RNA–Protein interactions for RNA: ENST00000576940.1

NPLOC4-220, Transcript of NPL4 homolog, ubiquitin recognition factor, humanhuman

TSL 5

Gene NPLOC4, Length 216 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPLOC4-220ENST00000576940 PAGR1Q9BTK6 254 aa12.5□□□□□ -0.41
NPLOC4-220ENST00000576940 SENP6Q9GZR1 1112 aaPredicted RBP12.5□□□□□ -0.41
NPLOC4-220ENST00000576940 SMC4Q9NTJ3 1288 aa12.5□□□□□ -0.41
NPLOC4-220ENST00000576940 PI4KBQ9UBF8 816 aa12.5□□□□□ -0.41
NPLOC4-220ENST00000576940 HERC5Q9UII4 1024 aaKnown RBP12.5□□□□□ -0.41
NPLOC4-220ENST00000576940 AKAP2Q9Y2D5 859 aa12.5□□□□□ -0.41
NPLOC4-220ENST00000576940 NDUFB9Q9Y6M9 179 aa12.5□□□□□ -0.41
NPLOC4-220ENST00000576940 LOC285556D6RIA3 1793 aa12.5□□□□□ -0.41
NPLOC4-220ENST00000576940 USP17L10C9JJH3 530 aa12.49□□□□□ -0.41
NPLOC4-220ENST00000576940 E9PSI1 815 aa12.49□□□□□ -0.41
NPLOC4-220ENST00000576940 GDF11O95390 407 aa12.49□□□□□ -0.41
NPLOC4-220ENST00000576940 MAP4K4O95819 1239 aaPredicted RBP12.49□□□□□ -0.41
NPLOC4-220ENST00000576940 ERVK-9P63128 1117 aa12.49□□□□□ -0.41
NPLOC4-220ENST00000576940 ERVK-24P63145 666 aa12.49□□□□□ -0.41
NPLOC4-220ENST00000576940 SLFN5Q08AF3 891 aa12.49□□□□□ -0.41
NPLOC4-220ENST00000576940 PDE3AQ14432 1141 aa12.49□□□□□ -0.41
NPLOC4-220ENST00000576940 MORN1Q5T089 497 aa12.49□□□□□ -0.41
NPLOC4-220ENST00000576940 CCAR1Q8IX12 1150 aaKnown RBP12.49□□□□□ -0.41
NPLOC4-220ENST00000576940 SOCS4Q8WXH5 440 aa12.49□□□□□ -0.41
NPLOC4-220ENST00000576940 DNAJC18Q9H819 358 aa12.49□□□□□ -0.41
NPLOC4-220ENST00000576940 EMILIN3Q9NT22 766 aa12.49□□□□□ -0.41
NPLOC4-220ENST00000576940 AATFQ9NY61 560 aaKnown RBP eCLIP12.49□□□□□ -0.41
NPLOC4-220ENST00000576940 DNAH12Q6ZR08 3092 aa12.48□□□□□ -0.41
NPLOC4-220ENST00000576940 ATAD5Q96QE3 1844 aa12.48□□□□□ -0.41
NPLOC4-220ENST00000576940 C19orf81C9J6K1 198 aa12.48□□□□□ -0.41
NPLOC4-220ENST00000576940 SRGAP3O43295 1099 aa12.48□□□□□ -0.41
NPLOC4-220ENST00000576940 ASNSP08243 561 aa12.48□□□□□ -0.41
NPLOC4-220ENST00000576940 MAPK4P31152 587 aa12.48□□□□□ -0.41
NPLOC4-220ENST00000576940 RGS2P41220 211 aa12.48□□□□□ -0.41
NPLOC4-220ENST00000576940 ATN1P54259 1190 aaPredicted RBP12.48□□□□□ -0.41
NPLOC4-220ENST00000576940 GORABQ5T7V8 394 aa12.48□□□□□ -0.41
NPLOC4-220ENST00000576940 PLEKHH3Q7Z736 793 aa12.48□□□□□ -0.41
NPLOC4-220ENST00000576940 MAPKAPK5Q8IW41 473 aa12.48□□□□□ -0.41
NPLOC4-220ENST00000576940 TRMT44Q8IYL2 757 aaKnown RBP12.48□□□□□ -0.41
NPLOC4-220ENST00000576940 TGFBRAP1Q8WUH2 860 aa12.48□□□□□ -0.41
NPLOC4-220ENST00000576940 FLRT1Q9NZU1 646 aa12.48□□□□□ -0.41
NPLOC4-220ENST00000576940 LRP2BPQ9P2M1 347 aa12.48□□□□□ -0.41
NPLOC4-220ENST00000576940 PALD1Q9ULE6 856 aa12.48□□□□□ -0.41
NPLOC4-220ENST00000576940 EYSQ5T1H1 3165 aa12.48□□□□□ -0.41
NPLOC4-220ENST00000576940 SPTBN5Q9NRC6 3674 aaKnown RBP12.48□□□□□ -0.41
NPLOC4-220ENST00000576940 MCAMP43121 646 aa12.47□□□□□ -0.41
NPLOC4-220ENST00000576940 FAM109BQ6ICB4 259 aaPredicted RBP12.47□□□□□ -0.41
NPLOC4-220ENST00000576940 FOXP4Q8IVH2 680 aaPredicted RBP12.47□□□□□ -0.41
NPLOC4-220ENST00000576940 EDC3Q96F86 508 aaKnown RBP12.47□□□□□ -0.41
NPLOC4-220ENST00000576940 DHX36Q9H2U1 1008 aaKnown RBP12.47□□□□□ -0.41
NPLOC4-220ENST00000576940 SNRKQ9NRH2 765 aa12.47□□□□□ -0.41
NPLOC4-220ENST00000576940 HDAC5Q9UQL6 1122 aa12.47□□□□□ -0.41
NPLOC4-220ENST00000576940 COL2A1P02458 1487 aaPredicted RBP12.46□□□□□ -0.41
NPLOC4-220ENST00000576940 CNMDO75829 334 aa12.46□□□□□ -0.41
NPLOC4-220ENST00000576940 ARID4AP29374 1257 aaPredicted RBP12.46□□□□□ -0.41
NPLOC4-220ENST00000576940 MAP2K5Q13163 448 aa12.46□□□□□ -0.41
NPLOC4-220ENST00000576940 ADGRA1Q86SQ6 560 aa12.46□□□□□ -0.41
NPLOC4-220ENST00000576940 LBHD1Q9BQE6 289 aaPredicted RBP12.46□□□□□ -0.41
NPLOC4-220ENST00000576940 CWC22Q9HCG8 908 aaKnown RBP12.46□□□□□ -0.41
NPLOC4-220ENST00000576940 BAG3O95817 575 aa12.45□□□□□ -0.42
NPLOC4-220ENST00000576940 CNGA1P29973 690 aa12.45□□□□□ -0.42
NPLOC4-220ENST00000576940 ZYXQ15942 572 aaKnown RBP12.45□□□□□ -0.42
NPLOC4-220ENST00000576940 WDR78Q5VTH9 848 aa12.45□□□□□ -0.42
NPLOC4-220ENST00000576940 NAA16Q6N069 864 aaPredicted RBP12.45□□□□□ -0.42
NPLOC4-220ENST00000576940 USP17L2Q6R6M4 530 aa12.45□□□□□ -0.42
NPLOC4-220ENST00000576940 METTL16Q86W50 562 aaKnown RBP12.45□□□□□ -0.42
NPLOC4-220ENST00000576940 CRACR2BQ8N4Y2 399 aaPredicted RBP12.45□□□□□ -0.42
NPLOC4-220ENST00000576940 CDX2Q99626 313 aaPredicted RBP12.45□□□□□ -0.42
NPLOC4-220ENST00000576940 APBA2Q99767 749 aa12.45□□□□□ -0.42
NPLOC4-220ENST00000576940 NOL10Q9BSC4 688 aaKnown RBP12.45□□□□□ -0.42
NPLOC4-220ENST00000576940 TRIM34Q9BYJ4 488 aa12.45□□□□□ -0.42
NPLOC4-220ENST00000576940 API5Q9BZZ5 524 aaKnown RBP12.45□□□□□ -0.42
NPLOC4-220ENST00000576940 SAP30BPQ9UHR5 308 aaKnown RBP12.45□□□□□ -0.42
NPLOC4-220ENST00000576940 ZBTB21Q9ULJ3 1066 aa12.45□□□□□ -0.42
NPLOC4-220ENST00000576940 CDH23Q9H251 3354 aa12.45□□□□□ -0.42
NPLOC4-220ENST00000576940 SIPA1L1O43166 1804 aa12.44□□□□□ -0.42
NPLOC4-220ENST00000576940 FLT1P17948 1338 aa12.44□□□□□ -0.42
NPLOC4-220ENST00000576940 CYP2C19P33261 490 aa12.44□□□□□ -0.42
NPLOC4-220ENST00000576940 PPP4CP60510 307 aa12.44□□□□□ -0.42
NPLOC4-220ENST00000576940 SHHQ15465 462 aa12.44□□□□□ -0.42
NPLOC4-220ENST00000576940 ZNF697Q5TEC3 545 aa12.44□□□□□ -0.42
NPLOC4-220ENST00000576940 MFSD14CQ5VZR4 134 aa12.44□□□□□ -0.42
NPLOC4-220ENST00000576940 NPLOC4Q8TAT6 608 aa12.44□□□□□ -0.42
NPLOC4-220ENST00000576940 SEMA6BQ9H3T3 888 aa12.44□□□□□ -0.42
NPLOC4-220ENST00000576940 DDX20Q9UHI6 824 aaKnown RBP12.44□□□□□ -0.42
NPLOC4-220ENST00000576940 GH2P01242 217 aa12.43□□□□□ -0.42
NPLOC4-220ENST00000576940 UQCRFS1P1P0C7P4 283 aa12.43□□□□□ -0.42
NPLOC4-220ENST00000576940 PTPREP23469 700 aa12.43□□□□□ -0.42
NPLOC4-220ENST00000576940 DYNLL1P63167 89 aaKnown RBP12.43□□□□□ -0.42
NPLOC4-220ENST00000576940 ATP2B2Q01814 1243 aa12.43□□□□□ -0.42
NPLOC4-220ENST00000576940 G3BP1Q13283 466 aaKnown RBP eCLIP12.43□□□□□ -0.42
NPLOC4-220ENST00000576940 MTX1Q13505 466 aa12.43□□□□□ -0.42
NPLOC4-220ENST00000576940 C9orf50Q5SZB4 431 aa12.43□□□□□ -0.42
NPLOC4-220ENST00000576940 GJC2Q5T442 439 aaPredicted RBP12.43□□□□□ -0.42
NPLOC4-220ENST00000576940 CATSPERGQ6ZRH7 1159 aa12.43□□□□□ -0.42
NPLOC4-220ENST00000576940 TRPV1Q8NER1 839 aa12.43□□□□□ -0.42
NPLOC4-220ENST00000576940 LPAR1Q92633 364 aa12.43□□□□□ -0.42
NPLOC4-220ENST00000576940 PRKAG2Q9UGJ0 569 aa12.43□□□□□ -0.42
NPLOC4-220ENST00000576940 RABGAP1Q9Y3P9 1069 aa12.43□□□□□ -0.42
NPLOC4-220ENST00000576940 PNMA6EA0A0J9YXQ4 647 aa12.42□□□□□ -0.42
NPLOC4-220ENST00000576940 USP17L15C9J2P7 530 aa12.42□□□□□ -0.42
NPLOC4-220ENST00000576940 USP17L13C9JLJ4 530 aa12.42□□□□□ -0.42
NPLOC4-220ENST00000576940 USP17L11C9JVI0 530 aa12.42□□□□□ -0.42
NPLOC4-220ENST00000576940 USP17L18D6R9N7 530 aa12.42□□□□□ -0.42
NPLOC4-220ENST00000576940 USP17L22D6RA61 530 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms