-204ENST00000589604 VGLL4Q14135 290 aa12.3□□□□□ -0.44
VPS4B-204ENST00000589604 MFSD6Q6ZSS7 791 aa12.3□□□□□ -0.44
VPS4B-204ENST00000589604 NECAB1Q8N987 351 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms