RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 FLRT1Q9NZU1 646 aa14.69□□□□□ -0.06
CLK3-222ENST00000568232 SALL2Q9Y467 1007 aaPredicted RBP14.69□□□□□ -0.06
CLK3-222ENST00000568232 NDUFB9Q9Y6M9 179 aa14.69□□□□□ -0.06
CLK3-222ENST00000568232 MAST2Q6P0Q8 1798 aa14.69□□□□□ -0.06
CLK3-222ENST00000568232 CACNA1FO60840 1977 aa14.68□□□□□ -0.06
CLK3-222ENST00000568232 TMEM265A0A087WTH1 108 aa14.68□□□□□ -0.06
CLK3-222ENST00000568232 CNGA1P29973 690 aa14.68□□□□□ -0.06
CLK3-222ENST00000568232 MAPK4P31152 587 aa14.68□□□□□ -0.06
CLK3-222ENST00000568232 RFX5P48382 616 aaPredicted RBP14.68□□□□□ -0.06
CLK3-222ENST00000568232 RHBDL3P58872 404 aa14.68□□□□□ -0.06
CLK3-222ENST00000568232 MTMR2Q13614 643 aa14.68□□□□□ -0.06
CLK3-222ENST00000568232 PLEKHH3Q7Z736 793 aa14.68□□□□□ -0.06
CLK3-222ENST00000568232 DZIP1Q86YF9 867 aaKnown RBP14.68□□□□□ -0.06
CLK3-222ENST00000568232 APBA2Q99767 749 aa14.68□□□□□ -0.06
CLK3-222ENST00000568232 GNL3LQ9NVN8 582 aaKnown RBP14.68□□□□□ -0.06
CLK3-222ENST00000568232 ABCF2Q9UG63 623 aa14.68□□□□□ -0.06
CLK3-222ENST00000568232 DENND2AQ9ULE3 1009 aa14.68□□□□□ -0.06
CLK3-222ENST00000568232 MYH13Q9UKX3 1938 aa14.68□□□□□ -0.06
CLK3-222ENST00000568232 LTBP2Q14767 1821 aa14.67□□□□□ -0.06
CLK3-222ENST00000568232 HOXA7P31268 230 aaPredicted RBP14.67□□□□□ -0.06
CLK3-222ENST00000568232 ERVK-9P63128 1117 aa14.67□□□□□ -0.06
CLK3-222ENST00000568232 ERVK-24P63145 666 aa14.67□□□□□ -0.06
CLK3-222ENST00000568232 JAG1P78504 1218 aa14.67□□□□□ -0.06
CLK3-222ENST00000568232 GRIN2CQ14957 1233 aa14.67□□□□□ -0.06
CLK3-222ENST00000568232 ATP2B3Q16720 1220 aa14.67□□□□□ -0.06
CLK3-222ENST00000568232 CCDC184Q52MB2 194 aa14.67□□□□□ -0.06
CLK3-222ENST00000568232 SH3RF1Q7Z6J0 888 aa14.67□□□□□ -0.06
CLK3-222ENST00000568232 CCAR1Q8IX12 1150 aaKnown RBP14.67□□□□□ -0.06
CLK3-222ENST00000568232 FAM122AQ96E09 287 aa14.67□□□□□ -0.06
CLK3-222ENST00000568232 PAGR1Q9BTK6 254 aa14.67□□□□□ -0.06
CLK3-222ENST00000568232 TBC1D2Q9BYX2 928 aa14.67□□□□□ -0.06
CLK3-222ENST00000568232 DDX20Q9UHI6 824 aaKnown RBP14.67□□□□□ -0.06
CLK3-222ENST00000568232 BACE1P56817 501 aa14.66□□□□□ -0.06
CLK3-222ENST00000568232 SHROOM1Q2M3G4 852 aaPredicted RBP14.66□□□□□ -0.06
CLK3-222ENST00000568232 GJC2Q5T442 439 aaPredicted RBP14.66□□□□□ -0.06
CLK3-222ENST00000568232 LPAR1Q92633 364 aa14.66□□□□□ -0.06
CLK3-222ENST00000568232 EDC3Q96F86 508 aaKnown RBP14.66□□□□□ -0.06
CLK3-222ENST00000568232 FAM163AQ96GL9 167 aaPredicted RBP14.66□□□□□ -0.06
CLK3-222ENST00000568232 SIL1Q9H173 461 aa14.66□□□□□ -0.06
CLK3-222ENST00000568232 AS3MTQ9HBK9 375 aa14.66□□□□□ -0.06
CLK3-222ENST00000568232 TMOD4Q9NZQ9 345 aa14.66□□□□□ -0.06
CLK3-222ENST00000568232 MROH7-TTC4A0A0A0MT08 1334 aa14.66□□□□□ -0.06
CLK3-222ENST00000568232 MYH2Q9UKX2 1941 aa14.65□□□□□ -0.06
CLK3-222ENST00000568232 TRIM43BA6NCK2 446 aa14.65□□□□□ -0.06
CLK3-222ENST00000568232 DNM1LO00429 736 aa14.65□□□□□ -0.06
CLK3-222ENST00000568232 ADORA1P30542 326 aa14.65□□□□□ -0.06
CLK3-222ENST00000568232 MAP2K5Q13163 448 aa14.65□□□□□ -0.06
CLK3-222ENST00000568232 SLC39A5Q6ZMH5 540 aa14.65□□□□□ -0.06
CLK3-222ENST00000568232 ZNF384Q8TF68 577 aa14.65□□□□□ -0.06
CLK3-222ENST00000568232 TRIM43Q96BQ3 446 aaPredicted RBP14.65□□□□□ -0.06
CLK3-222ENST00000568232 WDR18Q9BV38 432 aa14.65□□□□□ -0.06
CLK3-222ENST00000568232 GPR75-ASB3A0A0A6YYF3 556 aa14.64□□□□□ -0.07
CLK3-222ENST00000568232 SEMA3EO15041 775 aa14.64□□□□□ -0.07
CLK3-222ENST00000568232 CYP2C19P33261 490 aa14.64□□□□□ -0.07
CLK3-222ENST00000568232 MECOMQ03112 1051 aa14.64□□□□□ -0.07
CLK3-222ENST00000568232 RASGRF1Q13972 1273 aa14.64□□□□□ -0.07
CLK3-222ENST00000568232 TRIM60Q495X7 471 aa14.64□□□□□ -0.07
CLK3-222ENST00000568232 MFSD14CQ5VZR4 134 aa14.64□□□□□ -0.07
CLK3-222ENST00000568232 CCDC102BQ68D86 513 aa14.64□□□□□ -0.07
CLK3-222ENST00000568232 SLF2Q8IX21 1173 aa14.64□□□□□ -0.07
CLK3-222ENST00000568232 ZGPATQ8N5A5 531 aaKnown RBP14.64□□□□□ -0.07
CLK3-222ENST00000568232 TRPV1Q8NER1 839 aa14.64□□□□□ -0.07
CLK3-222ENST00000568232 PPM1EQ8WY54 764 aa14.64□□□□□ -0.07
CLK3-222ENST00000568232 USP44Q9H0E7 712 aa14.64□□□□□ -0.07
CLK3-222ENST00000568232 CWC22Q9HCG8 908 aaKnown RBP14.64□□□□□ -0.07
CLK3-222ENST00000568232 FRMPD3Q5JV73 1810 aa14.64□□□□□ -0.07
CLK3-222ENST00000568232 GABBR2O75899 941 aa14.63□□□□□ -0.07
CLK3-222ENST00000568232 ITGB8P26012 769 aa14.63□□□□□ -0.07
CLK3-222ENST00000568232 EPHB4P54760 987 aa14.63□□□□□ -0.07
CLK3-222ENST00000568232 ANO1Q5XXA6 986 aa14.63□□□□□ -0.07
CLK3-222ENST00000568232 PDLIM7Q9NR12 457 aa14.63□□□□□ -0.07
CLK3-222ENST00000568232 CEP126Q9P2H0 1117 aa14.63□□□□□ -0.07
CLK3-222ENST00000568232 CNMDO75829 334 aa14.62□□□□□ -0.07
CLK3-222ENST00000568232 ATP2B2Q01814 1243 aa14.62□□□□□ -0.07
CLK3-222ENST00000568232 MAP3K12Q12852 859 aa14.62□□□□□ -0.07
CLK3-222ENST00000568232 WDR78Q5VTH9 848 aa14.62□□□□□ -0.07
CLK3-222ENST00000568232 WDR63Q8IWG1 891 aa14.62□□□□□ -0.07
CLK3-222ENST00000568232 NPLOC4Q8TAT6 608 aa14.62□□□□□ -0.07
CLK3-222ENST00000568232 RNPC3Q96LT9 517 aaKnown RBP14.62□□□□□ -0.07
CLK3-222ENST00000568232 ATAD5Q96QE3 1844 aa14.62□□□□□ -0.07
CLK3-222ENST00000568232 XIRP2A4UGR9 3374 aa14.61□□□□□ -0.07
CLK3-222ENST00000568232 C19orf81C9J6K1 198 aa14.61□□□□□ -0.07
CLK3-222ENST00000568232 USP17L10C9JJH3 530 aa14.61□□□□□ -0.07
CLK3-222ENST00000568232 MSCO60682 206 aa14.61□□□□□ -0.07
CLK3-222ENST00000568232 ADAMTS19Q8TE59 1207 aa14.61□□□□□ -0.07
CLK3-222ENST00000568232 FERMT2Q96AC1 680 aa14.61□□□□□ -0.07
CLK3-222ENST00000568232 EMILIN3Q9NT22 766 aa14.61□□□□□ -0.07
CLK3-222ENST00000568232 GDF11O95390 407 aa14.6□□□□□ -0.07
CLK3-222ENST00000568232 ASNSP08243 561 aa14.6□□□□□ -0.07
CLK3-222ENST00000568232 CD44P16070 742 aaKnown RBP14.6□□□□□ -0.07
CLK3-222ENST00000568232 PTPREP23469 700 aa14.6□□□□□ -0.07
CLK3-222ENST00000568232 DNAJB2P25686 324 aa14.6□□□□□ -0.07
CLK3-222ENST00000568232 ADCYAP1R1P41586 468 aa14.6□□□□□ -0.07
CLK3-222ENST00000568232 TIMM10P62072 90 aa14.6□□□□□ -0.07
CLK3-222ENST00000568232 SPTY2D1Q68D10 685 aaPredicted RBP14.6□□□□□ -0.07
CLK3-222ENST00000568232 ERICH6Q7L0X2 663 aa14.6□□□□□ -0.07
CLK3-222ENST00000568232 ARRDC4Q8NCT1 418 aa14.6□□□□□ -0.07
CLK3-222ENST00000568232 ASB2Q96Q27 587 aa14.6□□□□□ -0.07
CLK3-222ENST00000568232 ZNF576Q9H609 170 aa14.6□□□□□ -0.07
CLK3-222ENST00000568232 HERC5Q9UII4 1024 aaKnown RBP14.6□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 111.7 ms