RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 BACE1P56817 501 aa24.91■■□□□ 1.58
SHMT1-209ENST00000582653 MAP3K12Q12852 859 aa24.91■■□□□ 1.58
SHMT1-209ENST00000582653 TRIM34Q9BYJ4 488 aa24.91■■□□□ 1.58
SHMT1-209ENST00000582653 RNF208Q9H0X6 261 aa24.91■■□□□ 1.58
SHMT1-209ENST00000582653 SIPA1L1O43166 1804 aa24.91■■□□□ 1.58
SHMT1-209ENST00000582653 CDK5RAP2Q96SN8 1893 aa24.9■■□□□ 1.58
SHMT1-209ENST00000582653 C19orf81C9J6K1 198 aa24.9■■□□□ 1.58
SHMT1-209ENST00000582653 IFIT2P09913 472 aaKnown RBP24.9■■□□□ 1.58
SHMT1-209ENST00000582653 COA7Q96BR5 231 aa24.9■■□□□ 1.58
SHMT1-209ENST00000582653 CHMP4BQ9H444 224 aaKnown RBP24.9■■□□□ 1.58
SHMT1-209ENST00000582653 MGAMO43451 1857 aa24.89■■□□□ 1.58
SHMT1-209ENST00000582653 HLA-DOAP06340 250 aa24.89■■□□□ 1.58
SHMT1-209ENST00000582653 PDE3AQ14432 1141 aa24.89■■□□□ 1.58
SHMT1-209ENST00000582653 SHROOM1Q2M3G4 852 aaPredicted RBP24.89■■□□□ 1.58
SHMT1-209ENST00000582653 SHISA4Q96DD7 197 aa24.89■■□□□ 1.58
SHMT1-209ENST00000582653 ASCC2Q9H1I8 757 aaPredicted RBP24.89■■□□□ 1.58
SHMT1-209ENST00000582653 RAB11FIP3O75154 756 aa24.88■■□□□ 1.57
SHMT1-209ENST00000582653 HOXA7P31268 230 aaPredicted RBP24.88■■□□□ 1.57
SHMT1-209ENST00000582653 USP5P45974 858 aa24.88■■□□□ 1.57
SHMT1-209ENST00000582653 DNAJC2Q99543 621 aaKnown RBP24.88■■□□□ 1.57
SHMT1-209ENST00000582653 PCDH10Q9P2E7 1040 aa24.88■■□□□ 1.57
SHMT1-209ENST00000582653 FOCADQ5VW36 1801 aa24.88■■□□□ 1.57
SHMT1-209ENST00000582653 ATAD5Q96QE3 1844 aa24.87■■□□□ 1.57
SHMT1-209ENST00000582653 USP17L10C9JJH3 530 aa24.87■■□□□ 1.57
SHMT1-209ENST00000582653 GDF11O95390 407 aa24.87■■□□□ 1.57
SHMT1-209ENST00000582653 MTMR2Q13614 643 aa24.87■■□□□ 1.57
SHMT1-209ENST00000582653 EDC3Q96F86 508 aaKnown RBP24.87■■□□□ 1.57
SHMT1-209ENST00000582653 TMOD4Q9NZQ9 345 aa24.87■■□□□ 1.57
SHMT1-209ENST00000582653 GOLIM4O00461 696 aa24.86■■□□□ 1.57
SHMT1-209ENST00000582653 CAPN2P17655 700 aa24.86■■□□□ 1.57
SHMT1-209ENST00000582653 TTF1Q15361 905 aaPredicted RBP24.86■■□□□ 1.57
SHMT1-209ENST00000582653 TATDN1Q6P1N9 297 aa24.86■■□□□ 1.57
SHMT1-209ENST00000582653 SGPL1O95470 568 aa24.85■■□□□ 1.57
SHMT1-209ENST00000582653 ELNP15502 786 aa24.85■■□□□ 1.57
SHMT1-209ENST00000582653 HABP4Q5JVS0 413 aaKnown RBP24.85■■□□□ 1.57
SHMT1-209ENST00000582653 SLC9C2Q5TAH2 1124 aa24.85■■□□□ 1.57
SHMT1-209ENST00000582653 P2RX7Q99572 595 aaKnown RBP24.85■■□□□ 1.57
SHMT1-209ENST00000582653 RIOK1Q9BRS2 568 aaKnown RBP24.85■■□□□ 1.57
SHMT1-209ENST00000582653 UNC93B1Q9H1C4 597 aa24.85■■□□□ 1.57
SHMT1-209ENST00000582653 MORF4L1Q9UBU8 362 aa24.85■■□□□ 1.57
SHMT1-209ENST00000582653 ZBTB21Q9ULJ3 1066 aa24.85■■□□□ 1.57
SHMT1-209ENST00000582653 PDE6AP16499 860 aa24.84■■□□□ 1.57
SHMT1-209ENST00000582653 UBE2Q1Q7Z7E8 422 aa24.84■■□□□ 1.57
SHMT1-209ENST00000582653 TTC6Q86TZ1 520 aa24.84■■□□□ 1.57
SHMT1-209ENST00000582653 U2AF1L4Q8WU68 220 aaKnown RBP24.84■■□□□ 1.57
SHMT1-209ENST00000582653 PPIL4Q8WUA2 492 aaKnown RBP eCLIP24.84■■□□□ 1.57
SHMT1-209ENST00000582653 EHD4Q9H223 541 aa24.84■■□□□ 1.57
SHMT1-209ENST00000582653 GJD2Q9UKL4 321 aa24.84■■□□□ 1.57
SHMT1-209ENST00000582653 LOC285556D6RIA3 1793 aa24.83■■□□□ 1.57
SHMT1-209ENST00000582653 MAGEB6P1A0A0J9YX57 407 aa24.83■■□□□ 1.57
SHMT1-209ENST00000582653 INHAP05111 366 aa24.83■■□□□ 1.57
SHMT1-209ENST00000582653 IRX3P78415 501 aaPredicted RBP24.83■■□□□ 1.57
SHMT1-209ENST00000582653 BOLA2Q9H3K6 86 aa24.83■■□□□ 1.57
SHMT1-209ENST00000582653 SERPINB13Q9UIV8 391 aa24.83■■□□□ 1.57
SHMT1-209ENST00000582653 SMARCA5O60264 1052 aaPredicted RBP24.82■■□□□ 1.56
SHMT1-209ENST00000582653 EMILIN3Q9NT22 766 aa24.82■■□□□ 1.56
SHMT1-209ENST00000582653 ZNF532Q9HCE3 1301 aa24.82■■□□□ 1.56
SHMT1-209ENST00000582653 GH2P01242 217 aa24.81■■□□□ 1.56
SHMT1-209ENST00000582653 SLFNL1Q499Z3 407 aa24.81■■□□□ 1.56
SHMT1-209ENST00000582653 USP17L2Q6R6M4 530 aa24.81■■□□□ 1.56
SHMT1-209ENST00000582653 DPF3Q92784 378 aa24.81■■□□□ 1.56
SHMT1-209ENST00000582653 TAOK2Q9UL54 1235 aa24.81■■□□□ 1.56
SHMT1-209ENST00000582653 TCRBV5S4A2TA0A5A2 114 aa24.8■■□□□ 1.56
SHMT1-209ENST00000582653 ATP5JP18859 108 aa24.8■■□□□ 1.56
SHMT1-209ENST00000582653 PLCD1P51178 756 aa24.8■■□□□ 1.56
SHMT1-209ENST00000582653 HERVK_113P62684 666 aa24.8■■□□□ 1.56
SHMT1-209ENST00000582653 CERKLQ49MI3 558 aaPredicted RBP24.8■■□□□ 1.56
SHMT1-209ENST00000582653 PAK6Q9NQU5 681 aaPredicted RBP24.8■■□□□ 1.56
SHMT1-209ENST00000582653 PAG1Q9NWQ8 432 aa24.8■■□□□ 1.56
SHMT1-209ENST00000582653 RBPJLQ9UBG7 517 aa24.8■■□□□ 1.56
SHMT1-209ENST00000582653 MYH1P12882 1939 aa24.8■■□□□ 1.56
SHMT1-209ENST00000582653 H0YGN5 161 aa24.79■■□□□ 1.56
SHMT1-209ENST00000582653 GPRC5AQ8NFJ5 357 aa24.79■■□□□ 1.56
SHMT1-209ENST00000582653 HTATIP2Q9BUP3 242 aa24.79■■□□□ 1.56
SHMT1-209ENST00000582653 LRRCC1Q9C099 1032 aa24.79■■□□□ 1.56
SHMT1-209ENST00000582653 DOCK3Q8IZD9 2030 aa24.78■■□□□ 1.56
SHMT1-209ENST00000582653 TFRCP02786 760 aaKnown RBP24.78■■□□□ 1.56
SHMT1-209ENST00000582653 EVX2Q03828 476 aa24.78■■□□□ 1.56
SHMT1-209ENST00000582653 DEFB118Q96PH6 123 aa24.78■■□□□ 1.56
SHMT1-209ENST00000582653 TXNRD2Q9NNW7 524 aa24.78■■□□□ 1.56
SHMT1-209ENST00000582653 COLQQ9Y215 455 aaPredicted RBP24.78■■□□□ 1.56
SHMT1-209ENST00000582653 CHGBP05060 677 aa24.77■■□□□ 1.56
SHMT1-209ENST00000582653 POLR3DP05423 398 aaPredicted RBP24.77■■□□□ 1.56
SHMT1-209ENST00000582653 LCORLQ8N3X6 602 aa24.77■■□□□ 1.56
SHMT1-209ENST00000582653 GTF3C2Q8WUA4 911 aaPredicted RBP24.77■■□□□ 1.56
SHMT1-209ENST00000582653 SDR42E1Q8WUS8 393 aa24.77■■□□□ 1.56
SHMT1-209ENST00000582653 C12orf42Q96LP6 360 aa24.77■■□□□ 1.56
SHMT1-209ENST00000582653 HAUS7Q99871 368 aa24.77■■□□□ 1.56
SHMT1-209ENST00000582653 CRNKL1Q9BZJ0 848 aaKnown RBP24.77■■□□□ 1.56
SHMT1-209ENST00000582653 ABCB5Q2M3G0 1257 aa24.76■■□□□ 1.55
SHMT1-209ENST00000582653 Q3C1V9 767 aa24.76■■□□□ 1.55
SHMT1-209ENST00000582653 CRISPLD2Q9H0B8 497 aa24.76■■□□□ 1.55
SHMT1-209ENST00000582653 ARMT1Q9H993 441 aa24.76■■□□□ 1.55
SHMT1-209ENST00000582653 CABP5Q9NP86 173 aa24.76■■□□□ 1.55
SHMT1-209ENST00000582653 PEX10O60683 326 aa24.75■■□□□ 1.55
SHMT1-209ENST00000582653 FARP2O94887 1054 aaPredicted RBP24.75■■□□□ 1.55
SHMT1-209ENST00000582653 HMGCRP04035 888 aa24.75■■□□□ 1.55
SHMT1-209ENST00000582653 SHMT1P34896 483 aa24.75■■□□□ 1.55
SHMT1-209ENST00000582653 ADD2P35612 726 aa24.75■■□□□ 1.55
SHMT1-209ENST00000582653 USP14P54578 494 aa24.75■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms