RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 GJA8P48165 433 aa19.59■□□□□ 0.73
CLN3-229ENST00000567963 IRF5Q13568 498 aa19.59■□□□□ 0.73
CLN3-229ENST00000567963 MTMR2Q13614 643 aa19.59■□□□□ 0.73
CLN3-229ENST00000567963 PXYLP1Q8TE99 480 aa19.59■□□□□ 0.73
CLN3-229ENST00000567963 COA7Q96BR5 231 aa19.59■□□□□ 0.73
CLN3-229ENST00000567963 GDF11O95390 407 aa19.58■□□□□ 0.72
CLN3-229ENST00000567963 SHROOM1Q2M3G4 852 aaPredicted RBP19.58■□□□□ 0.72
CLN3-229ENST00000567963 ZBTB40Q9NUA8 1239 aa19.58■□□□□ 0.72
CLN3-229ENST00000567963 DDX19BQ9UMR2 479 aa19.58■□□□□ 0.72
CLN3-229ENST00000567963 MYH1P12882 1939 aa19.57■□□□□ 0.72
CLN3-229ENST00000567963 C19orf81C9J6K1 198 aa19.57■□□□□ 0.72
CLN3-229ENST00000567963 USP17L10C9JJH3 530 aa19.57■□□□□ 0.72
CLN3-229ENST00000567963 ELNP15502 786 aa19.57■□□□□ 0.72
CLN3-229ENST00000567963 HOXA7P31268 230 aaPredicted RBP19.57■□□□□ 0.72
CLN3-229ENST00000567963 USP5P45974 858 aa19.57■□□□□ 0.72
CLN3-229ENST00000567963 SIRT2Q8IXJ6 389 aa19.57■□□□□ 0.72
CLN3-229ENST00000567963 TMOD4Q9NZQ9 345 aa19.57■□□□□ 0.72
CLN3-229ENST00000567963 COG6Q9Y2V7 657 aa19.57■□□□□ 0.72
CLN3-229ENST00000567963 CLASRPQ8N2M8 674 aaKnown RBP19.56■□□□□ 0.72
CLN3-229ENST00000567963 KIF1BPQ96EK5 621 aa19.56■□□□□ 0.72
CLN3-229ENST00000567963 UNC93B1Q9H1C4 597 aa19.56■□□□□ 0.72
CLN3-229ENST00000567963 ZBTB21Q9ULJ3 1066 aa19.56■□□□□ 0.72
CLN3-229ENST00000567963 TTF1Q15361 905 aaPredicted RBP19.55■□□□□ 0.72
CLN3-229ENST00000567963 TATDN1Q6P1N9 297 aa19.55■□□□□ 0.72
CLN3-229ENST00000567963 APBB1O00213 710 aa19.54■□□□□ 0.72
CLN3-229ENST00000567963 HMMRO75330 724 aa19.54■□□□□ 0.72
CLN3-229ENST00000567963 INHAP05111 366 aa19.54■□□□□ 0.72
CLN3-229ENST00000567963 IRX3P78415 501 aaPredicted RBP19.54■□□□□ 0.72
CLN3-229ENST00000567963 HABP4Q5JVS0 413 aaKnown RBP19.54■□□□□ 0.72
CLN3-229ENST00000567963 UBE2Q1Q7Z7E8 422 aa19.54■□□□□ 0.72
CLN3-229ENST00000567963 U2AF1L4Q8WU68 220 aaKnown RBP19.54■□□□□ 0.72
CLN3-229ENST00000567963 P2RX7Q99572 595 aaKnown RBP19.54■□□□□ 0.72
CLN3-229ENST00000567963 RIOK1Q9BRS2 568 aaKnown RBP19.54■□□□□ 0.72
CLN3-229ENST00000567963 EHD4Q9H223 541 aa19.54■□□□□ 0.72
CLN3-229ENST00000567963 SERPINB13Q9UIV8 391 aa19.54■□□□□ 0.72
CLN3-229ENST00000567963 SGPL1O95470 568 aa19.54■□□□□ 0.72
CLN3-229ENST00000567963 TTC6Q86TZ1 520 aa19.54■□□□□ 0.72
CLN3-229ENST00000567963 PPIL4Q8WUA2 492 aaKnown RBP eCLIP19.54■□□□□ 0.72
CLN3-229ENST00000567963 MORF4L1Q9UBU8 362 aa19.54■□□□□ 0.72
CLN3-229ENST00000567963 TAOK2Q9UL54 1235 aa19.54■□□□□ 0.72
CLN3-229ENST00000567963 GH2P01242 217 aa19.53■□□□□ 0.72
CLN3-229ENST00000567963 IFIT2P09913 472 aaKnown RBP19.53■□□□□ 0.72
CLN3-229ENST00000567963 SLC9C2Q5TAH2 1124 aa19.53■□□□□ 0.72
CLN3-229ENST00000567963 CHMP4BQ9H444 224 aaKnown RBP19.53■□□□□ 0.72
CLN3-229ENST00000567963 EMILIN3Q9NT22 766 aa19.53■□□□□ 0.72
CLN3-229ENST00000567963 RCAN3Q9UKA8 241 aa19.53■□□□□ 0.72
CLN3-229ENST00000567963 GJD2Q9UKL4 321 aa19.53■□□□□ 0.72
CLN3-229ENST00000567963 MAGEB6P1A0A0J9YX57 407 aa19.52■□□□□ 0.72
CLN3-229ENST00000567963 RAB11FIP3O75154 756 aa19.52■□□□□ 0.72
CLN3-229ENST00000567963 HERVK_113P62684 666 aa19.52■□□□□ 0.72
CLN3-229ENST00000567963 PDE6AP16499 860 aa19.51■□□□□ 0.71
CLN3-229ENST00000567963 PLCD1P51178 756 aa19.51■□□□□ 0.71
CLN3-229ENST00000567963 CERKLQ49MI3 558 aaPredicted RBP19.51■□□□□ 0.71
CLN3-229ENST00000567963 USP17L2Q6R6M4 530 aa19.51■□□□□ 0.71
CLN3-229ENST00000567963 DPF3Q92784 378 aa19.51■□□□□ 0.71
CLN3-229ENST00000567963 TXNRD2Q9NNW7 524 aa19.51■□□□□ 0.71
CLN3-229ENST00000567963 PAK6Q9NQU5 681 aaPredicted RBP19.51■□□□□ 0.71
CLN3-229ENST00000567963 PCDH10Q9P2E7 1040 aa19.51■□□□□ 0.71
CLN3-229ENST00000567963 H0YGN5 161 aa19.5■□□□□ 0.71
CLN3-229ENST00000567963 GOLIM4O00461 696 aa19.5■□□□□ 0.71
CLN3-229ENST00000567963 CAPN2P17655 700 aa19.5■□□□□ 0.71
CLN3-229ENST00000567963 GPRC5AQ8NFJ5 357 aa19.5■□□□□ 0.71
CLN3-229ENST00000567963 DEFB118Q96PH6 123 aa19.5■□□□□ 0.71
CLN3-229ENST00000567963 DNAJC2Q99543 621 aaKnown RBP19.5■□□□□ 0.71
CLN3-229ENST00000567963 BCL11AQ9H165 835 aa19.5■□□□□ 0.71
CLN3-229ENST00000567963 RBPJLQ9UBG7 517 aa19.5■□□□□ 0.71
CLN3-229ENST00000567963 ZNF532Q9HCE3 1301 aa19.5■□□□□ 0.71
CLN3-229ENST00000567963 TCRBV5S4A2TA0A5A2 114 aa19.49■□□□□ 0.71
CLN3-229ENST00000567963 PEX10O60683 326 aa19.49■□□□□ 0.71
CLN3-229ENST00000567963 RAB3GAP1Q15042 981 aa19.49■□□□□ 0.71
CLN3-229ENST00000567963 COLQQ9Y215 455 aaPredicted RBP19.49■□□□□ 0.71
CLN3-229ENST00000567963 TFRCP02786 760 aaKnown RBP19.48■□□□□ 0.71
CLN3-229ENST00000567963 HMGCRP04035 888 aa19.48■□□□□ 0.71
CLN3-229ENST00000567963 POLR3DP05423 398 aaPredicted RBP19.48■□□□□ 0.71
CLN3-229ENST00000567963 SHMT1P34896 483 aa19.48■□□□□ 0.71
CLN3-229ENST00000567963 ABCB5Q2M3G0 1257 aa19.48■□□□□ 0.71
CLN3-229ENST00000567963 Q3C1V9 767 aa19.48■□□□□ 0.71
CLN3-229ENST00000567963 EDC3Q96F86 508 aaKnown RBP19.48■□□□□ 0.71
CLN3-229ENST00000567963 C12orf42Q96LP6 360 aa19.48■□□□□ 0.71
CLN3-229ENST00000567963 HTATIP2Q9BUP3 242 aa19.48■□□□□ 0.71
CLN3-229ENST00000567963 CRNKL1Q9BZJ0 848 aaKnown RBP19.48■□□□□ 0.71
CLN3-229ENST00000567963 PLXNB2O15031 1838 aa19.48■□□□□ 0.71
CLN3-229ENST00000567963 DDX60LQ5H9U9 1706 aaKnown RBP19.48■□□□□ 0.71
CLN3-229ENST00000567963 FARP2O94887 1054 aaPredicted RBP19.48■□□□□ 0.71
CLN3-229ENST00000567963 GABPAQ06546 454 aa19.48■□□□□ 0.71
CLN3-229ENST00000567963 POTEEQ6S8J3 1075 aa19.48■□□□□ 0.71
CLN3-229ENST00000567963 GTF3C2Q8WUA4 911 aaPredicted RBP19.48■□□□□ 0.71
CLN3-229ENST00000567963 CRISPLD2Q9H0B8 497 aa19.48■□□□□ 0.71
CLN3-229ENST00000567963 CABP5Q9NP86 173 aa19.48■□□□□ 0.71
CLN3-229ENST00000567963 USP14P54578 494 aa19.47■□□□□ 0.71
CLN3-229ENST00000567963 ERVK-9P63128 1117 aa19.47■□□□□ 0.71
CLN3-229ENST00000567963 ERVK-24P63145 666 aa19.47■□□□□ 0.71
CLN3-229ENST00000567963 PDE3AQ14432 1141 aa19.47■□□□□ 0.71
CLN3-229ENST00000567963 ZYXQ15942 572 aaKnown RBP19.47■□□□□ 0.71
CLN3-229ENST00000567963 C20orf194Q5TEA3 1177 aa19.47■□□□□ 0.71
CLN3-229ENST00000567963 FEZ1Q99689 392 aa19.47■□□□□ 0.71
CLN3-229ENST00000567963 KIAA1683Q9H0B3 1180 aa19.47■□□□□ 0.71
CLN3-229ENST00000567963 BOLA2Q9H3K6 86 aa19.47■□□□□ 0.71
CLN3-229ENST00000567963 PAG1Q9NWQ8 432 aa19.47■□□□□ 0.71
CLN3-229ENST00000567963 MCM9Q9NXL9 1143 aa19.47■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms