RNA–Protein interactions for RNA: ENST00000566926.1

CLK3-218, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-218ENST00000566926 PUS7LQ9H0K6 701 aaKnown RBP16.1■□□□□ 0.17
CLK3-218ENST00000566926 R3HDMLQ9H3Y0 253 aa16.1■□□□□ 0.17
CLK3-218ENST00000566926 DNAJC18Q9H819 358 aa16.1■□□□□ 0.17
CLK3-218ENST00000566926 SLC4A4Q9Y6R1 1079 aa16.1■□□□□ 0.17
CLK3-218ENST00000566926 TRIM75PA6NK02 468 aa16.09■□□□□ 0.17
CLK3-218ENST00000566926 PDHXO00330 501 aa16.09■□□□□ 0.17
CLK3-218ENST00000566926 TLR2O60603 784 aa16.09■□□□□ 0.17
CLK3-218ENST00000566926 GNAT2P19087 354 aa16.09■□□□□ 0.17
CLK3-218ENST00000566926 PLCD1P51178 756 aa16.09■□□□□ 0.17
CLK3-218ENST00000566926 CERKLQ49MI3 558 aaPredicted RBP16.09■□□□□ 0.17
CLK3-218ENST00000566926 BMP2KLQ5H9B9 411 aa16.09■□□□□ 0.17
CLK3-218ENST00000566926 TATDN1Q6P1N9 297 aa16.09■□□□□ 0.17
CLK3-218ENST00000566926 GADL1Q6ZQY3 521 aa16.09■□□□□ 0.17
CLK3-218ENST00000566926 TICAM2Q86XR7 235 aa16.09■□□□□ 0.17
CLK3-218ENST00000566926 WDR18Q9BV38 432 aa16.09■□□□□ 0.17
CLK3-218ENST00000566926 OSBPL3Q9H4L5 887 aa16.09■□□□□ 0.17
CLK3-218ENST00000566926 CABP5Q9NP86 173 aa16.09■□□□□ 0.17
CLK3-218ENST00000566926 SLC45A1Q9Y2W3 748 aa16.09■□□□□ 0.17
CLK3-218ENST00000566926 LOC285556D6RIA3 1793 aa16.08■□□□□ 0.17
CLK3-218ENST00000566926 EIF5BO60841 1220 aaKnown RBP16.08■□□□□ 0.16
CLK3-218ENST00000566926 SPP2Q13103 211 aa16.08■□□□□ 0.16
CLK3-218ENST00000566926 PABPC4Q13310 644 aaKnown RBP eCLIP16.08■□□□□ 0.16
CLK3-218ENST00000566926 RRP1BQ14684 758 aaKnown RBP16.08■□□□□ 0.16
CLK3-218ENST00000566926 SLFNL1Q499Z3 407 aa16.08■□□□□ 0.16
CLK3-218ENST00000566926 PROCA1Q8NCQ7 364 aaPredicted RBP16.08■□□□□ 0.16
CLK3-218ENST00000566926 EVI5LQ96CN4 794 aa16.08■□□□□ 0.16
CLK3-218ENST00000566926 STRBPQ96SI9 672 aaKnown RBP16.08■□□□□ 0.16
CLK3-218ENST00000566926 PARK7Q99497 189 aaKnown RBP16.08■□□□□ 0.16
CLK3-218ENST00000566926 SWAP70Q9UH65 585 aa16.08■□□□□ 0.16
CLK3-218ENST00000566926 ZBTB21Q9ULJ3 1066 aa16.08■□□□□ 0.16
CLK3-218ENST00000566926 C19orf81C9J6K1 198 aa16.07■□□□□ 0.16
CLK3-218ENST00000566926 PRKAB2O43741 272 aa16.07■□□□□ 0.16
CLK3-218ENST00000566926 GDF11O95390 407 aa16.07■□□□□ 0.16
CLK3-218ENST00000566926 MOGSQ13724 837 aa16.07■□□□□ 0.16
CLK3-218ENST00000566926 GIMAP6Q6P9H5 292 aa16.07■□□□□ 0.16
CLK3-218ENST00000566926 PLEKHM2Q8IWE5 1019 aa16.07■□□□□ 0.16
CLK3-218ENST00000566926 OSBP2Q969R2 916 aa16.07■□□□□ 0.16
CLK3-218ENST00000566926 ABHD8Q96I13 439 aa16.07■□□□□ 0.16
CLK3-218ENST00000566926 PNMA3Q9UL41 463 aa16.07■□□□□ 0.16
CLK3-218ENST00000566926 USP17L10C9JJH3 530 aa16.06■□□□□ 0.16
CLK3-218ENST00000566926 CHGBP05060 677 aa16.06■□□□□ 0.16
CLK3-218ENST00000566926 GABPAQ06546 454 aa16.06■□□□□ 0.16
CLK3-218ENST00000566926 KIF22Q14807 665 aa16.06■□□□□ 0.16
CLK3-218ENST00000566926 ABCB5Q2M3G0 1257 aa16.06■□□□□ 0.16
CLK3-218ENST00000566926 SH3D19Q5HYK7 790 aa16.06■□□□□ 0.16
CLK3-218ENST00000566926 GPAT2Q6NUI2 795 aa16.06■□□□□ 0.16
CLK3-218ENST00000566926 CCDC84Q86UT8 332 aaPredicted RBP16.06■□□□□ 0.16
CLK3-218ENST00000566926 TMOD4Q9NZQ9 345 aa16.06■□□□□ 0.16
CLK3-218ENST00000566926 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.06■□□□□ 0.16
CLK3-218ENST00000566926 ARPP21Q9UBL0 812 aaPredicted RBP16.06■□□□□ 0.16
CLK3-218ENST00000566926 AGTPBP1Q9UPW5 1226 aa16.06■□□□□ 0.16
CLK3-218ENST00000566926 USP17L12C9JPN9 530 aa16.05■□□□□ 0.16
CLK3-218ENST00000566926 USP17L21D6R901 530 aa16.05■□□□□ 0.16
CLK3-218ENST00000566926 GPAA1O43292 621 aa16.05■□□□□ 0.16
CLK3-218ENST00000566926 GH2P01242 217 aa16.05■□□□□ 0.16
CLK3-218ENST00000566926 SHMT1P34896 483 aa16.05■□□□□ 0.16
CLK3-218ENST00000566926 BACE1P56817 501 aa16.05■□□□□ 0.16
CLK3-218ENST00000566926 C12orf60Q5U649 245 aa16.05■□□□□ 0.16
CLK3-218ENST00000566926 SKAP1Q86WV1 359 aa16.05■□□□□ 0.16
CLK3-218ENST00000566926 MGAMO43451 1857 aa16.05■□□□□ 0.16
CLK3-218ENST00000566926 HMGCS2P54868 508 aa16.04■□□□□ 0.16
CLK3-218ENST00000566926 SBK1Q52WX2 424 aa16.04■□□□□ 0.16
CLK3-218ENST00000566926 ZMYM1Q5SVZ6 1142 aa16.04■□□□□ 0.16
CLK3-218ENST00000566926 FBXO46Q6PJ61 603 aaPredicted RBP16.04■□□□□ 0.16
CLK3-218ENST00000566926 C17orf99Q6UX52 265 aa16.04■□□□□ 0.16
CLK3-218ENST00000566926 CD99L2Q8TCZ2 262 aa16.04■□□□□ 0.16
CLK3-218ENST00000566926 CCDC17Q96LX7 622 aa16.04■□□□□ 0.16
CLK3-218ENST00000566926 NACAP1Q9BZK3 213 aa16.04■□□□□ 0.16
CLK3-218ENST00000566926 EFCC1Q9HA90 598 aa16.04■□□□□ 0.16
CLK3-218ENST00000566926 TRIM17Q9Y577 477 aa16.04■□□□□ 0.16
CLK3-218ENST00000566926 GSG1L2A8MUP6 293 aa16.03■□□□□ 0.16
CLK3-218ENST00000566926 TRIM6-TRIM34B2RNG4 842 aa16.03■□□□□ 0.16
CLK3-218ENST00000566926 PATL2C9JE40 543 aaKnown RBP16.03■□□□□ 0.16
CLK3-218ENST00000566926 GNRH1P01148 92 aa16.03■□□□□ 0.16
CLK3-218ENST00000566926 APPP05067 770 aa16.03■□□□□ 0.16
CLK3-218ENST00000566926 OSBPP22059 807 aa16.03■□□□□ 0.16
CLK3-218ENST00000566926 MTMR2Q13614 643 aa16.03■□□□□ 0.16
CLK3-218ENST00000566926 RAB3GAP1Q15042 981 aa16.03■□□□□ 0.16
CLK3-218ENST00000566926 TTC22Q5TAA0 569 aa16.03■□□□□ 0.16
CLK3-218ENST00000566926 CTR9Q6PD62 1173 aa16.03■□□□□ 0.16
CLK3-218ENST00000566926 SMCR8Q8TEV9 937 aaPredicted RBP16.03■□□□□ 0.16
CLK3-218ENST00000566926 M0R2C6 588 aa16.02■□□□□ 0.16
CLK3-218ENST00000566926 MPHOSPH10O00566 681 aaKnown RBP16.02■□□□□ 0.16
CLK3-218ENST00000566926 CAPN15O75808 1086 aa16.02■□□□□ 0.16
CLK3-218ENST00000566926 CYP2D6P10635 497 aa16.02■□□□□ 0.16
CLK3-218ENST00000566926 TDO2P48775 406 aa16.02■□□□□ 0.16
CLK3-218ENST00000566926 USP14P54578 494 aa16.02■□□□□ 0.16
CLK3-218ENST00000566926 JAG1P78504 1218 aa16.02■□□□□ 0.16
CLK3-218ENST00000566926 USP17L2Q6R6M4 530 aa16.02■□□□□ 0.16
CLK3-218ENST00000566926 TMEM179Q6ZVK1 233 aa16.02■□□□□ 0.16
CLK3-218ENST00000566926 C16orf86Q6ZW13 317 aa16.02■□□□□ 0.16
CLK3-218ENST00000566926 OTOP1Q7RTM1 612 aa16.02■□□□□ 0.16
CLK3-218ENST00000566926 FEZ1Q99689 392 aa16.02■□□□□ 0.16
CLK3-218ENST00000566926 ZNF287Q9HBT7 754 aa16.02■□□□□ 0.16
CLK3-218ENST00000566926 HELLSQ9NRZ9 838 aa16.02■□□□□ 0.16
CLK3-218ENST00000566926 CPA4Q9UI42 421 aa16.02■□□□□ 0.16
CLK3-218ENST00000566926 ADGRA2Q96PE1 1338 aa16.01■□□□□ 0.15
CLK3-218ENST00000566926 CYP2C8P10632 490 aa16.01■□□□□ 0.15
CLK3-218ENST00000566926 CDK8P49336 464 aa16.01■□□□□ 0.15
CLK3-218ENST00000566926 LACTBP83111 547 aaPredicted RBP16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms