RNA–Protein interactions for RNA: ENST00000569916.1

CNOT1-220, Transcript of CCR4-NOT transcription complex subunit 1, humanhuman

TSL 3

Gene CNOT1, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT1-220ENST00000569916 MCM9Q9NXL9 1143 aa15.72■□□□□ 0.11
CNOT1-220ENST00000569916 ZBTB21Q9ULJ3 1066 aa15.72■□□□□ 0.11
CNOT1-220ENST00000569916 IGHDP01880 384 aa15.71■□□□□ 0.11
CNOT1-220ENST00000569916 POLR3DP05423 398 aaPredicted RBP15.71■□□□□ 0.11
CNOT1-220ENST00000569916 GABPAQ06546 454 aa15.71■□□□□ 0.11
CNOT1-220ENST00000569916 SPP2Q13103 211 aa15.71■□□□□ 0.11
CNOT1-220ENST00000569916 OTOP1Q7RTM1 612 aa15.71■□□□□ 0.11
CNOT1-220ENST00000569916 RWDD1Q9H446 243 aaPredicted RBP15.71■□□□□ 0.11
CNOT1-220ENST00000569916 AS3MTQ9HBK9 375 aa15.71■□□□□ 0.11
CNOT1-220ENST00000569916 GINM1Q9NU53 330 aa15.71■□□□□ 0.11
CNOT1-220ENST00000569916 ZBTB47Q9UFB7 747 aaPredicted RBP15.71■□□□□ 0.11
CNOT1-220ENST00000569916 SLC45A1Q9Y2W3 748 aa15.71■□□□□ 0.11
CNOT1-220ENST00000569916 RNF113AO15541 343 aaKnown RBP15.7■□□□□ 0.1
CNOT1-220ENST00000569916 CYP2D6P10635 497 aa15.7■□□□□ 0.1
CNOT1-220ENST00000569916 SHMT1P34896 483 aa15.7■□□□□ 0.1
CNOT1-220ENST00000569916 FBXO46Q6PJ61 603 aaPredicted RBP15.7■□□□□ 0.1
CNOT1-220ENST00000569916 C17orf99Q6UX52 265 aa15.7■□□□□ 0.1
CNOT1-220ENST00000569916 PROCA1Q8NCQ7 364 aaPredicted RBP15.7■□□□□ 0.1
CNOT1-220ENST00000569916 APPBP2Q92624 585 aa15.7■□□□□ 0.1
CNOT1-220ENST00000569916 OSBP2Q969R2 916 aa15.7■□□□□ 0.1
CNOT1-220ENST00000569916 PARK7Q99497 189 aaKnown RBP15.7■□□□□ 0.1
CNOT1-220ENST00000569916 WDR18Q9BV38 432 aa15.7■□□□□ 0.1
CNOT1-220ENST00000569916 ATP8A2Q9NTI2 1148 aa15.7■□□□□ 0.1
CNOT1-220ENST00000569916 STAP2Q9UGK3 403 aa15.7■□□□□ 0.1
CNOT1-220ENST00000569916 AGTPBP1Q9UPW5 1226 aa15.7■□□□□ 0.1
CNOT1-220ENST00000569916 TRIM17Q9Y577 477 aa15.7■□□□□ 0.1
CNOT1-220ENST00000569916 CCDC85CA6NKD9 419 aa15.69■□□□□ 0.1
CNOT1-220ENST00000569916 GH2P01242 217 aa15.69■□□□□ 0.1
CNOT1-220ENST00000569916 ZFYP08048 801 aaPredicted RBP15.69■□□□□ 0.1
CNOT1-220ENST00000569916 CYP2C8P10632 490 aa15.69■□□□□ 0.1
CNOT1-220ENST00000569916 HMGCS2P54868 508 aa15.69■□□□□ 0.1
CNOT1-220ENST00000569916 SH3D19Q5HYK7 790 aa15.69■□□□□ 0.1
CNOT1-220ENST00000569916 TREML2Q5T2D2 321 aa15.69■□□□□ 0.1
CNOT1-220ENST00000569916 CPA4Q9UI42 421 aa15.69■□□□□ 0.1
CNOT1-220ENST00000569916 HPS5Q9UPZ3 1129 aa15.69■□□□□ 0.1
CNOT1-220ENST00000569916 SLC4A4Q9Y6R1 1079 aa15.69■□□□□ 0.1
CNOT1-220ENST00000569916 PDE1AP54750 535 aa15.68■□□□□ 0.1
CNOT1-220ENST00000569916 LACTBP83111 547 aaPredicted RBP15.68■□□□□ 0.1
CNOT1-220ENST00000569916 MTMR2Q13614 643 aa15.68■□□□□ 0.1
CNOT1-220ENST00000569916 CERKLQ49MI3 558 aaPredicted RBP15.68■□□□□ 0.1
CNOT1-220ENST00000569916 STRBPQ96SI9 672 aaKnown RBP15.68■□□□□ 0.1
CNOT1-220ENST00000569916 LNPKQ9C0E8 428 aa15.68■□□□□ 0.1
CNOT1-220ENST00000569916 ARHGAP39Q9C0H5 1083 aa15.68■□□□□ 0.1
CNOT1-220ENST00000569916 EFCC1Q9HA90 598 aa15.68■□□□□ 0.1
CNOT1-220ENST00000569916 GREB1LQ9C091 1923 aaPredicted RBP15.67■□□□□ 0.1
CNOT1-220ENST00000569916 M0R2C6 588 aa15.67■□□□□ 0.1
CNOT1-220ENST00000569916 BCRP11274 1271 aa15.67■□□□□ 0.1
CNOT1-220ENST00000569916 BACE1P56817 501 aa15.67■□□□□ 0.1
CNOT1-220ENST00000569916 IRX6P78412 446 aaPredicted RBP15.67■□□□□ 0.1
CNOT1-220ENST00000569916 ABCB5Q2M3G0 1257 aa15.67■□□□□ 0.1
CNOT1-220ENST00000569916 SLC44A5Q8NCS7 719 aa15.67■□□□□ 0.1
CNOT1-220ENST00000569916 FSD1Q9BTV5 496 aa15.67■□□□□ 0.1
CNOT1-220ENST00000569916 HTTP42858 3142 aa15.66■□□□□ 0.1
CNOT1-220ENST00000569916 CYP2D7A0A087X1C5 515 aa15.66■□□□□ 0.1
CNOT1-220ENST00000569916 USP17L10C9JJH3 530 aa15.66■□□□□ 0.1
CNOT1-220ENST00000569916 USP17L12C9JPN9 530 aa15.66■□□□□ 0.1
CNOT1-220ENST00000569916 USP17L21D6R901 530 aa15.66■□□□□ 0.1
CNOT1-220ENST00000569916 SMIM22K7EJ46 135 aa15.66■□□□□ 0.1
CNOT1-220ENST00000569916 GPAA1O43292 621 aa15.66■□□□□ 0.1
CNOT1-220ENST00000569916 CTGFP29279 349 aa15.66■□□□□ 0.1
CNOT1-220ENST00000569916 LRRFIP1Q32MZ4 808 aaKnown RBP15.66■□□□□ 0.1
CNOT1-220ENST00000569916 C12orf60Q5U649 245 aa15.66■□□□□ 0.1
CNOT1-220ENST00000569916 B4GALNT3Q6L9W6 998 aa15.66■□□□□ 0.1
CNOT1-220ENST00000569916 DYNLL2Q96FJ2 89 aa15.66■□□□□ 0.1
CNOT1-220ENST00000569916 DDRGK1Q96HY6 314 aa15.66■□□□□ 0.1
CNOT1-220ENST00000569916 TAOK2Q9UL54 1235 aa15.66■□□□□ 0.1
CNOT1-220ENST00000569916 PTPN22Q9Y2R2 807 aa15.66■□□□□ 0.1
CNOT1-220ENST00000569916 RBBP6Q7Z6E9 1792 aaKnown RBP15.66■□□□□ 0.1
CNOT1-220ENST00000569916 GSG1L2A8MUP6 293 aa15.65■□□□□ 0.1
CNOT1-220ENST00000569916 C19orf81C9J6K1 198 aa15.65■□□□□ 0.1
CNOT1-220ENST00000569916 GUCY1A2P33402 732 aa15.65■□□□□ 0.1
CNOT1-220ENST00000569916 NUCB1Q02818 461 aa15.65■□□□□ 0.1
CNOT1-220ENST00000569916 ZMYM1Q5SVZ6 1142 aa15.65■□□□□ 0.1
CNOT1-220ENST00000569916 CTR9Q6PD62 1173 aa15.65■□□□□ 0.1
CNOT1-220ENST00000569916 CHD1LQ86WJ1 897 aa15.65■□□□□ 0.1
CNOT1-220ENST00000569916 SEC62Q99442 399 aaKnown RBP15.65■□□□□ 0.1
CNOT1-220ENST00000569916 ARPP21Q9UBL0 812 aaPredicted RBP15.65■□□□□ 0.1
CNOT1-220ENST00000569916 SWAP70Q9UH65 585 aa15.65■□□□□ 0.1
CNOT1-220ENST00000569916 PNMA3Q9UL41 463 aa15.65■□□□□ 0.1
CNOT1-220ENST00000569916 PABPC4Q13310 644 aaKnown RBP eCLIP15.64■□□□□ 0.09
CNOT1-220ENST00000569916 KIF22Q14807 665 aa15.64■□□□□ 0.09
CNOT1-220ENST00000569916 RAB3GAP1Q15042 981 aa15.64■□□□□ 0.09
CNOT1-220ENST00000569916 ARHGEF6Q15052 776 aa15.64■□□□□ 0.09
CNOT1-220ENST00000569916 GIMAP6Q6P9H5 292 aa15.64■□□□□ 0.09
CNOT1-220ENST00000569916 C16orf86Q6ZW13 317 aa15.64■□□□□ 0.09
CNOT1-220ENST00000569916 AMOTL1Q8IY63 956 aa15.64■□□□□ 0.09
CNOT1-220ENST00000569916 SMCR8Q8TEV9 937 aaPredicted RBP15.64■□□□□ 0.09
CNOT1-220ENST00000569916 EVI5LQ96CN4 794 aa15.64■□□□□ 0.09
CNOT1-220ENST00000569916 EPB41L4AQ9HCS5 686 aaPredicted RBP15.64■□□□□ 0.09
CNOT1-220ENST00000569916 CABP5Q9NP86 173 aa15.64■□□□□ 0.09
CNOT1-220ENST00000569916 TMOD4Q9NZQ9 345 aa15.64■□□□□ 0.09
CNOT1-220ENST00000569916 ROBO3Q96MS0 1386 aa15.63■□□□□ 0.09
CNOT1-220ENST00000569916 ECM2O94769 699 aaPredicted RBP15.63■□□□□ 0.09
CNOT1-220ENST00000569916 GNAT2P19087 354 aa15.63■□□□□ 0.09
CNOT1-220ENST00000569916 SEPT2Q15019 361 aa15.63■□□□□ 0.09
CNOT1-220ENST00000569916 SBK1Q52WX2 424 aa15.63■□□□□ 0.09
CNOT1-220ENST00000569916 C12orf42Q96LP6 360 aa15.63■□□□□ 0.09
CNOT1-220ENST00000569916 FEZ1Q99689 392 aa15.63■□□□□ 0.09
CNOT1-220ENST00000569916 ASCC2Q9H1I8 757 aaPredicted RBP15.63■□□□□ 0.09
CNOT1-220ENST00000569916 EMILIN3Q9NT22 766 aa15.63■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms