RNA–Protein interactions for RNA: ENST00000574428.5

ATPAF1-213, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

TSL 1 (best) BASIC

Gene ATPAF1, Length 1,760 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-213ENST00000574428 UBAC1Q9BSL1 405 aa28.3■■■□□ 2.12
ATPAF1-213ENST00000574428 TAF1DQ9H5J8 278 aaPredicted RBP28.3■■■□□ 2.12
ATPAF1-213ENST00000574428 TPCN1Q9ULQ1 816 aa28.3■■■□□ 2.12
ATPAF1-213ENST00000574428 LIMCH1Q9UPQ0 1083 aa28.3■■■□□ 2.12
ATPAF1-213ENST00000574428 METTL16Q86W50 562 aaKnown RBP28.29■■■□□ 2.12
ATPAF1-213ENST00000574428 IGDCC4Q8TDY8 1250 aa28.29■■■□□ 2.12
ATPAF1-213ENST00000574428 MYH8P13535 1937 aa28.29■■■□□ 2.12
ATPAF1-213ENST00000574428 NMT2O60551 498 aa28.29■■■□□ 2.12
ATPAF1-213ENST00000574428 TSPY3P0CV98 308 aa28.29■■■□□ 2.12
ATPAF1-213ENST00000574428 TSPY8P0CW00 308 aa28.29■■■□□ 2.12
ATPAF1-213ENST00000574428 APOBRQ0VD83 1088 aa28.29■■■□□ 2.12
ATPAF1-213ENST00000574428 FBXL16Q8N461 479 aa28.29■■■□□ 2.12
ATPAF1-213ENST00000574428 TMX3Q96JJ7 454 aa28.29■■■□□ 2.12
ATPAF1-213ENST00000574428 ZSCAN10Q96SZ4 725 aaPredicted RBP28.29■■■□□ 2.12
ATPAF1-213ENST00000574428 SENP2Q9HC62 589 aa28.29■■■□□ 2.12
ATPAF1-213ENST00000574428 ANGEL1Q9UNK9 670 aaKnown RBP28.29■■■□□ 2.12
ATPAF1-213ENST00000574428 SART3Q15020 963 aaKnown RBP28.28■■■□□ 2.12
ATPAF1-213ENST00000574428 IQCA1Q86XH1 822 aa28.28■■■□□ 2.12
ATPAF1-213ENST00000574428 LY9Q9HBG7 655 aa28.28■■■□□ 2.12
ATPAF1-213ENST00000574428 TNKSO95271 1327 aa28.28■■■□□ 2.12
ATPAF1-213ENST00000574428 PITPNM2Q9BZ72 1349 aa28.28■■■□□ 2.12
ATPAF1-213ENST00000574428 LARGE1O95461 756 aa28.27■■■□□ 2.12
ATPAF1-213ENST00000574428 XPO5Q9HAV4 1204 aaKnown RBP eCLIP28.27■■■□□ 2.12
ATPAF1-213ENST00000574428 DAXXQ9UER7 740 aaPredicted RBP28.27■■■□□ 2.12
ATPAF1-213ENST00000574428 HERC5Q9UII4 1024 aaKnown RBP28.27■■■□□ 2.12
ATPAF1-213ENST00000574428 NT5C2P49902 561 aa28.27■■■□□ 2.12
ATPAF1-213ENST00000574428 EAPPQ56P03 285 aaPredicted RBP28.27■■■□□ 2.12
ATPAF1-213ENST00000574428 ERICH2A1L162 156 aa28.26■■■□□ 2.11
ATPAF1-213ENST00000574428 AKR1B1P15121 316 aa28.26■■■□□ 2.11
ATPAF1-213ENST00000574428 PRAMEF18Q5VWM3 479 aa28.26■■■□□ 2.11
ATPAF1-213ENST00000574428 MIGA2Q7L4E1 593 aa28.26■■■□□ 2.11
ATPAF1-213ENST00000574428 ENAHQ8N8S7 591 aaPredicted RBP28.26■■■□□ 2.11
ATPAF1-213ENST00000574428 WTAPQ15007 396 aa28.25■■■□□ 2.11
ATPAF1-213ENST00000574428 SEC23AQ15436 765 aa28.25■■■□□ 2.11
ATPAF1-213ENST00000574428 ME3Q16798 604 aa28.25■■■□□ 2.11
ATPAF1-213ENST00000574428 TATDN1Q6P1N9 297 aa28.25■■■□□ 2.11
ATPAF1-213ENST00000574428 DCPSQ96C86 337 aaKnown RBP28.25■■■□□ 2.11
ATPAF1-213ENST00000574428 MTA3Q9BTC8 594 aa28.25■■■□□ 2.11
ATPAF1-213ENST00000574428 IL17RBQ9NRM6 502 aa28.25■■■□□ 2.11
ATPAF1-213ENST00000574428 TAOK2Q9UL54 1235 aa28.25■■■□□ 2.11
ATPAF1-213ENST00000574428 NEDD1Q8NHV4 660 aa28.24■■■□□ 2.11
ATPAF1-213ENST00000574428 BRPF3Q9ULD4 1205 aa28.24■■■□□ 2.11
ATPAF1-213ENST00000574428 NAP1L2Q9ULW6 460 aaPredicted RBP28.24■■■□□ 2.11
ATPAF1-213ENST00000574428 CERKLQ49MI3 558 aaPredicted RBP28.24■■■□□ 2.11
ATPAF1-213ENST00000574428 NBPF12Q5TAG4 269 aaPredicted RBP28.24■■■□□ 2.11
ATPAF1-213ENST00000574428 NFXL1Q6ZNB6 911 aa28.24■■■□□ 2.11
ATPAF1-213ENST00000574428 SPRYD3Q8NCJ5 442 aa28.24■■■□□ 2.11
ATPAF1-213ENST00000574428 KLF18A0A0U1RQI7 1052 aa28.23■■■□□ 2.11
ATPAF1-213ENST00000574428 LIFRP42702 1097 aa28.23■■■□□ 2.11
ATPAF1-213ENST00000574428 SHROOM1Q2M3G4 852 aaPredicted RBP28.23■■■□□ 2.11
ATPAF1-213ENST00000574428 ZSCAN31Q96LW9 406 aaPredicted RBP28.23■■■□□ 2.11
ATPAF1-213ENST00000574428 GNL3Q9BVP2 549 aaKnown RBP eCLIP28.23■■■□□ 2.11
ATPAF1-213ENST00000574428 PPP2R3BQ9Y5P8 575 aa28.23■■■□□ 2.11
ATPAF1-213ENST00000574428 MPHOSPH10O00566 681 aaKnown RBP28.22■■■□□ 2.11
ATPAF1-213ENST00000574428 STK3Q13188 491 aa28.22■■■□□ 2.11
ATPAF1-213ENST00000574428 RRAGCQ9HB90 399 aa28.22■■■□□ 2.11
ATPAF1-213ENST00000574428 POLR2AP24928 1970 aaKnown RBP28.22■■■□□ 2.11
ATPAF1-213ENST00000574428 PLIN4Q96Q06 1357 aa28.22■■■□□ 2.11
ATPAF1-213ENST00000574428 ADM5C9JUS6 153 aa28.22■■■□□ 2.11
ATPAF1-213ENST00000574428 TBC1D12O60347 775 aa28.22■■■□□ 2.11
ATPAF1-213ENST00000574428 GDF11O95390 407 aa28.22■■■□□ 2.11
ATPAF1-213ENST00000574428 RRP1BQ14684 758 aaKnown RBP28.22■■■□□ 2.11
ATPAF1-213ENST00000574428 DLK2Q6UY11 383 aa28.22■■■□□ 2.11
ATPAF1-213ENST00000574428 PNMA8AQ86V59 439 aaPredicted RBP28.22■■■□□ 2.11
ATPAF1-213ENST00000574428 SGMS1Q86VZ5 419 aa28.22■■■□□ 2.11
ATPAF1-213ENST00000574428 SULF1Q8IWU6 871 aa28.22■■■□□ 2.11
ATPAF1-213ENST00000574428 NECAB1Q8N987 351 aa28.22■■■□□ 2.11
ATPAF1-213ENST00000574428 ZC3H15Q8WU90 426 aaKnown RBP28.22■■■□□ 2.11
ATPAF1-213ENST00000574428 TCP11L1Q9NUJ3 509 aa28.22■■■□□ 2.11
ATPAF1-213ENST00000574428 EVCP57679 992 aa28.21■■■□□ 2.11
ATPAF1-213ENST00000574428 IFIT1BQ5T764 474 aaKnown RBP28.21■■■□□ 2.11
ATPAF1-213ENST00000574428 RAB11FIP4Q86YS3 637 aa28.21■■■□□ 2.11
ATPAF1-213ENST00000574428 ZNF526Q8TF50 670 aaPredicted RBP28.21■■■□□ 2.11
ATPAF1-213ENST00000574428 CCDC17Q96LX7 622 aa28.21■■■□□ 2.11
ATPAF1-213ENST00000574428 SH2B1Q9NRF2 756 aaPredicted RBP28.21■■■□□ 2.11
ATPAF1-213ENST00000574428 FOXD4L1Q9NU39 408 aa28.21■■■□□ 2.11
ATPAF1-213ENST00000574428 CCDC69A6NI79 296 aa28.2■■■□□ 2.11
ATPAF1-213ENST00000574428 GOLGA8BA8MQT2 603 aa28.2■■■□□ 2.11
ATPAF1-213ENST00000574428 RCSD1Q6JBY9 416 aa28.2■■■□□ 2.11
ATPAF1-213ENST00000574428 KRT26Q7Z3Y9 468 aa28.2■■■□□ 2.11
ATPAF1-213ENST00000574428 CEP95Q96GE4 821 aa28.2■■■□□ 2.11
ATPAF1-213ENST00000574428 PDIA3P30101 505 aaKnown RBP28.19■■■□□ 2.1
ATPAF1-213ENST00000574428 MAP3K10Q02779 954 aa28.19■■■□□ 2.1
ATPAF1-213ENST00000574428 HSP90AA1P07900 732 aaKnown RBP28.19■■■□□ 2.1
ATPAF1-213ENST00000574428 POTEIP0CG38 1075 aa28.19■■■□□ 2.1
ATPAF1-213ENST00000574428 POTEJP0CG39 1038 aa28.19■■■□□ 2.1
ATPAF1-213ENST00000574428 VEGFAP15692 232 aaPredicted RBP28.19■■■□□ 2.1
ATPAF1-213ENST00000574428 ST3GAL1Q11201 340 aa28.19■■■□□ 2.1
ATPAF1-213ENST00000574428 APOA5Q6Q788 366 aa28.19■■■□□ 2.1
ATPAF1-213ENST00000574428 CLEC10AQ8IUN9 316 aa28.19■■■□□ 2.1
ATPAF1-213ENST00000574428 TMTC2Q8N394 836 aa28.19■■■□□ 2.1
ATPAF1-213ENST00000574428 ZNF274Q96GC6 653 aaPredicted RBP28.19■■■□□ 2.1
ATPAF1-213ENST00000574428 STX8Q9UNK0 236 aa28.19■■■□□ 2.1
ATPAF1-213ENST00000574428 GREB1LQ9C091 1923 aaPredicted RBP28.18■■■□□ 2.1
ATPAF1-213ENST00000574428 IGKV6D-41A0A0C4DH26 115 aa28.18■■■□□ 2.1
ATPAF1-213ENST00000574428 JAG1P78504 1218 aa28.18■■■□□ 2.1
ATPAF1-213ENST00000574428 ABCB5Q2M3G0 1257 aa28.18■■■□□ 2.1
ATPAF1-213ENST00000574428 CCDC83Q8IWF9 413 aa28.18■■■□□ 2.1
ATPAF1-213ENST00000574428 MYL10Q9BUA6 226 aa28.18■■■□□ 2.1
ATPAF1-213ENST00000574428 SLC12A7Q9Y666 1083 aa28.18■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms