RNA–Protein interactions for RNA: ENST00000577751.5

SS18-208, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-208ENST00000577751 R3HDMLQ9H3Y0 253 aa23.2■■□□□ 1.3
SS18-208ENST00000577751 ZCCHC17Q9NP64 241 aaKnown RBP23.2■■□□□ 1.3
SS18-208ENST00000577751 A0A0G2JLL6 359 aaPredicted RBP23.19■■□□□ 1.3
SS18-208ENST00000577751 USP17L5A8MUK1 530 aa23.19■■□□□ 1.3
SS18-208ENST00000577751 TRIM6-TRIM34B2RNG4 842 aa23.19■■□□□ 1.3
SS18-208ENST00000577751 BTBD19C9JJ37 291 aa23.19■■□□□ 1.3
SS18-208ENST00000577751 CTR9Q6PD62 1173 aa23.19■■□□□ 1.3
SS18-208ENST00000577751 PRRT2Q7Z6L0 340 aaPredicted RBP23.19■■□□□ 1.3
SS18-208ENST00000577751 GPR25O00155 361 aa23.18■■□□□ 1.3
SS18-208ENST00000577751 GDF11O95390 407 aa23.18■■□□□ 1.3
SS18-208ENST00000577751 SHROOM1Q2M3G4 852 aaPredicted RBP23.18■■□□□ 1.3
SS18-208ENST00000577751 SBK1Q52WX2 424 aa23.18■■□□□ 1.3
SS18-208ENST00000577751 ZBTB21Q9ULJ3 1066 aa23.18■■□□□ 1.3
SS18-208ENST00000577751 CYP2D7A0A087X1C5 515 aa23.17■■□□□ 1.3
SS18-208ENST00000577751 PATL2C9JE40 543 aaKnown RBP23.17■■□□□ 1.3
SS18-208ENST00000577751 SPP2Q13103 211 aa23.17■■□□□ 1.3
SS18-208ENST00000577751 CRHR2Q13324 411 aa23.17■■□□□ 1.3
SS18-208ENST00000577751 CERKLQ49MI3 558 aaPredicted RBP23.17■■□□□ 1.3
SS18-208ENST00000577751 ANKRD23Q86SG2 305 aa23.17■■□□□ 1.3
SS18-208ENST00000577751 ZNF280CQ8ND82 737 aa23.17■■□□□ 1.3
SS18-208ENST00000577751 RILPL2Q969X0 211 aa23.17■■□□□ 1.3
SS18-208ENST00000577751 WDR18Q9BV38 432 aa23.17■■□□□ 1.3
SS18-208ENST00000577751 HELLSQ9NRZ9 838 aa23.17■■□□□ 1.3
SS18-208ENST00000577751 ARPP21Q9UBL0 812 aaPredicted RBP23.17■■□□□ 1.3
SS18-208ENST00000577751 SWAP70Q9UH65 585 aa23.17■■□□□ 1.3
SS18-208ENST00000577751 MYH8P13535 1937 aa23.16■■□□□ 1.3
SS18-208ENST00000577751 TRIM75PA6NK02 468 aa23.16■■□□□ 1.3
SS18-208ENST00000577751 SMIM22K7EJ46 135 aa23.16■■□□□ 1.3
SS18-208ENST00000577751 GPAT2Q6NUI2 795 aa23.16■■□□□ 1.3
SS18-208ENST00000577751 FASTKD5Q7L8L6 764 aaKnown RBP23.16■■□□□ 1.3
SS18-208ENST00000577751 AMOTL1Q8IY63 956 aa23.16■■□□□ 1.3
SS18-208ENST00000577751 AS3MTQ9HBK9 375 aa23.16■■□□□ 1.3
SS18-208ENST00000577751 EPB41L4AQ9HCS5 686 aaPredicted RBP23.16■■□□□ 1.3
SS18-208ENST00000577751 GH2P01242 217 aa23.15■■□□□ 1.3
SS18-208ENST00000577751 TAF1CQ15572 869 aaPredicted RBP23.15■■□□□ 1.3
SS18-208ENST00000577751 IFNL3Q8IZI9 196 aa23.15■■□□□ 1.3
SS18-208ENST00000577751 ZNF296Q8WUU4 475 aaPredicted RBP23.15■■□□□ 1.3
SS18-208ENST00000577751 DYNLL2Q96FJ2 89 aa23.15■■□□□ 1.3
SS18-208ENST00000577751 SDSP20132 328 aa23.14■■□□□ 1.29
SS18-208ENST00000577751 ABCB5Q2M3G0 1257 aa23.14■■□□□ 1.29
SS18-208ENST00000577751 SH3D19Q5HYK7 790 aa23.14■■□□□ 1.29
SS18-208ENST00000577751 CCDC129Q6ZRS4 1044 aa23.14■■□□□ 1.29
SS18-208ENST00000577751 C16orf86Q6ZW13 317 aa23.14■■□□□ 1.29
SS18-208ENST00000577751 SLC44A5Q8NCS7 719 aa23.14■■□□□ 1.29
SS18-208ENST00000577751 FAM227BQ96M60 508 aa23.14■■□□□ 1.29
SS18-208ENST00000577751 ZFYVE28Q9HCC9 887 aa23.14■■□□□ 1.29
SS18-208ENST00000577751 LOC285556D6RIA3 1793 aa23.14■■□□□ 1.29
SS18-208ENST00000577751 A0A0D9SFI3 127 aa23.13■■□□□ 1.29
SS18-208ENST00000577751 PDHXO00330 501 aa23.13■■□□□ 1.29
SS18-208ENST00000577751 FOXP2O15409 715 aa23.13■■□□□ 1.29
SS18-208ENST00000577751 CDK8P49336 464 aa23.13■■□□□ 1.29
SS18-208ENST00000577751 MCMDC2Q4G0Z9 681 aa23.13■■□□□ 1.29
SS18-208ENST00000577751 TTC22Q5TAA0 569 aa23.13■■□□□ 1.29
SS18-208ENST00000577751 CENPQQ7L2Z9 268 aaPredicted RBP23.13■■□□□ 1.29
SS18-208ENST00000577751 APPP05067 770 aa23.12■■□□□ 1.29
SS18-208ENST00000577751 GSPT1P15170 499 aaKnown RBP23.12■■□□□ 1.29
SS18-208ENST00000577751 GUCY1A2P33402 732 aa23.12■■□□□ 1.29
SS18-208ENST00000577751 BACE1P56817 501 aa23.12■■□□□ 1.29
SS18-208ENST00000577751 NMIQ13287 307 aaPredicted RBP23.12■■□□□ 1.29
SS18-208ENST00000577751 PROCA1Q8NCQ7 364 aaPredicted RBP23.12■■□□□ 1.29
SS18-208ENST00000577751 CABP5Q9NP86 173 aa23.12■■□□□ 1.29
SS18-208ENST00000577751 SLC45A1Q9Y2W3 748 aa23.12■■□□□ 1.29
SS18-208ENST00000577751 ROBO3Q96MS0 1386 aa23.12■■□□□ 1.29
SS18-208ENST00000577751 TLR2O60603 784 aa23.11■■□□□ 1.29
SS18-208ENST00000577751 FKTNO75072 461 aa23.11■■□□□ 1.29
SS18-208ENST00000577751 CENPBP07199 599 aaPredicted RBP23.11■■□□□ 1.29
SS18-208ENST00000577751 TDO2P48775 406 aa23.11■■□□□ 1.29
SS18-208ENST00000577751 GADL1Q6ZQY3 521 aa23.11■■□□□ 1.29
SS18-208ENST00000577751 NACAP1Q9BZK3 213 aa23.11■■□□□ 1.29
SS18-208ENST00000577751 MINDY4BA8MYZ0 360 aa23.1■■□□□ 1.29
SS18-208ENST00000577751 C19orf81C9J6K1 198 aa23.1■■□□□ 1.29
SS18-208ENST00000577751 USP17L10C9JJH3 530 aa23.1■■□□□ 1.29
SS18-208ENST00000577751 HMGCS2P54868 508 aa23.1■■□□□ 1.29
SS18-208ENST00000577751 VPS53Q5VIR6 699 aa23.1■■□□□ 1.29
SS18-208ENST00000577751 CCDC17Q96LX7 622 aa23.1■■□□□ 1.29
SS18-208ENST00000577751 AGTPBP1Q9UPW5 1226 aa23.1■■□□□ 1.29
SS18-208ENST00000577751 RAB3GAP1Q15042 981 aa23.09■■□□□ 1.29
SS18-208ENST00000577751 TNS4Q8IZW8 715 aa23.09■■□□□ 1.29
SS18-208ENST00000577751 ADGRA2Q96PE1 1338 aa23.08■■□□□ 1.29
SS18-208ENST00000577751 DGKZQ13574 1117 aa23.08■■□□□ 1.29
SS18-208ENST00000577751 MTMR2Q13614 643 aa23.08■■□□□ 1.29
SS18-208ENST00000577751 SEPT2Q15019 361 aa23.08■■□□□ 1.29
SS18-208ENST00000577751 TREML2Q5T2D2 321 aa23.08■■□□□ 1.29
SS18-208ENST00000577751 TMEM179Q6ZVK1 233 aa23.08■■□□□ 1.29
SS18-208ENST00000577751 ZNF589Q86UQ0 364 aaPredicted RBP23.08■■□□□ 1.29
SS18-208ENST00000577751 NAPBQ9H115 298 aa23.08■■□□□ 1.29
SS18-208ENST00000577751 HIP1O00291 1037 aa23.07■■□□□ 1.28
SS18-208ENST00000577751 NEFLP07196 543 aa23.07■■□□□ 1.28
SS18-208ENST00000577751 AKR1B1P15121 316 aa23.07■■□□□ 1.28
SS18-208ENST00000577751 SP3Q02447 781 aa23.07■■□□□ 1.28
SS18-208ENST00000577751 ALX1Q15699 326 aa23.07■■□□□ 1.28
SS18-208ENST00000577751 C17orf99Q6UX52 265 aa23.07■■□□□ 1.28
SS18-208ENST00000577751 CCDC171Q6TFL3 1326 aa23.07■■□□□ 1.28
SS18-208ENST00000577751 MPHOSPH10O00566 681 aaKnown RBP23.06■■□□□ 1.28
SS18-208ENST00000577751 CYP2C8P10632 490 aa23.06■■□□□ 1.28
SS18-208ENST00000577751 PARK7Q99497 189 aaKnown RBP23.06■■□□□ 1.28
SS18-208ENST00000577751 KIAA1683Q9H0B3 1180 aa23.06■■□□□ 1.28
SS18-208ENST00000577751 EMILIN3Q9NT22 766 aa23.06■■□□□ 1.28
SS18-208ENST00000577751 GREB1LQ9C091 1923 aaPredicted RBP23.06■■□□□ 1.28
SS18-208ENST00000577751 HSPD1P10809 573 aaKnown RBP23.05■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms