RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 ALX1Q15699 326 aa23.35■■□□□ 1.33
CLN3-225ENST00000566824 MS4A4AQ96JQ5 239 aa23.35■■□□□ 1.33
CLN3-225ENST00000566824 NACAP1Q9BZK3 213 aa23.35■■□□□ 1.33
CLN3-225ENST00000566824 INCENPQ9NQS7 918 aa23.35■■□□□ 1.33
CLN3-225ENST00000566824 PICK1Q9NRD5 415 aa23.35■■□□□ 1.33
CLN3-225ENST00000566824 ZHX2Q9Y6X8 837 aa23.35■■□□□ 1.33
CLN3-225ENST00000566824 ROBO3Q96MS0 1386 aa23.35■■□□□ 1.33
CLN3-225ENST00000566824 GH2P01242 217 aa23.34■■□□□ 1.33
CLN3-225ENST00000566824 CTDSPL2Q05D32 466 aa23.34■■□□□ 1.33
CLN3-225ENST00000566824 PPATQ06203 517 aa23.34■■□□□ 1.33
CLN3-225ENST00000566824 PPIL2Q13356 520 aa23.34■■□□□ 1.33
CLN3-225ENST00000566824 CERKLQ49MI3 558 aaPredicted RBP23.34■■□□□ 1.33
CLN3-225ENST00000566824 ZBTB21Q9ULJ3 1066 aa23.34■■□□□ 1.33
CLN3-225ENST00000566824 GUCY1A2P33402 732 aa23.33■■□□□ 1.33
CLN3-225ENST00000566824 AMOTL1Q8IY63 956 aa23.33■■□□□ 1.33
CLN3-225ENST00000566824 AFG3L2Q9Y4W6 797 aa23.33■■□□□ 1.33
CLN3-225ENST00000566824 LAMA4Q16363 1823 aa23.33■■□□□ 1.32
CLN3-225ENST00000566824 SGSM2O43147 1006 aa23.33■■□□□ 1.32
CLN3-225ENST00000566824 PRDM1O75626 825 aa23.33■■□□□ 1.32
CLN3-225ENST00000566824 AKR1B1P15121 316 aa23.33■■□□□ 1.32
CLN3-225ENST00000566824 PTH1RQ03431 593 aa23.33■■□□□ 1.32
CLN3-225ENST00000566824 PPARAQ07869 468 aa23.33■■□□□ 1.32
CLN3-225ENST00000566824 BRI3BPQ8WY22 251 aa23.33■■□□□ 1.32
CLN3-225ENST00000566824 PTPN18Q99952 460 aa23.33■■□□□ 1.32
CLN3-225ENST00000566824 NBPF3Q9H094 633 aa23.33■■□□□ 1.32
CLN3-225ENST00000566824 WBP1LQ9NX94 342 aa23.33■■□□□ 1.32
CLN3-225ENST00000566824 SWAP70Q9UH65 585 aa23.33■■□□□ 1.32
CLN3-225ENST00000566824 MFAP1P55081 439 aaKnown RBP23.32■■□□□ 1.32
CLN3-225ENST00000566824 MOGSQ13724 837 aa23.32■■□□□ 1.32
CLN3-225ENST00000566824 ABCB5Q2M3G0 1257 aa23.32■■□□□ 1.32
CLN3-225ENST00000566824 KCNH4Q9UQ05 1017 aa23.32■■□□□ 1.32
CLN3-225ENST00000566824 GREB1LQ9C091 1923 aaPredicted RBP23.31■■□□□ 1.32
CLN3-225ENST00000566824 RAD50Q92878 1312 aa23.31■■□□□ 1.32
CLN3-225ENST00000566824 IGF2BP3O00425 579 aaKnown RBP eCLIP23.31■■□□□ 1.32
CLN3-225ENST00000566824 RASA1P20936 1047 aa23.31■■□□□ 1.32
CLN3-225ENST00000566824 TM4SF4P48230 202 aa23.31■■□□□ 1.32
CLN3-225ENST00000566824 HAND2P61296 217 aa23.31■■□□□ 1.32
CLN3-225ENST00000566824 DGKZQ13574 1117 aa23.31■■□□□ 1.32
CLN3-225ENST00000566824 CLEC10AQ8IUN9 316 aa23.31■■□□□ 1.32
CLN3-225ENST00000566824 ZMYM6O95789 1325 aa23.3■■□□□ 1.32
CLN3-225ENST00000566824 CCL15-CCL14A0A0B4J2E2 113 aa23.3■■□□□ 1.32
CLN3-225ENST00000566824 TESPA1A2RU30 521 aaPredicted RBP23.3■■□□□ 1.32
CLN3-225ENST00000566824 MANSC4A6NHS7 340 aaPredicted RBP23.3■■□□□ 1.32
CLN3-225ENST00000566824 TRIM75PA6NK02 468 aa23.3■■□□□ 1.32
CLN3-225ENST00000566824 USP17L5A8MUK1 530 aa23.3■■□□□ 1.32
CLN3-225ENST00000566824 ASNSP08243 561 aa23.3■■□□□ 1.32
CLN3-225ENST00000566824 SEPT2Q15019 361 aa23.3■■□□□ 1.32
CLN3-225ENST00000566824 CCL15Q16663 113 aa23.3■■□□□ 1.32
CLN3-225ENST00000566824 NKX2-3Q8TAU0 364 aa23.3■■□□□ 1.32
CLN3-225ENST00000566824 RUFY2Q8WXA3 655 aa23.3■■□□□ 1.32
CLN3-225ENST00000566824 ESYT1Q9BSJ8 1104 aa23.3■■□□□ 1.32
CLN3-225ENST00000566824 MPHOSPH10O00566 681 aaKnown RBP23.29■■□□□ 1.32
CLN3-225ENST00000566824 HSPA1AP0DMV8 641 aaKnown RBP23.29■■□□□ 1.32
CLN3-225ENST00000566824 HSPA1BP0DMV9 641 aaKnown RBP23.29■■□□□ 1.32
CLN3-225ENST00000566824 GTF2A2P52657 109 aa23.29■■□□□ 1.32
CLN3-225ENST00000566824 SPP2Q13103 211 aa23.29■■□□□ 1.32
CLN3-225ENST00000566824 DSCC1Q9BVC3 393 aa23.29■■□□□ 1.32
CLN3-225ENST00000566824 GNL3Q9BVP2 549 aaKnown RBP eCLIP23.29■■□□□ 1.32
CLN3-225ENST00000566824 ANAPC4Q9UJX5 808 aa23.29■■□□□ 1.32
CLN3-225ENST00000566824 DDX52Q9Y2R4 599 aaKnown RBP eCLIP23.29■■□□□ 1.32
CLN3-225ENST00000566824 MAP2K1Q02750 393 aaPredicted RBP23.28■■□□□ 1.32
CLN3-225ENST00000566824 SNAPC2Q13487 334 aa23.28■■□□□ 1.32
CLN3-225ENST00000566824 RAB3GAP1Q15042 981 aa23.28■■□□□ 1.32
CLN3-225ENST00000566824 RNF186Q9NXI6 227 aa23.28■■□□□ 1.32
CLN3-225ENST00000566824 TSKSQ9UJT2 592 aa23.28■■□□□ 1.32
CLN3-225ENST00000566824 CXCL11O14625 94 aa23.27■■□□□ 1.32
CLN3-225ENST00000566824 CDC45O75419 566 aa23.27■■□□□ 1.32
CLN3-225ENST00000566824 IFNL1Q8IU54 200 aa23.27■■□□□ 1.32
CLN3-225ENST00000566824 SIAH1Q8IUQ4 282 aa23.27■■□□□ 1.32
CLN3-225ENST00000566824 TBC1D10CQ8IV04 446 aa23.27■■□□□ 1.32
CLN3-225ENST00000566824 FAM43AQ8N2R8 423 aa23.27■■□□□ 1.32
CLN3-225ENST00000566824 ZNF280CQ8ND82 737 aa23.27■■□□□ 1.32
CLN3-225ENST00000566824 ACER1Q8TDN7 264 aa23.27■■□□□ 1.32
CLN3-225ENST00000566824 WDR18Q9BV38 432 aa23.27■■□□□ 1.32
CLN3-225ENST00000566824 MKNK2Q9HBH9 465 aa23.27■■□□□ 1.32
CLN3-225ENST00000566824 GINM1Q9NU53 330 aa23.27■■□□□ 1.32
CLN3-225ENST00000566824 LOC285556D6RIA3 1793 aa23.27■■□□□ 1.32
CLN3-225ENST00000566824 A0A0G2JLL6 359 aaPredicted RBP23.26■■□□□ 1.31
CLN3-225ENST00000566824 FOXN1O15353 648 aa23.26■■□□□ 1.31
CLN3-225ENST00000566824 SREBF2Q12772 1141 aa23.26■■□□□ 1.31
CLN3-225ENST00000566824 PRRT2Q7Z6L0 340 aaPredicted RBP23.26■■□□□ 1.31
CLN3-225ENST00000566824 R3HDMLQ9H3Y0 253 aa23.26■■□□□ 1.31
CLN3-225ENST00000566824 CABP5Q9NP86 173 aa23.26■■□□□ 1.31
CLN3-225ENST00000566824 TAOK2Q9UL54 1235 aa23.26■■□□□ 1.31
CLN3-225ENST00000566824 BTBD19C9JJ37 291 aa23.25■■□□□ 1.31
CLN3-225ENST00000566824 TRPA1O75762 1119 aa23.25■■□□□ 1.31
CLN3-225ENST00000566824 CETPP11597 493 aa23.25■■□□□ 1.31
CLN3-225ENST00000566824 FAM47AQ5JRC9 791 aa23.25■■□□□ 1.31
CLN3-225ENST00000566824 GPAT2Q6NUI2 795 aa23.25■■□□□ 1.31
CLN3-225ENST00000566824 LSG1Q9H089 658 aaKnown RBP23.25■■□□□ 1.31
CLN3-225ENST00000566824 TAF6LQ9Y6J9 622 aa23.25■■□□□ 1.31
CLN3-225ENST00000566824 A0A1W2PRG0 241 aa23.24■■□□□ 1.31
CLN3-225ENST00000566824 HMGCS2P54868 508 aa23.24■■□□□ 1.31
CLN3-225ENST00000566824 INHBEP58166 350 aa23.24■■□□□ 1.31
CLN3-225ENST00000566824 MTMR2Q13614 643 aa23.24■■□□□ 1.31
CLN3-225ENST00000566824 TMEM179Q6ZVK1 233 aa23.24■■□□□ 1.31
CLN3-225ENST00000566824 CCDC17Q96LX7 622 aa23.24■■□□□ 1.31
CLN3-225ENST00000566824 FGRP09769 529 aa23.23■■□□□ 1.31
CLN3-225ENST00000566824 GADL1Q6ZQY3 521 aa23.23■■□□□ 1.31
CLN3-225ENST00000566824 REM2Q8IYK8 340 aaPredicted RBP23.23■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms