RNA–Protein interactions for RNA: ENST00000572665.1

CIITA-208, Transcript of class II major histocompatibility complex transactivator, human

TSL 5

Gene CIITA, Length 560 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CIITA-208	ENST00000572665	ZNF541	Q9H0D2	1346 aa		11.98	□□□□□ -0.49
CIITA-208	ENST00000572665	BBOX1	O75936	387 aa		11.98	□□□□□ -0.49
CIITA-208	ENST00000572665	FAM13A	O94988	1023 aa		11.98	□□□□□ -0.49
CIITA-208	ENST00000572665	HSPA1A	P0DMV8	641 aa	Known RBP	11.98	□□□□□ -0.49
CIITA-208	ENST00000572665	HSPA1B	P0DMV9	641 aa	Known RBP	11.98	□□□□□ -0.49
CIITA-208	ENST00000572665	MPST	P25325	297 aa		11.98	□□□□□ -0.49
CIITA-208	ENST00000572665	ARHGAP4	P98171	946 aa		11.98	□□□□□ -0.49
CIITA-208	ENST00000572665	CALD1	Q05682	793 aa	Known RBP	11.98	□□□□□ -0.49
CIITA-208	ENST00000572665	DDX10	Q13206	875 aa	Known RBP	11.98	□□□□□ -0.49
CIITA-208	ENST00000572665	CHMP4A	Q9BY43	222 aa		11.98	□□□□□ -0.49
CIITA-208	ENST00000572665	DDX21	Q9NR30	783 aa	Known RBP eCLIP	11.98	□□□□□ -0.49
CIITA-208	ENST00000572665	PASK	Q96RG2	1323 aa		11.97	□□□□□ -0.49
CIITA-208	ENST00000572665	CHL1	O00533	1208 aa		11.97	□□□□□ -0.49
CIITA-208	ENST00000572665	ATP4A	P20648	1035 aa		11.97	□□□□□ -0.49
CIITA-208	ENST00000572665	AIMP1	Q12904	312 aa	Known RBP	11.97	□□□□□ -0.49
CIITA-208	ENST00000572665	DGKZ	Q13574	1117 aa		11.97	□□□□□ -0.49
CIITA-208	ENST00000572665	OLFM4	Q6UX06	510 aa		11.97	□□□□□ -0.49
CIITA-208	ENST00000572665	DDX46	Q7L014	1031 aa	Known RBP	11.97	□□□□□ -0.49
CIITA-208	ENST00000572665	COPS6	Q7L5N1	327 aa		11.97	□□□□□ -0.49
CIITA-208	ENST00000572665	TMC4	Q7Z404	712 aa		11.97	□□□□□ -0.49
CIITA-208	ENST00000572665	TIMMDC1	Q9NPL8	285 aa		11.97	□□□□□ -0.49
CIITA-208	ENST00000572665	ATP6V0A2	Q9Y487	856 aa		11.97	□□□□□ -0.49
CIITA-208	ENST00000572665	LAS1L	Q9Y4W2	734 aa	Known RBP	11.97	□□□□□ -0.49
CIITA-208	ENST00000572665	GJA3	Q9Y6H8	435 aa		11.97	□□□□□ -0.49
CIITA-208	ENST00000572665	SH3TC1	Q8TE82	1336 aa		11.96	□□□□□ -0.49
CIITA-208	ENST00000572665	PPIP5K2	O43314	1243 aa		11.96	□□□□□ -0.49
CIITA-208	ENST00000572665	HSP90B1	P14625	803 aa	Known RBP	11.96	□□□□□ -0.49
CIITA-208	ENST00000572665	TCIRG1	Q13488	830 aa		11.96	□□□□□ -0.49
CIITA-208	ENST00000572665	ZNF800	Q2TB10	664 aa	Predicted RBP eCLIP	11.96	□□□□□ -0.49
CIITA-208	ENST00000572665	C11orf91	Q3C1V1	193 aa		11.96	□□□□□ -0.49
CIITA-208	ENST00000572665	CCDC146	Q8IYE0	955 aa		11.96	□□□□□ -0.49
CIITA-208	ENST00000572665	CNTROB	Q8N137	903 aa		11.96	□□□□□ -0.49
CIITA-208	ENST00000572665	RHPN1	Q8TCX5	695 aa		11.96	□□□□□ -0.49
CIITA-208	ENST00000572665	XAGE3	Q8WTP9	111 aa		11.96	□□□□□ -0.49
CIITA-208	ENST00000572665	KLK14	Q9P0G3	267 aa		11.96	□□□□□ -0.49
CIITA-208	ENST00000572665	DBF4	Q9UBU7	674 aa	Predicted RBP	11.96	□□□□□ -0.49
CIITA-208	ENST00000572665	TRMT112	Q9UI30	125 aa	Known RBP	11.96	□□□□□ -0.49
CIITA-208	ENST00000572665	SNED1	Q8TER0	1413 aa		11.95	□□□□□ -0.5
CIITA-208	ENST00000572665	ADAMTSL1	Q8N6G6	1762 aa		11.95	□□□□□ -0.5
CIITA-208	ENST00000572665	CNTNAP1	P78357	1384 aa		11.95	□□□□□ -0.5
CIITA-208	ENST00000572665		A0A1B0GTH6	734 aa		11.95	□□□□□ -0.5
CIITA-208	ENST00000572665	BRD2	P25440	801 aa	Known RBP	11.95	□□□□□ -0.5
CIITA-208	ENST00000572665	FAM26D	Q5JW98	314 aa		11.95	□□□□□ -0.5
CIITA-208	ENST00000572665	DPP8	Q6V1X1	898 aa	Predicted RBP	11.95	□□□□□ -0.5
CIITA-208	ENST00000572665	USP50	Q70EL3	339 aa	Predicted RBP	11.95	□□□□□ -0.5
CIITA-208	ENST00000572665	LRP10	Q7Z4F1	713 aa		11.95	□□□□□ -0.5
CIITA-208	ENST00000572665	NLRP10	Q86W26	655 aa		11.95	□□□□□ -0.5
CIITA-208	ENST00000572665	SP8	Q8IXZ3	490 aa		11.95	□□□□□ -0.5
CIITA-208	ENST00000572665	HYPK	Q9NX55	129 aa		11.95	□□□□□ -0.5
CIITA-208	ENST00000572665	GPC6	Q9Y625	555 aa	Predicted RBP	11.95	□□□□□ -0.5
CIITA-208	ENST00000572665	LAMB2	P55268	1798 aa		11.95	□□□□□ -0.5
CIITA-208	ENST00000572665	ABCC4	O15439	1325 aa		11.94	□□□□□ -0.5
CIITA-208	ENST00000572665	TCERG1	O14776	1098 aa	Known RBP	11.94	□□□□□ -0.5
CIITA-208	ENST00000572665	MAN1A2	O60476	641 aa		11.94	□□□□□ -0.5
CIITA-208	ENST00000572665	COL13A1	Q5TAT6	717 aa	Predicted RBP	11.94	□□□□□ -0.5
CIITA-208	ENST00000572665	RGS22	Q8NE09	1264 aa		11.94	□□□□□ -0.5
CIITA-208	ENST00000572665	PLBD2	Q8NHP8	589 aa		11.94	□□□□□ -0.5
CIITA-208	ENST00000572665	CDHR2	Q9BYE9	1310 aa		11.93	□□□□□ -0.5
CIITA-208	ENST00000572665	ANXA1	P04083	346 aa		11.93	□□□□□ -0.5
CIITA-208	ENST00000572665	MSX1	P28360	303 aa		11.93	□□□□□ -0.5
CIITA-208	ENST00000572665	MARS	P56192	900 aa	Known RBP	11.93	□□□□□ -0.5
CIITA-208	ENST00000572665	GRAP	Q13588	217 aa		11.93	□□□□□ -0.5
CIITA-208	ENST00000572665	TNIP1	Q15025	636 aa		11.93	□□□□□ -0.5
CIITA-208	ENST00000572665	PROSER3	Q2NL68	480 aa		11.93	□□□□□ -0.5
CIITA-208	ENST00000572665	GRAPL	Q8TC17	118 aa	Predicted RBP	11.93	□□□□□ -0.5
CIITA-208	ENST00000572665	IFT43	Q96FT9	208 aa		11.93	□□□□□ -0.5
CIITA-208	ENST00000572665	RTFDC1	Q9BY42	306 aa	Predicted RBP	11.93	□□□□□ -0.5
CIITA-208	ENST00000572665	CHPF2	Q9P2E5	772 aa		11.93	□□□□□ -0.5
CIITA-208	ENST00000572665	ZNRF3	Q9ULT6	936 aa		11.93	□□□□□ -0.5
CIITA-208	ENST00000572665	TRPM7	Q96QT4	1865 aa		11.92	□□□□□ -0.5
CIITA-208	ENST00000572665	EIF1AX	P47813	144 aa	Known RBP	11.92	□□□□□ -0.5
CIITA-208	ENST00000572665	AOC3	Q16853	763 aa		11.92	□□□□□ -0.5
CIITA-208	ENST00000572665	DEFB115	Q30KQ5	88 aa		11.92	□□□□□ -0.5
CIITA-208	ENST00000572665	NOM1	Q5C9Z4	860 aa	Known RBP	11.92	□□□□□ -0.5
CIITA-208	ENST00000572665	MAP1S	Q66K74	1059 aa	Predicted RBP	11.92	□□□□□ -0.5
CIITA-208	ENST00000572665	ETFBKMT	Q8IXQ9	262 aa		11.92	□□□□□ -0.5
CIITA-208	ENST00000572665	ADARB2	Q9NS39	739 aa	Known RBP	11.92	□□□□□ -0.5
CIITA-208	ENST00000572665	ABT1	Q9ULW3	272 aa	Known RBP	11.92	□□□□□ -0.5
CIITA-208	ENST00000572665	ADAMTS8	Q9UP79	889 aa		11.92	□□□□□ -0.5
CIITA-208	ENST00000572665	DYRK1B	Q9Y463	629 aa		11.92	□□□□□ -0.5
CIITA-208	ENST00000572665	RASSF10	A6NK89	507 aa		11.91	□□□□□ -0.5
CIITA-208	ENST00000572665	HCLS1	P14317	486 aa	Predicted RBP	11.91	□□□□□ -0.5
CIITA-208	ENST00000572665	ECE1	P42892	770 aa		11.91	□□□□□ -0.5
CIITA-208	ENST00000572665	GNAI1	P63096	354 aa		11.91	□□□□□ -0.5
CIITA-208	ENST00000572665	MAP2K1	Q02750	393 aa	Predicted RBP	11.91	□□□□□ -0.5
CIITA-208	ENST00000572665	HIF1A	Q16665	826 aa		11.91	□□□□□ -0.5
CIITA-208	ENST00000572665	ALKBH2	Q6NS38	261 aa		11.91	□□□□□ -0.5
CIITA-208	ENST00000572665	ZIC5	Q96T25	663 aa		11.91	□□□□□ -0.5
CIITA-208	ENST00000572665	BCL2L13	Q9BXK5	485 aa		11.91	□□□□□ -0.5
CIITA-208	ENST00000572665	SOBP	A7XYQ1	873 aa		11.9	□□□□□ -0.5
CIITA-208	ENST00000572665	ZBTB39	O15060	712 aa		11.9	□□□□□ -0.5
CIITA-208	ENST00000572665	CTCF	P49711	727 aa	Predicted RBP	11.9	□□□□□ -0.5
CIITA-208	ENST00000572665	KIAA2012	Q0VF49	1180 aa		11.9	□□□□□ -0.5
CIITA-208	ENST00000572665	DUSP27	Q5VZP5	1158 aa		11.9	□□□□□ -0.5
CIITA-208	ENST00000572665	CIAPIN1	Q6FI81	312 aa		11.9	□□□□□ -0.5
CIITA-208	ENST00000572665	SUSD3	Q96L08	255 aa		11.9	□□□□□ -0.5
CIITA-208	ENST00000572665	EYA3	Q99504	573 aa		11.9	□□□□□ -0.5
CIITA-208	ENST00000572665	PRKRIP1	Q9H875	184 aa	Predicted RBP	11.9	□□□□□ -0.5
CIITA-208	ENST00000572665	SENP2	Q9HC62	589 aa		11.9	□□□□□ -0.5
CIITA-208	ENST00000572665	PRDM10	Q9NQV6	1147 aa		11.9	□□□□□ -0.5

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