RNA–Protein interactions for RNA: ENST00000576241.1

CCDC40-216, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 714 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-216ENST00000576241 UBXN2AP68543 259 aa16.69■□□□□ 0.26
CCDC40-216ENST00000576241 AS3MTQ9HBK9 375 aa16.69■□□□□ 0.26
CCDC40-216ENST00000576241 DDX19BQ9UMR2 479 aa16.69■□□□□ 0.26
CCDC40-216ENST00000576241 HMMRO75330 724 aa16.68■□□□□ 0.26
CCDC40-216ENST00000576241 HLA-DOAP06340 250 aa16.68■□□□□ 0.26
CCDC40-216ENST00000576241 ASNSP08243 561 aa16.68■□□□□ 0.26
CCDC40-216ENST00000576241 HMGCS2P54868 508 aa16.68■□□□□ 0.26
CCDC40-216ENST00000576241 PRKCZQ05513 592 aa16.68■□□□□ 0.26
CCDC40-216ENST00000576241 MAP3K12Q12852 859 aa16.68■□□□□ 0.26
CCDC40-216ENST00000576241 PABPC4Q13310 644 aaKnown RBP eCLIP16.68■□□□□ 0.26
CCDC40-216ENST00000576241 TMED8Q6PL24 325 aaPredicted RBP16.68■□□□□ 0.26
CCDC40-216ENST00000576241 FOXP4Q8IVH2 680 aaPredicted RBP16.68■□□□□ 0.26
CCDC40-216ENST00000576241 SAP30BPQ9UHR5 308 aaKnown RBP16.68■□□□□ 0.26
CCDC40-216ENST00000576241 PALD1Q9ULE6 856 aa16.68■□□□□ 0.26
CCDC40-216ENST00000576241 TNPO2O14787 897 aaKnown RBP16.67■□□□□ 0.26
CCDC40-216ENST00000576241 DYNLL1P63167 89 aaKnown RBP16.67■□□□□ 0.26
CCDC40-216ENST00000576241 RRP1BQ14684 758 aaKnown RBP16.67■□□□□ 0.26
CCDC40-216ENST00000576241 TREML2Q5T2D2 321 aa16.67■□□□□ 0.26
CCDC40-216ENST00000576241 RPAP2Q8IXW5 612 aaPredicted RBP16.67■□□□□ 0.26
CCDC40-216ENST00000576241 MAGEB6Q8N7X4 407 aa16.67■□□□□ 0.26
CCDC40-216ENST00000576241 MIGA1Q8NAN2 632 aa16.67■□□□□ 0.26
CCDC40-216ENST00000576241 CHMP4BQ9H444 224 aaKnown RBP16.67■□□□□ 0.26
CCDC40-216ENST00000576241 IL1RAPL2Q9NP60 686 aa16.67■□□□□ 0.26
CCDC40-216ENST00000576241 ZMYND8Q9ULU4 1186 aaPredicted RBP16.67■□□□□ 0.26
CCDC40-216ENST00000576241 TFRCP02786 760 aaKnown RBP16.66■□□□□ 0.26
CCDC40-216ENST00000576241 USP5P45974 858 aa16.66■□□□□ 0.26
CCDC40-216ENST00000576241 CLASRPQ8N2M8 674 aaKnown RBP16.66■□□□□ 0.26
CCDC40-216ENST00000576241 ANKRD13CQ8N6S4 541 aa16.66■□□□□ 0.26
CCDC40-216ENST00000576241 SLAIN1Q8ND83 568 aa16.66■□□□□ 0.26
CCDC40-216ENST00000576241 RHPN1Q8TCX5 695 aa16.66■□□□□ 0.26
CCDC40-216ENST00000576241 COG6Q9Y2V7 657 aa16.66■□□□□ 0.26
CCDC40-216ENST00000576241 NDUFB9Q9Y6M9 179 aa16.66■□□□□ 0.26
CCDC40-216ENST00000576241 RPTORQ8N122 1335 aa16.66■□□□□ 0.26
CCDC40-216ENST00000576241 APBB1O00213 710 aa16.65■□□□□ 0.26
CCDC40-216ENST00000576241 GCLCP48506 637 aaPredicted RBP16.65■□□□□ 0.26
CCDC40-216ENST00000576241 TTF1Q15361 905 aaPredicted RBP16.65■□□□□ 0.26
CCDC40-216ENST00000576241 FAM110CQ1W6H9 321 aa16.65■□□□□ 0.26
CCDC40-216ENST00000576241 SH3D19Q5HYK7 790 aa16.65■□□□□ 0.26
CCDC40-216ENST00000576241 METTL16Q86W50 562 aaKnown RBP16.65■□□□□ 0.26
CCDC40-216ENST00000576241 C7orf61Q8IZ16 206 aa16.65■□□□□ 0.26
CCDC40-216ENST00000576241 TDHQ8IZJ6 230 aa16.65■□□□□ 0.26
CCDC40-216ENST00000576241 KIF1BPQ96EK5 621 aa16.65■□□□□ 0.26
CCDC40-216ENST00000576241 PAWRQ96IZ0 340 aaKnown RBP16.65■□□□□ 0.26
CCDC40-216ENST00000576241 WDR18Q9BV38 432 aa16.65■□□□□ 0.26
CCDC40-216ENST00000576241 ANTXR1Q9H6X2 564 aa16.65■□□□□ 0.26
CCDC40-216ENST00000576241 DNAJC18Q9H819 358 aa16.65■□□□□ 0.26
CCDC40-216ENST00000576241 GINM1Q9NU53 330 aa16.65■□□□□ 0.26
CCDC40-216ENST00000576241 TMOD4Q9NZQ9 345 aa16.65■□□□□ 0.26
CCDC40-216ENST00000576241 RCAN3Q9UKA8 241 aa16.65■□□□□ 0.26
CCDC40-216ENST00000576241 PHIPQ8WWQ0 1821 aa16.65■□□□□ 0.26
CCDC40-216ENST00000576241 IFIT2P09913 472 aaKnown RBP16.64■□□□□ 0.25
CCDC40-216ENST00000576241 MTMR2Q13614 643 aa16.64■□□□□ 0.25
CCDC40-216ENST00000576241 COA7Q96BR5 231 aa16.64■□□□□ 0.25
CCDC40-216ENST00000576241 ZBTB40Q9NUA8 1239 aa16.64■□□□□ 0.25
CCDC40-216ENST00000576241 GABRQQ9UN88 632 aa16.64■□□□□ 0.25
CCDC40-216ENST00000576241 PTPRFP10586 1907 aa16.63■□□□□ 0.25
CCDC40-216ENST00000576241 ADCY3O60266 1144 aa16.63■□□□□ 0.25
CCDC40-216ENST00000576241 GDF11O95390 407 aa16.63■□□□□ 0.25
CCDC40-216ENST00000576241 FLT3LGP49771 235 aa16.63■□□□□ 0.25
CCDC40-216ENST00000576241 BACE1P56817 501 aa16.63■□□□□ 0.25
CCDC40-216ENST00000576241 IRX3P78415 501 aaPredicted RBP16.63■□□□□ 0.25
CCDC40-216ENST00000576241 GUCD1Q96NT3 240 aa16.63■□□□□ 0.25
CCDC40-216ENST00000576241 DEFB118Q96PH6 123 aa16.63■□□□□ 0.25
CCDC40-216ENST00000576241 BCL11AQ9H165 835 aa16.63■□□□□ 0.25
CCDC40-216ENST00000576241 ASCC2Q9H1I8 757 aaPredicted RBP16.63■□□□□ 0.25
CCDC40-216ENST00000576241 ZBTB21Q9ULJ3 1066 aa16.63■□□□□ 0.25
CCDC40-216ENST00000576241 C19orf81C9J6K1 198 aa16.62■□□□□ 0.25
CCDC40-216ENST00000576241 RAB11FIP3O75154 756 aa16.62■□□□□ 0.25
CCDC40-216ENST00000576241 SYN1P17600 705 aa16.62■□□□□ 0.25
CCDC40-216ENST00000576241 COL9A1P20849 921 aa16.62■□□□□ 0.25
CCDC40-216ENST00000576241 MAGEA10P43363 369 aaPredicted RBP16.62■□□□□ 0.25
CCDC40-216ENST00000576241 IRF5Q13568 498 aa16.62■□□□□ 0.25
CCDC40-216ENST00000576241 TTC6Q86TZ1 520 aa16.62■□□□□ 0.25
CCDC40-216ENST00000576241 DIS3LQ8TF46 1054 aaKnown RBP16.62■□□□□ 0.25
CCDC40-216ENST00000576241 TAOK2Q9UL54 1235 aa16.62■□□□□ 0.25
CCDC40-216ENST00000576241 TTC28Q96AY4 2481 aa16.62■□□□□ 0.25
CCDC40-216ENST00000576241 LOC285556D6RIA3 1793 aa16.61■□□□□ 0.25
CCDC40-216ENST00000576241 MGAMO43451 1857 aa16.61■□□□□ 0.25
CCDC40-216ENST00000576241 MAGEB6P1A0A0J9YX57 407 aa16.61■□□□□ 0.25
CCDC40-216ENST00000576241 USP17L10C9JJH3 530 aa16.61■□□□□ 0.25
CCDC40-216ENST00000576241 JAG1P78504 1218 aa16.61■□□□□ 0.25
CCDC40-216ENST00000576241 SLC9C2Q5TAH2 1124 aa16.61■□□□□ 0.25
CCDC40-216ENST00000576241 NECAB2Q7Z6G3 386 aa16.61■□□□□ 0.25
CCDC40-216ENST00000576241 SIRT2Q8IXJ6 389 aa16.61■□□□□ 0.25
CCDC40-216ENST00000576241 PXYLP1Q8TE99 480 aa16.61■□□□□ 0.25
CCDC40-216ENST00000576241 DNAJC2Q99543 621 aaKnown RBP16.61■□□□□ 0.25
CCDC40-216ENST00000576241 EHD4Q9H223 541 aa16.61■□□□□ 0.25
CCDC40-216ENST00000576241 SERPINB13Q9UIV8 391 aa16.61■□□□□ 0.25
CCDC40-216ENST00000576241 SIPA1L1O43166 1804 aa16.61■□□□□ 0.25
CCDC40-216ENST00000576241 ATAD5Q96QE3 1844 aa16.61■□□□□ 0.25
CCDC40-216ENST00000576241 GOLIM4O00461 696 aa16.6■□□□□ 0.25
CCDC40-216ENST00000576241 GH2P01242 217 aa16.6■□□□□ 0.25
CCDC40-216ENST00000576241 INHAP05111 366 aa16.6■□□□□ 0.25
CCDC40-216ENST00000576241 ELNP15502 786 aa16.6■□□□□ 0.25
CCDC40-216ENST00000576241 SHROOM1Q2M3G4 852 aaPredicted RBP16.6■□□□□ 0.25
CCDC40-216ENST00000576241 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.6■□□□□ 0.25
CCDC40-216ENST00000576241 CRNKL1Q9BZJ0 848 aaKnown RBP16.6■□□□□ 0.25
CCDC40-216ENST00000576241 UBE2OQ9C0C9 1292 aaKnown RBP16.6■□□□□ 0.25
CCDC40-216ENST00000576241 EYSQ5T1H1 3165 aa16.6■□□□□ 0.25
CCDC40-216ENST00000576241 FOCADQ5VW36 1801 aa16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms