RNA–Protein interactions for RNA: ENST00000570023.1

VPS39-212, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 337 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-212ENST00000570023 SUGP2Q8IX01 1082 aaKnown RBP eCLIP5.27□□□□□ -1.57
VPS39-212ENST00000570023 FBXL6Q8N531 539 aa5.27□□□□□ -1.57
VPS39-212ENST00000570023 PSMG3-AS1Q96PY0 264 aa5.27□□□□□ -1.57
VPS39-212ENST00000570023 RSRP1Q9BUV0 290 aa5.27□□□□□ -1.57
VPS39-212ENST00000570023 CCDC94Q9BW85 323 aaPredicted RBP5.27□□□□□ -1.57
VPS39-212ENST00000570023 ZFP64Q9NPA5 681 aa5.27□□□□□ -1.57
VPS39-212ENST00000570023 BSDC1Q9NW68 430 aaPredicted RBP5.27□□□□□ -1.57
VPS39-212ENST00000570023 RAI14Q9P0K7 980 aa5.27□□□□□ -1.57
VPS39-212ENST00000570023 PIM2Q9P1W9 311 aa5.27□□□□□ -1.57
VPS39-212ENST00000570023 PCDHB5Q9Y5E4 795 aa5.27□□□□□ -1.57
VPS39-212ENST00000570023 TACC3Q9Y6A5 838 aa5.27□□□□□ -1.57
VPS39-212ENST00000570023 SNCAIPQ9Y6H5 919 aa5.27□□□□□ -1.57
VPS39-212ENST00000570023 SCO2A0A1W2PP80 73 aa5.26□□□□□ -1.57
VPS39-212ENST00000570023 FAM170BA6NMN3 283 aa5.26□□□□□ -1.57
VPS39-212ENST00000570023 DCDC2CA8MYV0 355 aa5.26□□□□□ -1.57
VPS39-212ENST00000570023 GFRA2O00451 464 aa5.26□□□□□ -1.57
VPS39-212ENST00000570023 DYNC1I1O14576 645 aa5.26□□□□□ -1.57
VPS39-212ENST00000570023 RNGTTO60942 597 aaKnown RBP5.26□□□□□ -1.57
VPS39-212ENST00000570023 MED26O95402 600 aa5.26□□□□□ -1.57
VPS39-212ENST00000570023 FOSL1P15407 271 aa5.26□□□□□ -1.57
VPS39-212ENST00000570023 GRIK1P39086 918 aa5.26□□□□□ -1.57
VPS39-212ENST00000570023 SSR1P43307 286 aaKnown RBP5.26□□□□□ -1.57
VPS39-212ENST00000570023 MAP3K11Q16584 847 aa5.26□□□□□ -1.57
VPS39-212ENST00000570023 LDLRAD1Q5T700 205 aa5.26□□□□□ -1.57
VPS39-212ENST00000570023 PDZRN4Q6ZMN7 1036 aaPredicted RBP5.26□□□□□ -1.57
VPS39-212ENST00000570023 PLPPR2Q96GM1 343 aa5.26□□□□□ -1.57
VPS39-212ENST00000570023 OSBPL1AQ9BXW6 950 aa5.26□□□□□ -1.57
VPS39-212ENST00000570023 MIR1-1HGQ9H1L0 117 aa5.26□□□□□ -1.57
VPS39-212ENST00000570023 TLR6Q9Y2C9 796 aa5.26□□□□□ -1.57
VPS39-212ENST00000570023 LEMD3Q9Y2U8 911 aa5.26□□□□□ -1.57
VPS39-212ENST00000570023 CSADQ9Y600 493 aa5.26□□□□□ -1.57
VPS39-212ENST00000570023 LMNB1P20700 586 aa5.25□□□□□ -1.57
VPS39-212ENST00000570023 SATB1Q01826 763 aa5.25□□□□□ -1.57
VPS39-212ENST00000570023 LMNB2Q03252 620 aa5.25□□□□□ -1.57
VPS39-212ENST00000570023 PWP1Q13610 501 aa5.25□□□□□ -1.57
VPS39-212ENST00000570023 SEPT6Q14141 434 aa5.25□□□□□ -1.57
VPS39-212ENST00000570023 TSNAXIP1Q2TAA8 658 aa5.25□□□□□ -1.57
VPS39-212ENST00000570023 DUSP27Q5VZP5 1158 aa5.25□□□□□ -1.57
VPS39-212ENST00000570023 ZNF765Q7L2R6 523 aa5.25□□□□□ -1.57
VPS39-212ENST00000570023 ERMP1Q7Z2K6 904 aa5.25□□□□□ -1.57
VPS39-212ENST00000570023 DTX1Q86Y01 620 aa5.25□□□□□ -1.57
VPS39-212ENST00000570023 PHF6Q8IWS0 365 aaKnown RBP eCLIP5.25□□□□□ -1.57
VPS39-212ENST00000570023 KCT2Q8NC54 265 aa5.25□□□□□ -1.57
VPS39-212ENST00000570023 ELMO3Q96BJ8 720 aa5.25□□□□□ -1.57
VPS39-212ENST00000570023 RHOVQ96L33 236 aa5.25□□□□□ -1.57
VPS39-212ENST00000570023 TMEM74Q96NL1 305 aa5.25□□□□□ -1.57
VPS39-212ENST00000570023 LGR6Q9HBX8 967 aa5.25□□□□□ -1.57
VPS39-212ENST00000570023 SH3BP1Q9Y3L3 701 aa5.25□□□□□ -1.57
VPS39-212ENST00000570023 PLEKHD1A6NEE1 506 aa5.24□□□□□ -1.57
VPS39-212ENST00000570023 OFD1O75665 1012 aa5.24□□□□□ -1.57
VPS39-212ENST00000570023 SPINK2P20155 84 aa5.24□□□□□ -1.57
VPS39-212ENST00000570023 SSTR4P31391 388 aa5.24□□□□□ -1.57
VPS39-212ENST00000570023 CAP2P40123 477 aa5.24□□□□□ -1.57
VPS39-212ENST00000570023 CDK8P49336 464 aa5.24□□□□□ -1.57
VPS39-212ENST00000570023 CDK5R2Q13319 367 aa5.24□□□□□ -1.57
VPS39-212ENST00000570023 CAMK2GQ13555 558 aaPredicted RBP5.24□□□□□ -1.57
VPS39-212ENST00000570023 CYP27C1Q4G0S4 372 aa5.24□□□□□ -1.57
VPS39-212ENST00000570023 WIPI1Q5MNZ9 446 aaPredicted RBP5.24□□□□□ -1.57
VPS39-212ENST00000570023 CTR9Q6PD62 1173 aa5.24□□□□□ -1.57
VPS39-212ENST00000570023 ZNF507Q8TCN5 953 aa5.24□□□□□ -1.57
VPS39-212ENST00000570023 WNT10AQ9GZT5 417 aa5.24□□□□□ -1.57
VPS39-212ENST00000570023 SSU72Q9NP77 194 aaKnown RBP5.24□□□□□ -1.57
VPS39-212ENST00000570023 PCMTD2Q9NV79 361 aa5.24□□□□□ -1.57
VPS39-212ENST00000570023 TERF2IPQ9NYB0 399 aa5.24□□□□□ -1.57
VPS39-212ENST00000570023 ZCCHC6Q5VYS8 1495 aaKnown RBP5.24□□□□□ -1.57
VPS39-212ENST00000570023 CCDC66A2RUB6 948 aa5.23□□□□□ -1.57
VPS39-212ENST00000570023 FAM221AA4D161 298 aa5.23□□□□□ -1.57
VPS39-212ENST00000570023 CYP26A1O43174 497 aa5.23□□□□□ -1.57
VPS39-212ENST00000570023 CILPO75339 1184 aa5.23□□□□□ -1.57
VPS39-212ENST00000570023 CALRP27797 417 aaKnown RBP5.23□□□□□ -1.57
VPS39-212ENST00000570023 HOXA10P31260 410 aaPredicted RBP5.23□□□□□ -1.57
VPS39-212ENST00000570023 MAP2K1Q02750 393 aaPredicted RBP5.23□□□□□ -1.57
VPS39-212ENST00000570023 RPL6Q02878 288 aaKnown RBP5.23□□□□□ -1.57
VPS39-212ENST00000570023 LMOD3Q0VAK6 560 aa5.23□□□□□ -1.57
VPS39-212ENST00000570023 ZKSCAN8Q15776 578 aaPredicted RBP5.23□□□□□ -1.57
VPS39-212ENST00000570023 MSMPQ1L6U9 139 aa5.23□□□□□ -1.57
VPS39-212ENST00000570023 UBE3DQ7Z6J8 389 aa5.23□□□□□ -1.57
VPS39-212ENST00000570023 RELL1Q8IUW5 271 aa5.23□□□□□ -1.57
VPS39-212ENST00000570023 OTUD6BQ8N6M0 293 aa5.23□□□□□ -1.57
VPS39-212ENST00000570023 DUSP23Q9BVJ7 150 aa5.23□□□□□ -1.57
VPS39-212ENST00000570023 KCNQ5Q9NR82 932 aa5.23□□□□□ -1.57
VPS39-212ENST00000570023 PICK1Q9NRD5 415 aa5.23□□□□□ -1.57
VPS39-212ENST00000570023 NCAPD3P42695 1498 aa5.23□□□□□ -1.57
VPS39-212ENST00000570023 FSD2A1L4K1 749 aa5.22□□□□□ -1.57
VPS39-212ENST00000570023 NRDCO43847 1150 aa5.22□□□□□ -1.57
VPS39-212ENST00000570023 PF4P02776 101 aa5.22□□□□□ -1.57
VPS39-212ENST00000570023 PRNPP04156 253 aa5.22□□□□□ -1.57
VPS39-212ENST00000570023 FAM87AP0C7U9 286 aa5.22□□□□□ -1.57
VPS39-212ENST00000570023 VAMP1P23763 118 aa5.22□□□□□ -1.57
VPS39-212ENST00000570023 GBP2P32456 591 aaPredicted RBP5.22□□□□□ -1.57
VPS39-212ENST00000570023 MRE11P49959 708 aa5.22□□□□□ -1.57
VPS39-212ENST00000570023 RIPK4P57078 832 aa5.22□□□□□ -1.57
VPS39-212ENST00000570023 SLBPQ14493 270 aaKnown RBP eCLIP5.22□□□□□ -1.57
VPS39-212ENST00000570023 HSP90AB4PQ58FF6 505 aa5.22□□□□□ -1.57
VPS39-212ENST00000570023 XP32Q5T750 250 aa5.22□□□□□ -1.57
VPS39-212ENST00000570023 CDC37L1Q7L3B6 337 aa5.22□□□□□ -1.57
VPS39-212ENST00000570023 FAM214BQ7L5A3 538 aa5.22□□□□□ -1.57
VPS39-212ENST00000570023 ABCF1Q8NE71 845 aaKnown RBP eCLIP5.22□□□□□ -1.57
VPS39-212ENST00000570023 GATAD2BQ8WXI9 593 aa5.22□□□□□ -1.57
VPS39-212ENST00000570023 WRNQ14191 1432 aaPredicted RBP eCLIP5.22□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms