RNA–Protein interactions for RNA: ENST00000585229.1

SMCHD1-212, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 4

Gene SMCHD1, Length 555 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-212ENST00000585229 IMMTQ16891 758 aaKnown RBP11.73□□□□□ -0.53
SMCHD1-212ENST00000585229 OGFOD1Q8N543 542 aa11.73□□□□□ -0.53
SMCHD1-212ENST00000585229 WDR90Q96KV7 1748 aa11.73□□□□□ -0.53
SMCHD1-212ENST00000585229 ARPP21Q9UBL0 812 aaPredicted RBP11.73□□□□□ -0.53
SMCHD1-212ENST00000585229 PCDHAC2Q9Y5I4 1007 aa11.73□□□□□ -0.53
SMCHD1-212ENST00000585229 TAF6LQ9Y6J9 622 aa11.73□□□□□ -0.53
SMCHD1-212ENST00000585229 SRCAPQ6ZRS2 3230 aa11.72□□□□□ -0.53
SMCHD1-212ENST00000585229 APPP05067 770 aa11.72□□□□□ -0.53
SMCHD1-212ENST00000585229 USP5P45974 858 aa11.72□□□□□ -0.53
SMCHD1-212ENST00000585229 TDO2P48775 406 aa11.72□□□□□ -0.53
SMCHD1-212ENST00000585229 FKBP1CQ5VVH2 108 aa11.72□□□□□ -0.53
SMCHD1-212ENST00000585229 CTR9Q6PD62 1173 aa11.72□□□□□ -0.53
SMCHD1-212ENST00000585229 STOX1Q6ZVD7 989 aa11.72□□□□□ -0.53
SMCHD1-212ENST00000585229 GPIHBP1Q8IV16 184 aa11.72□□□□□ -0.53
SMCHD1-212ENST00000585229 STAG1Q8WVM7 1258 aa11.72□□□□□ -0.53
SMCHD1-212ENST00000585229 SLC4A5Q9BY07 1137 aa11.72□□□□□ -0.53
SMCHD1-212ENST00000585229 MYOZ2Q9NPC6 264 aa11.72□□□□□ -0.53
SMCHD1-212ENST00000585229 DDX4Q9NQI0 724 aaKnown RBP11.72□□□□□ -0.53
SMCHD1-212ENST00000585229 USP40Q9NVE5 1235 aa11.72□□□□□ -0.53
SMCHD1-212ENST00000585229 VPS9D1Q9Y2B5 631 aa11.72□□□□□ -0.53
SMCHD1-212ENST00000585229 ATRNL1Q5VV63 1379 aa11.71□□□□□ -0.53
SMCHD1-212ENST00000585229 MYH8P13535 1937 aa11.71□□□□□ -0.53
SMCHD1-212ENST00000585229 ZNF213O14771 459 aa11.71□□□□□ -0.53
SMCHD1-212ENST00000585229 FGRP09769 529 aa11.71□□□□□ -0.53
SMCHD1-212ENST00000585229 PCP11498 1178 aaKnown RBP11.71□□□□□ -0.53
SMCHD1-212ENST00000585229 NT5C2P49902 561 aa11.71□□□□□ -0.53
SMCHD1-212ENST00000585229 PPARAQ07869 468 aa11.71□□□□□ -0.53
SMCHD1-212ENST00000585229 DLGAP5Q15398 846 aa11.71□□□□□ -0.53
SMCHD1-212ENST00000585229 ADCK5Q3MIX3 580 aa11.71□□□□□ -0.53
SMCHD1-212ENST00000585229 ADGRD1Q6QNK2 874 aa11.71□□□□□ -0.53
SMCHD1-212ENST00000585229 TBC1D10CQ8IV04 446 aa11.71□□□□□ -0.53
SMCHD1-212ENST00000585229 TGFBRAP1Q8WUH2 860 aa11.71□□□□□ -0.53
SMCHD1-212ENST00000585229 DDRGK1Q96HY6 314 aa11.71□□□□□ -0.53
SMCHD1-212ENST00000585229 PRMT6Q96LA8 375 aaPredicted RBP11.71□□□□□ -0.53
SMCHD1-212ENST00000585229 GPRC5DQ9NZD1 345 aa11.71□□□□□ -0.53
SMCHD1-212ENST00000585229 CNOT7Q9UIV1 285 aaKnown RBP11.71□□□□□ -0.53
SMCHD1-212ENST00000585229 TSKSQ9UJT2 592 aa11.71□□□□□ -0.53
SMCHD1-212ENST00000585229 GJA3Q9Y6H8 435 aa11.71□□□□□ -0.53
SMCHD1-212ENST00000585229 SHTN1A0MZ66 631 aa11.7□□□□□ -0.54
SMCHD1-212ENST00000585229 USP17L12C9JPN9 530 aa11.7□□□□□ -0.54
SMCHD1-212ENST00000585229 USP17L21D6R901 530 aa11.7□□□□□ -0.54
SMCHD1-212ENST00000585229 E7EWF7 191 aa11.7□□□□□ -0.54
SMCHD1-212ENST00000585229 ENTPD3O75355 529 aa11.7□□□□□ -0.54
SMCHD1-212ENST00000585229 PSMA5P28066 241 aa11.7□□□□□ -0.54
SMCHD1-212ENST00000585229 RBM5P52756 815 aaKnown RBP eCLIP11.7□□□□□ -0.54
SMCHD1-212ENST00000585229 C12orf60Q5U649 245 aa11.7□□□□□ -0.54
SMCHD1-212ENST00000585229 MAPKAPK5Q8IW41 473 aa11.7□□□□□ -0.54
SMCHD1-212ENST00000585229 SNX21Q969T3 373 aa11.7□□□□□ -0.54
SMCHD1-212ENST00000585229 TTC14Q96N46 770 aa11.7□□□□□ -0.54
SMCHD1-212ENST00000585229 OSBPL5Q9H0X9 879 aaPredicted RBP11.7□□□□□ -0.54
SMCHD1-212ENST00000585229 ALDH8A1Q9H2A2 487 aaPredicted RBP11.7□□□□□ -0.54
SMCHD1-212ENST00000585229 TDRD3Q9H7E2 651 aaKnown RBP11.7□□□□□ -0.54
SMCHD1-212ENST00000585229 ZNF70Q9UC06 446 aaPredicted RBP11.7□□□□□ -0.54
SMCHD1-212ENST00000585229 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.7□□□□□ -0.54
SMCHD1-212ENST00000585229 TACC3Q9Y6A5 838 aa11.7□□□□□ -0.54
SMCHD1-212ENST00000585229 WDR19Q8NEZ3 1342 aa11.69□□□□□ -0.54
SMCHD1-212ENST00000585229 GREB1LQ9C091 1923 aaPredicted RBP11.69□□□□□ -0.54
SMCHD1-212ENST00000585229 C3orf80F5H4A9 247 aa11.69□□□□□ -0.54
SMCHD1-212ENST00000585229 TK2O00142 265 aa11.69□□□□□ -0.54
SMCHD1-212ENST00000585229 WNT10BO00744 389 aa11.69□□□□□ -0.54
SMCHD1-212ENST00000585229 ORC4O43929 436 aa11.69□□□□□ -0.54
SMCHD1-212ENST00000585229 HMGB1P09429 215 aaKnown RBP11.69□□□□□ -0.54
SMCHD1-212ENST00000585229 FECHP22830 423 aa11.69□□□□□ -0.54
SMCHD1-212ENST00000585229 PRSS12P56730 875 aa11.69□□□□□ -0.54
SMCHD1-212ENST00000585229 HAND2P61296 217 aa11.69□□□□□ -0.54
SMCHD1-212ENST00000585229 NFIAQ12857 509 aa11.69□□□□□ -0.54
SMCHD1-212ENST00000585229 AKNAD1Q5T1N1 836 aa11.69□□□□□ -0.54
SMCHD1-212ENST00000585229 PADI6Q6TGC4 694 aa11.69□□□□□ -0.54
SMCHD1-212ENST00000585229 MB21D2Q8IYB1 491 aaPredicted RBP11.69□□□□□ -0.54
SMCHD1-212ENST00000585229 JAKMIP1Q96N16 626 aaKnown RBP11.69□□□□□ -0.54
SMCHD1-212ENST00000585229 NEK1Q96PY6 1258 aa11.69□□□□□ -0.54
SMCHD1-212ENST00000585229 MCM9Q9NXL9 1143 aa11.69□□□□□ -0.54
SMCHD1-212ENST00000585229 CNTNAP1P78357 1384 aa11.68□□□□□ -0.54
SMCHD1-212ENST00000585229 NEDD4P46934 1319 aa11.68□□□□□ -0.54
SMCHD1-212ENST00000585229 GLTPD2A6NH11 291 aa11.68□□□□□ -0.54
SMCHD1-212ENST00000585229 H7C1D1 291 aa11.68□□□□□ -0.54
SMCHD1-212ENST00000585229 HRO43593 1189 aa11.68□□□□□ -0.54
SMCHD1-212ENST00000585229 DDNO94850 711 aaPredicted RBP11.68□□□□□ -0.54
SMCHD1-212ENST00000585229 EGFRP00533 1210 aa11.68□□□□□ -0.54
SMCHD1-212ENST00000585229 CYP2D6P10635 497 aa11.68□□□□□ -0.54
SMCHD1-212ENST00000585229 CASTP20810 708 aaKnown RBP11.68□□□□□ -0.54
SMCHD1-212ENST00000585229 RPS6KB1P23443 525 aa11.68□□□□□ -0.54
SMCHD1-212ENST00000585229 ANP32AP39687 249 aaKnown RBP11.68□□□□□ -0.54
SMCHD1-212ENST00000585229 CTDSPL2Q05D32 466 aa11.68□□□□□ -0.54
SMCHD1-212ENST00000585229 GABPAQ06546 454 aa11.68□□□□□ -0.54
SMCHD1-212ENST00000585229 COL9A3Q14050 684 aaPredicted RBP11.68□□□□□ -0.54
SMCHD1-212ENST00000585229 KIF4BQ2VIQ3 1234 aa11.68□□□□□ -0.54
SMCHD1-212ENST00000585229 BLOC1S2Q6QNY1 142 aa11.68□□□□□ -0.54
SMCHD1-212ENST00000585229 RUFY3Q7L099 469 aa11.68□□□□□ -0.54
SMCHD1-212ENST00000585229 FAM83AQ86UY5 434 aa11.68□□□□□ -0.54
SMCHD1-212ENST00000585229 METTL16Q86W50 562 aaKnown RBP11.68□□□□□ -0.54
SMCHD1-212ENST00000585229 FBXL16Q8N461 479 aa11.68□□□□□ -0.54
SMCHD1-212ENST00000585229 TTC13Q8NBP0 860 aa11.68□□□□□ -0.54
SMCHD1-212ENST00000585229 MTA3Q9BTC8 594 aa11.68□□□□□ -0.54
SMCHD1-212ENST00000585229 AGXT2Q9BYV1 514 aa11.68□□□□□ -0.54
SMCHD1-212ENST00000585229 EHD4Q9H223 541 aa11.68□□□□□ -0.54
SMCHD1-212ENST00000585229 RNF41Q9H4P4 317 aaPredicted RBP11.68□□□□□ -0.54
SMCHD1-212ENST00000585229 CNNM2Q9H8M5 875 aa11.68□□□□□ -0.54
SMCHD1-212ENST00000585229 TMOD2Q9NZR1 351 aa11.68□□□□□ -0.54
SMCHD1-212ENST00000585229 CYP2D7A0A087X1C5 515 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms