RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 LEMD3Q9Y2U8 911 aa8.84□□□□□ -0.99
NUP88-213ENST00000576862 SLITRK5O94991 958 aa8.83□□□□□ -1
NUP88-213ENST00000576862 HTR3BO95264 441 aa8.83□□□□□ -1
NUP88-213ENST00000576862 TCF3P15923 654 aa8.83□□□□□ -1
NUP88-213ENST00000576862 SEZ6Q53EL9 994 aa8.83□□□□□ -1
NUP88-213ENST00000576862 DUSP27Q5VZP5 1158 aa8.83□□□□□ -1
NUP88-213ENST00000576862 DPH2Q9BQC3 489 aaPredicted RBP8.83□□□□□ -1
NUP88-213ENST00000576862 IGSF5Q9NSI5 407 aa8.83□□□□□ -1
NUP88-213ENST00000576862 EPB41L3Q9Y2J2 1087 aaPredicted RBP8.83□□□□□ -1
NUP88-213ENST00000576862 U3KQE9 123 aa8.83□□□□□ -1
NUP88-213ENST00000576862 UPK3BL1B0FP48 263 aa8.82□□□□□ -1
NUP88-213ENST00000576862 UPK3BL2E5RIL1 263 aa8.82□□□□□ -1
NUP88-213ENST00000576862 DNAJA2O60884 412 aa8.82□□□□□ -1
NUP88-213ENST00000576862 EOMESO95936 686 aa8.82□□□□□ -1
NUP88-213ENST00000576862 FOSL1P15407 271 aa8.82□□□□□ -1
NUP88-213ENST00000576862 CD97P48960 835 aa8.82□□□□□ -1
NUP88-213ENST00000576862 CYP27C1Q4G0S4 372 aa8.82□□□□□ -1
NUP88-213ENST00000576862 SLC6A19Q695T7 634 aa8.82□□□□□ -1
NUP88-213ENST00000576862 MFSD2AQ8NA29 543 aa8.82□□□□□ -1
NUP88-213ENST00000576862 RIN3Q8TB24 985 aa8.82□□□□□ -1
NUP88-213ENST00000576862 NKD1Q969G9 470 aa8.82□□□□□ -1
NUP88-213ENST00000576862 RBAK-RBAKDNI3L0D1 243 aa8.81□□□□□ -1
NUP88-213ENST00000576862 ATE1O95260 518 aa8.81□□□□□ -1
NUP88-213ENST00000576862 CLCQ05315 142 aa8.81□□□□□ -1
NUP88-213ENST00000576862 PAK2Q13177 524 aa8.81□□□□□ -1
NUP88-213ENST00000576862 XAGE3Q8WTP9 111 aa8.81□□□□□ -1
NUP88-213ENST00000576862 HEXIM2Q96MH2 286 aaKnown RBP8.81□□□□□ -1
NUP88-213ENST00000576862 TGIF2Q9GZN2 237 aa8.81□□□□□ -1
NUP88-213ENST00000576862 EHMT1Q9H9B1 1298 aa8.81□□□□□ -1
NUP88-213ENST00000576862 PCDHB14Q9Y5E9 798 aa8.81□□□□□ -1
NUP88-213ENST00000576862 E9PSI1 815 aa8.8□□□□□ -1
NUP88-213ENST00000576862 CYP26A1O43174 497 aa8.8□□□□□ -1
NUP88-213ENST00000576862 COBLO75128 1261 aa8.8□□□□□ -1
NUP88-213ENST00000576862 SSTR4P31391 388 aa8.8□□□□□ -1
NUP88-213ENST00000576862 MIPEPQ99797 713 aa8.8□□□□□ -1
NUP88-213ENST00000576862 LRRC4CQ9HCJ2 640 aa8.8□□□□□ -1
NUP88-213ENST00000576862 CNTNAP4Q9C0A0 1308 aa8.8□□□□□ -1
NUP88-213ENST00000576862 CHURC1-FNTBB4DL54 471 aa8.79□□□□□ -1
NUP88-213ENST00000576862 MSMPQ1L6U9 139 aa8.79□□□□□ -1
NUP88-213ENST00000576862 REXO1Q8N1G1 1221 aaKnown RBP8.79□□□□□ -1
NUP88-213ENST00000576862 ACBD3Q9H3P7 528 aa8.79□□□□□ -1
NUP88-213ENST00000576862 KIAA1324LA8MWY0 1029 aaPredicted RBP8.78□□□□□ -1
NUP88-213ENST00000576862 GRIK1P39086 918 aa8.78□□□□□ -1
NUP88-213ENST00000576862 LRP8Q14114 963 aa8.78□□□□□ -1
NUP88-213ENST00000576862 LETMD1Q6P1Q0 360 aa8.78□□□□□ -1
NUP88-213ENST00000576862 INTS5Q6P9B9 1019 aaKnown RBP8.78□□□□□ -1
NUP88-213ENST00000576862 GK5Q6ZS86 529 aa8.78□□□□□ -1
NUP88-213ENST00000576862 SLFN12Q8IYM2 578 aa8.78□□□□□ -1
NUP88-213ENST00000576862 FAM181AQ8N9Y4 354 aa8.78□□□□□ -1
NUP88-213ENST00000576862 FAM13CQ8NE31 585 aa8.78□□□□□ -1
NUP88-213ENST00000576862 ZC3H7BQ9UGR2 993 aaKnown RBP8.78□□□□□ -1
NUP88-213ENST00000576862 HYAL3O43820 417 aaPredicted RBP8.77□□□□□ -1.01
NUP88-213ENST00000576862 SPINK2P20155 84 aa8.77□□□□□ -1.01
NUP88-213ENST00000576862 MCM4P33991 863 aa8.77□□□□□ -1.01
NUP88-213ENST00000576862 ZNF165P49910 485 aa8.77□□□□□ -1.01
NUP88-213ENST00000576862 OXCT1P55809 520 aa8.77□□□□□ -1.01
NUP88-213ENST00000576862 PPP1R13LQ8WUF5 828 aa8.77□□□□□ -1.01
NUP88-213ENST00000576862 KLHL3Q9UH77 587 aa8.77□□□□□ -1.01
NUP88-213ENST00000576862 SLC22A31A6NKX4 558 aa8.76□□□□□ -1.01
NUP88-213ENST00000576862 ERCC5P28715 1186 aaPredicted RBP8.76□□□□□ -1.01
NUP88-213ENST00000576862 GJA8P48165 433 aa8.76□□□□□ -1.01
NUP88-213ENST00000576862 TNNI2P48788 182 aa8.76□□□□□ -1.01
NUP88-213ENST00000576862 YARSP54577 528 aaKnown RBP8.76□□□□□ -1.01
NUP88-213ENST00000576862 ARTNQ5T4W7 220 aa8.76□□□□□ -1.01
NUP88-213ENST00000576862 DTX1Q86Y01 620 aa8.76□□□□□ -1.01
NUP88-213ENST00000576862 DNAJB8Q8NHS0 232 aa8.76□□□□□ -1.01
NUP88-213ENST00000576862 RASGRP4Q8TDF6 673 aa8.76□□□□□ -1.01
NUP88-213ENST00000576862 IGF2BP3O00425 579 aaKnown RBP eCLIP8.75□□□□□ -1.01
NUP88-213ENST00000576862 CDH24Q86UP0 819 aa8.75□□□□□ -1.01
NUP88-213ENST00000576862 CYB5D2Q8WUJ1 264 aa8.75□□□□□ -1.01
NUP88-213ENST00000576862 GPRASP2Q96D09 838 aa8.75□□□□□ -1.01
NUP88-213ENST00000576862 ANTXR1Q9H6X2 564 aa8.75□□□□□ -1.01
NUP88-213ENST00000576862 GINM1Q9NU53 330 aa8.75□□□□□ -1.01
NUP88-213ENST00000576862 GTF2IRD1Q9UHL9 959 aa8.75□□□□□ -1.01
NUP88-213ENST00000576862 SCO2A0A1W2PP80 73 aa8.74□□□□□ -1.01
NUP88-213ENST00000576862 OVOS1Q6IE37 1185 aa8.74□□□□□ -1.01
NUP88-213ENST00000576862 PLD6Q8N2A8 252 aaKnown RBP8.74□□□□□ -1.01
NUP88-213ENST00000576862 CCSER2Q9H7U1 834 aa8.74□□□□□ -1.01
NUP88-213ENST00000576862 MKNK2Q9HBH9 465 aa8.74□□□□□ -1.01
NUP88-213ENST00000576862 PRDM5Q9NQX1 630 aaPredicted RBP8.74□□□□□ -1.01
NUP88-213ENST00000576862 GMIPQ9P107 970 aa8.74□□□□□ -1.01
NUP88-213ENST00000576862 PLAGL2Q9UPG8 496 aa8.74□□□□□ -1.01
NUP88-213ENST00000576862 MAPK8IP1Q9UQF2 711 aa8.74□□□□□ -1.01
NUP88-213ENST00000576862 COL17A1Q9UMD9 1497 aaPredicted RBP8.73□□□□□ -1.01
NUP88-213ENST00000576862 PRR33A8MZF0 331 aa8.73□□□□□ -1.01
NUP88-213ENST00000576862 ADAMTS4O75173 837 aa8.73□□□□□ -1.01
NUP88-213ENST00000576862 ARSHQ5FYA8 562 aa8.73□□□□□ -1.01
NUP88-213ENST00000576862 Q8N3U1 123 aa8.73□□□□□ -1.01
NUP88-213ENST00000576862 ZNRF3Q9ULT6 936 aa8.73□□□□□ -1.01
NUP88-213ENST00000576862 TPX2Q9ULW0 747 aaKnown RBP8.73□□□□□ -1.01
NUP88-213ENST00000576862 PPT2Q9UMR5 302 aa8.73□□□□□ -1.01
NUP88-213ENST00000576862 CEP131Q9UPN4 1083 aa8.73□□□□□ -1.01
NUP88-213ENST00000576862 MEIS3P2A8K0S8 358 aa8.72□□□□□ -1.01
NUP88-213ENST00000576862 CEACAM5P06731 702 aa8.72□□□□□ -1.01
NUP88-213ENST00000576862 CDCP2Q5VXM1 449 aa8.72□□□□□ -1.01
NUP88-213ENST00000576862 BAHD1Q8TBE0 780 aaPredicted RBP8.72□□□□□ -1.01
NUP88-213ENST00000576862 ATG4CQ96DT6 458 aa8.72□□□□□ -1.01
NUP88-213ENST00000576862 KIF2CQ99661 725 aa8.72□□□□□ -1.01
NUP88-213ENST00000576862 ZFP64Q9NPA5 681 aa8.72□□□□□ -1.01
NUP88-213ENST00000576862 PCMTD2Q9NV79 361 aa8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms