RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 PCDHB15Q9Y5E8 787 aa25.07■■□□□ 1.6
CLN3-219ENST00000565778 C19orf81C9J6K1 198 aa25.06■■□□□ 1.6
CLN3-219ENST00000565778 USP17L10C9JJH3 530 aa25.06■■□□□ 1.6
CLN3-219ENST00000565778 ADD2P35612 726 aa25.06■■□□□ 1.6
CLN3-219ENST00000565778 PLCD1P51178 756 aa25.06■■□□□ 1.6
CLN3-219ENST00000565778 MTMR2Q13614 643 aa25.06■■□□□ 1.6
CLN3-219ENST00000565778 SLFNL1Q499Z3 407 aa25.06■■□□□ 1.6
CLN3-219ENST00000565778 TATDN1Q6P1N9 297 aa25.06■■□□□ 1.6
CLN3-219ENST00000565778 RAET1EQ8TD07 263 aa25.06■■□□□ 1.6
CLN3-219ENST00000565778 ARMT1Q9H993 441 aa25.06■■□□□ 1.6
CLN3-219ENST00000565778 MCM9Q9NXL9 1143 aa25.06■■□□□ 1.6
CLN3-219ENST00000565778 PHIPQ8WWQ0 1821 aa25.05■■□□□ 1.6
CLN3-219ENST00000565778 POTEFA5A3E0 1075 aa25.05■■□□□ 1.6
CLN3-219ENST00000565778 MYCP01106 439 aaPredicted RBP25.05■■□□□ 1.6
CLN3-219ENST00000565778 GH2P01242 217 aa25.05■■□□□ 1.6
CLN3-219ENST00000565778 CERKLQ49MI3 558 aaPredicted RBP25.05■■□□□ 1.6
CLN3-219ENST00000565778 LCORLQ8N3X6 602 aa25.05■■□□□ 1.6
CLN3-219ENST00000565778 ANKRD13CQ8N6S4 541 aa25.05■■□□□ 1.6
CLN3-219ENST00000565778 SH3TC2Q8TF17 1288 aa25.05■■□□□ 1.6
CLN3-219ENST00000565778 SDR42E1Q8WUS8 393 aa25.05■■□□□ 1.6
CLN3-219ENST00000565778 ZNF333Q96JL9 665 aa25.05■■□□□ 1.6
CLN3-219ENST00000565778 ZSCAN25Q6NSZ9 544 aa25.04■■□□□ 1.6
CLN3-219ENST00000565778 GPATCH3Q96I76 525 aa25.04■■□□□ 1.6
CLN3-219ENST00000565778 CDK5RAP2Q96SN8 1893 aa25.04■■□□□ 1.6
CLN3-219ENST00000565778 FOCADQ5VW36 1801 aa25.03■■□□□ 1.6
CLN3-219ENST00000565778 ASCC2Q9H1I8 757 aaPredicted RBP25.03■■□□□ 1.6
CLN3-219ENST00000565778 CABP5Q9NP86 173 aa25.03■■□□□ 1.6
CLN3-219ENST00000565778 MYPNQ86TC9 1320 aa25.03■■□□□ 1.6
CLN3-219ENST00000565778 SIPA1L1O43166 1804 aa25.02■■□□□ 1.6
CLN3-219ENST00000565778 MBD4O95243 580 aa25.02■■□□□ 1.6
CLN3-219ENST00000565778 GCLCP48506 637 aaPredicted RBP25.02■■□□□ 1.6
CLN3-219ENST00000565778 RAB3GAP1Q15042 981 aa25.02■■□□□ 1.6
CLN3-219ENST00000565778 UBE3CQ15386 1083 aa25.02■■□□□ 1.6
CLN3-219ENST00000565778 ABCB5Q2M3G0 1257 aa25.02■■□□□ 1.6
CLN3-219ENST00000565778 DCP1AQ9NPI6 582 aaPredicted RBP25.02■■□□□ 1.6
CLN3-219ENST00000565778 PRKAB2O43741 272 aa25.01■■□□□ 1.59
CLN3-219ENST00000565778 EN2P19622 333 aaPredicted RBP25.01■■□□□ 1.59
CLN3-219ENST00000565778 IRX3P78415 501 aaPredicted RBP25.01■■□□□ 1.59
CLN3-219ENST00000565778 CRBNQ96SW2 442 aa25.01■■□□□ 1.59
CLN3-219ENST00000565778 ZSWIM8A7E2V4 1837 aa25■■□□□ 1.59
CLN3-219ENST00000565778 MYH1P12882 1939 aa25■■□□□ 1.59
CLN3-219ENST00000565778 TNPO2O14787 897 aaKnown RBP25■■□□□ 1.59
CLN3-219ENST00000565778 CHGBP05060 677 aa25■■□□□ 1.59
CLN3-219ENST00000565778 GRK4P32298 578 aa25■■□□□ 1.59
CLN3-219ENST00000565778 PRKCZQ05513 592 aa25■■□□□ 1.59
CLN3-219ENST00000565778 USP17L2Q6R6M4 530 aa25■■□□□ 1.59
CLN3-219ENST00000565778 ATP8A2Q9NTI2 1148 aa25■■□□□ 1.59
CLN3-219ENST00000565778 BIN2Q9UBW5 565 aaPredicted RBP25■■□□□ 1.59
CLN3-219ENST00000565778 GABRQQ9UN88 632 aa25■■□□□ 1.59
CLN3-219ENST00000565778 HTTP42858 3142 aa25■■□□□ 1.59
CLN3-219ENST00000565778 ATAD5Q96QE3 1844 aa25■■□□□ 1.59
CLN3-219ENST00000565778 PTPRFP10586 1907 aa24.99■■□□□ 1.59
CLN3-219ENST00000565778 HOXA7P31268 230 aaPredicted RBP24.99■■□□□ 1.59
CLN3-219ENST00000565778 SHMT1P34896 483 aa24.99■■□□□ 1.59
CLN3-219ENST00000565778 FAM110CQ1W6H9 321 aa24.99■■□□□ 1.59
CLN3-219ENST00000565778 P2RX7Q99572 595 aaKnown RBP24.99■■□□□ 1.59
CLN3-219ENST00000565778 FEZ1Q99689 392 aa24.99■■□□□ 1.59
CLN3-219ENST00000565778 CYP2D6P10635 497 aa24.98■■□□□ 1.59
CLN3-219ENST00000565778 GABPAQ06546 454 aa24.98■■□□□ 1.59
CLN3-219ENST00000565778 ZYXQ15942 572 aaKnown RBP24.98■■□□□ 1.59
CLN3-219ENST00000565778 TSHZ3Q63HK5 1081 aa24.98■■□□□ 1.59
CLN3-219ENST00000565778 COA7Q96BR5 231 aa24.98■■□□□ 1.59
CLN3-219ENST00000565778 DDRGK1Q96HY6 314 aa24.98■■□□□ 1.59
CLN3-219ENST00000565778 EMILIN3Q9NT22 766 aa24.98■■□□□ 1.59
CLN3-219ENST00000565778 MPHOSPH10O00566 681 aaKnown RBP24.97■■□□□ 1.59
CLN3-219ENST00000565778 EVX2Q03828 476 aa24.97■■□□□ 1.59
CLN3-219ENST00000565778 PUS7LQ9H0K6 701 aaKnown RBP24.97■■□□□ 1.59
CLN3-219ENST00000565778 ZBTB47Q9UFB7 747 aaPredicted RBP24.97■■□□□ 1.59
CLN3-219ENST00000565778 SLC4A4Q9Y6R1 1079 aa24.97■■□□□ 1.59
CLN3-219ENST00000565778 FLT3LGP49771 235 aa24.96■■□□□ 1.59
CLN3-219ENST00000565778 AMOTL1Q8IY63 956 aa24.96■■□□□ 1.59
CLN3-219ENST00000565778 KBTBD3Q8NAB2 608 aa24.96■■□□□ 1.59
CLN3-219ENST00000565778 USP14P54578 494 aa24.95■■□□□ 1.58
CLN3-219ENST00000565778 ACER1Q8TDN7 264 aa24.95■■□□□ 1.58
CLN3-219ENST00000565778 SWAP70Q9UH65 585 aa24.95■■□□□ 1.58
CLN3-219ENST00000565778 USP17L12C9JPN9 530 aa24.94■■□□□ 1.58
CLN3-219ENST00000565778 USP17L21D6R901 530 aa24.94■■□□□ 1.58
CLN3-219ENST00000565778 ADCY3O60266 1144 aa24.94■■□□□ 1.58
CLN3-219ENST00000565778 HERVK_113P62684 666 aa24.94■■□□□ 1.58
CLN3-219ENST00000565778 UBXN2AP68543 259 aa24.94■■□□□ 1.58
CLN3-219ENST00000565778 SEPT2Q15019 361 aa24.94■■□□□ 1.58
CLN3-219ENST00000565778 MTFR1Q15390 333 aa24.94■■□□□ 1.58
CLN3-219ENST00000565778 SLAIN1Q8ND83 568 aa24.94■■□□□ 1.58
CLN3-219ENST00000565778 DYNLL2Q96FJ2 89 aa24.94■■□□□ 1.58
CLN3-219ENST00000565778 TAOK2Q9UL54 1235 aa24.94■■□□□ 1.58
CLN3-219ENST00000565778 CENPFP49454 3210 aa24.94■■□□□ 1.58
CLN3-219ENST00000565778 TNRC18O15417 2968 aaPredicted RBP24.93■■□□□ 1.58
CLN3-219ENST00000565778 ERC2O15083 957 aa24.93■■□□□ 1.58
CLN3-219ENST00000565778 GUCY1A2P33402 732 aa24.93■■□□□ 1.58
CLN3-219ENST00000565778 SLC44A5Q8NCS7 719 aa24.93■■□□□ 1.58
CLN3-219ENST00000565778 KIAA1683Q9H0B3 1180 aa24.93■■□□□ 1.58
CLN3-219ENST00000565778 MORF4L1Q9UBU8 362 aa24.93■■□□□ 1.58
CLN3-219ENST00000565778 LOC285556D6RIA3 1793 aa24.93■■□□□ 1.58
CLN3-219ENST00000565778 TTC41PQ6P2S7 1318 aa24.92■■□□□ 1.58
CLN3-219ENST00000565778 CYP2D7A0A087X1C5 515 aa24.92■■□□□ 1.58
CLN3-219ENST00000565778 USP17L15C9J2P7 530 aa24.92■■□□□ 1.58
CLN3-219ENST00000565778 USP17L13C9JLJ4 530 aa24.92■■□□□ 1.58
CLN3-219ENST00000565778 USP17L11C9JVI0 530 aa24.92■■□□□ 1.58
CLN3-219ENST00000565778 USP17L18D6R9N7 530 aa24.92■■□□□ 1.58
CLN3-219ENST00000565778 USP17L22D6RA61 530 aa24.92■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms