RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 XBP1P17861 261 aa16.45■□□□□ 0.22
LIG3-205ENST00000585941 RHBDL3P58872 404 aa16.45■□□□□ 0.22
LIG3-205ENST00000585941 TROAPQ12815 778 aa16.45■□□□□ 0.22
LIG3-205ENST00000585941 GNL2Q13823 731 aaKnown RBP16.45■□□□□ 0.22
LIG3-205ENST00000585941 OTUD7BQ6GQQ9 843 aa16.45■□□□□ 0.22
LIG3-205ENST00000585941 NBPF11Q86T75 865 aa16.45■□□□□ 0.22
LIG3-205ENST00000585941 PGBD1Q96JS3 809 aa16.45■□□□□ 0.22
LIG3-205ENST00000585941 MAP3K14Q99558 947 aa16.45■□□□□ 0.22
LIG3-205ENST00000585941 SLX4Q8IY92 1834 aa16.45■□□□□ 0.22
LIG3-205ENST00000585941 U2AF2P26368 475 aaKnown RBP eCLIP16.44■□□□□ 0.229e-6■□□□□ 9.5
LIG3-205ENST00000585941 ZNF444Q8N0Y2 327 aaPredicted RBP16.44■□□□□ 0.22
LIG3-205ENST00000585941 SUPT20HQ8NEM7 779 aa16.44■□□□□ 0.22
LIG3-205ENST00000585941 CTCFLQ8NI51 663 aaPredicted RBP16.44■□□□□ 0.22
LIG3-205ENST00000585941 NUP62CLQ9H1M0 184 aa16.44■□□□□ 0.22
LIG3-205ENST00000585941 DAGLAQ9Y4D2 1042 aa16.44■□□□□ 0.22
LIG3-205ENST00000585941 FLT1P17948 1338 aa16.44■□□□□ 0.22
LIG3-205ENST00000585941 KIF5BP33176 963 aa16.43■□□□□ 0.22
LIG3-205ENST00000585941 TFAP4Q01664 338 aa16.43■□□□□ 0.22
LIG3-205ENST00000585941 HHIPL2Q6UWX4 724 aa16.43■□□□□ 0.22
LIG3-205ENST00000585941 MAPKAPK5Q8IW41 473 aa16.43■□□□□ 0.22
LIG3-205ENST00000585941 SLC16A10Q8TF71 515 aa16.43■□□□□ 0.22
LIG3-205ENST00000585941 MRIQ9BWK5 157 aa16.43■□□□□ 0.22
LIG3-205ENST00000585941 PANK2Q9BZ23 570 aa16.43■□□□□ 0.22
LIG3-205ENST00000585941 RBSNQ9H1K0 784 aa16.43■□□□□ 0.22
LIG3-205ENST00000585941 PRPF3O43395 683 aaKnown RBP16.43■□□□□ 0.22
LIG3-205ENST00000585941 LIG1P18858 919 aa16.43■□□□□ 0.22
LIG3-205ENST00000585941 CEBPZQ03701 1054 aaKnown RBP16.43■□□□□ 0.22
LIG3-205ENST00000585941 STK38Q15208 465 aa16.43■□□□□ 0.22
LIG3-205ENST00000585941 FAM47AQ5JRC9 791 aa16.43■□□□□ 0.22
LIG3-205ENST00000585941 C16orf86Q6ZW13 317 aa16.43■□□□□ 0.22
LIG3-205ENST00000585941 LINC00301Q8NCQ3 95 aa16.43■□□□□ 0.22
LIG3-205ENST00000585941 FBXW7Q969H0 707 aa16.43■□□□□ 0.22
LIG3-205ENST00000585941 AIFM3Q96NN9 605 aa16.43■□□□□ 0.22
LIG3-205ENST00000585941 DACT1Q9NYF0 836 aa16.43■□□□□ 0.22
LIG3-205ENST00000585941 TTF2Q9UNY4 1162 aaKnown RBP16.43■□□□□ 0.22
LIG3-205ENST00000585941 A0A1W2PQ27 194 aa16.42■□□□□ 0.22
LIG3-205ENST00000585941 A0A1W2PQ64 194 aa16.42■□□□□ 0.22
LIG3-205ENST00000585941 A0A1W2PQD8 194 aa16.42■□□□□ 0.22
LIG3-205ENST00000585941 MMP1P03956 469 aa16.42■□□□□ 0.22
LIG3-205ENST00000585941 TSPY3P0CV98 308 aa16.42■□□□□ 0.22
LIG3-205ENST00000585941 TSPY8P0CW00 308 aa16.42■□□□□ 0.22
LIG3-205ENST00000585941 ME1P48163 572 aa16.42■□□□□ 0.22
LIG3-205ENST00000585941 SF3A1Q15459 793 aaKnown RBP16.42■□□□□ 0.22
LIG3-205ENST00000585941 MAP3K11Q16584 847 aa16.42■□□□□ 0.22
LIG3-205ENST00000585941 DOK7Q18PE1 504 aa16.42■□□□□ 0.22
LIG3-205ENST00000585941 STRIP1Q5VSL9 837 aa16.42■□□□□ 0.22
LIG3-205ENST00000585941 OLFM4Q6UX06 510 aa16.42■□□□□ 0.22
LIG3-205ENST00000585941 CCDC73Q6ZRK6 1079 aa16.42■□□□□ 0.22
LIG3-205ENST00000585941 FOXP1Q9H334 677 aaPredicted RBP16.42■□□□□ 0.22
LIG3-205ENST00000585941 KAT14Q9H8E8 782 aa16.42■□□□□ 0.22
LIG3-205ENST00000585941 KIF28PB7ZC32 967 aa16.41■□□□□ 0.22
LIG3-205ENST00000585941 HDLBPQ00341 1268 aaKnown RBP16.41■□□□□ 0.22
LIG3-205ENST00000585941 CCDC173Q0VFZ6 552 aa16.41■□□□□ 0.22
LIG3-205ENST00000585941 TPRNQ4KMQ1 711 aa16.41■□□□□ 0.22
LIG3-205ENST00000585941 ANO1Q5XXA6 986 aa16.41■□□□□ 0.22
LIG3-205ENST00000585941 ADALQ6DHV7 355 aa16.41■□□□□ 0.22
LIG3-205ENST00000585941 TMTC3Q6ZXV5 915 aa16.41■□□□□ 0.22
LIG3-205ENST00000585941 CERS5Q8N5B7 392 aa16.41■□□□□ 0.22
LIG3-205ENST00000585941 JMYQ8N9B5 988 aa16.41■□□□□ 0.22
LIG3-205ENST00000585941 TEKT1Q969V4 418 aa16.41■□□□□ 0.22
LIG3-205ENST00000585941 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.41■□□□□ 0.22
LIG3-205ENST00000585941 TNMDQ9H2S6 317 aa16.41■□□□□ 0.22
LIG3-205ENST00000585941 CLSTN2Q9H4D0 955 aa16.41■□□□□ 0.22
LIG3-205ENST00000585941 GJB4Q9NTQ9 266 aa16.41■□□□□ 0.22
LIG3-205ENST00000585941 C10orf71Q711Q0 1435 aa16.41■□□□□ 0.22
LIG3-205ENST00000585941 SPTLC2O15270 562 aa16.4■□□□□ 0.22
LIG3-205ENST00000585941 CTAGE5O15320 804 aa16.4■□□□□ 0.22
LIG3-205ENST00000585941 CCDC192P0DO97 292 aa16.4■□□□□ 0.22
LIG3-205ENST00000585941 GNAQP50148 359 aa16.4■□□□□ 0.22
LIG3-205ENST00000585941 PLCD1P51178 756 aa16.4■□□□□ 0.22
LIG3-205ENST00000585941 EVX2Q03828 476 aa16.4■□□□□ 0.22
LIG3-205ENST00000585941 FUT2Q10981 343 aa16.4■□□□□ 0.22
LIG3-205ENST00000585941 UVSSAQ2YD98 709 aa16.4■□□□□ 0.22
LIG3-205ENST00000585941 RCSD1Q6JBY9 416 aa16.4■□□□□ 0.22
LIG3-205ENST00000585941 C7orf43Q8WVR3 580 aa16.4■□□□□ 0.22
LIG3-205ENST00000585941 DYNLL2Q96FJ2 89 aa16.4■□□□□ 0.22
LIG3-205ENST00000585941 SAP30BPQ9UHR5 308 aaKnown RBP16.4■□□□□ 0.22
LIG3-205ENST00000585941 RASA1P20936 1047 aa16.4■□□□□ 0.22
LIG3-205ENST00000585941 CHRNA5P30532 468 aa16.4■□□□□ 0.22
LIG3-205ENST00000585941 CDK8P49336 464 aa16.4■□□□□ 0.22
LIG3-205ENST00000585941 RBM43Q6ZSC3 357 aaKnown RBP16.4■□□□□ 0.22
LIG3-205ENST00000585941 NOSTRINQ8IVI9 506 aa16.4■□□□□ 0.22
LIG3-205ENST00000585941 CCAR1Q8IX12 1150 aaKnown RBP16.4■□□□□ 0.22
LIG3-205ENST00000585941 FTOQ9C0B1 505 aaKnown RBP eCLIP16.4■□□□□ 0.22
LIG3-205ENST00000585941 TAOK2Q9UL54 1235 aa16.4■□□□□ 0.22
LIG3-205ENST00000585941 NMT2O60551 498 aa16.39■□□□□ 0.21
LIG3-205ENST00000585941 GUCY1A2P33402 732 aa16.39■□□□□ 0.21
LIG3-205ENST00000585941 FAM160A1Q05DH4 1040 aa16.39■□□□□ 0.21
LIG3-205ENST00000585941 SLC39A14Q15043 492 aa16.39■□□□□ 0.21
LIG3-205ENST00000585941 NEDD1Q8NHV4 660 aa16.39■□□□□ 0.21
LIG3-205ENST00000585941 PPP1R9BQ96SB3 815 aa16.39■□□□□ 0.21
LIG3-205ENST00000585941 FUCA2Q9BTY2 467 aa16.39■□□□□ 0.21
LIG3-205ENST00000585941 CLIC4Q9Y696 253 aa16.39■□□□□ 0.21
LIG3-205ENST00000585941 PPP6R2O75170 966 aa16.38■□□□□ 0.21
LIG3-205ENST00000585941 NR1I2O75469 434 aa16.38■□□□□ 0.21
LIG3-205ENST00000585941 KIAA2012Q0VF49 1180 aa16.38■□□□□ 0.21
LIG3-205ENST00000585941 RILPL1Q5EBL4 403 aa16.38■□□□□ 0.21
LIG3-205ENST00000585941 DIS3L2Q8IYB7 885 aaKnown RBP16.38■□□□□ 0.21
LIG3-205ENST00000585941 CCDC82Q8N4S0 544 aa16.38■□□□□ 0.21
LIG3-205ENST00000585941 PNMA1Q8ND90 353 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms