RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 LNPKQ9C0E8 428 aa16.1■□□□□ 0.17
CLK3-216ENST00000564468 PUS7LQ9H0K6 701 aaKnown RBP16.1■□□□□ 0.17
CLK3-216ENST00000564468 R3HDMLQ9H3Y0 253 aa16.1■□□□□ 0.17
CLK3-216ENST00000564468 DNAJC18Q9H819 358 aa16.1■□□□□ 0.17
CLK3-216ENST00000564468 SLC4A4Q9Y6R1 1079 aa16.1■□□□□ 0.17
CLK3-216ENST00000564468 TRIM75PA6NK02 468 aa16.09■□□□□ 0.17
CLK3-216ENST00000564468 PDHXO00330 501 aa16.09■□□□□ 0.17
CLK3-216ENST00000564468 TLR2O60603 784 aa16.09■□□□□ 0.17
CLK3-216ENST00000564468 GNAT2P19087 354 aa16.09■□□□□ 0.17
CLK3-216ENST00000564468 PLCD1P51178 756 aa16.09■□□□□ 0.17
CLK3-216ENST00000564468 CERKLQ49MI3 558 aaPredicted RBP16.09■□□□□ 0.17
CLK3-216ENST00000564468 B4GALNT3Q6L9W6 998 aa16.09■□□□□ 0.17
CLK3-216ENST00000564468 TATDN1Q6P1N9 297 aa16.09■□□□□ 0.17
CLK3-216ENST00000564468 GADL1Q6ZQY3 521 aa16.09■□□□□ 0.17
CLK3-216ENST00000564468 CHD1LQ86WJ1 897 aa16.09■□□□□ 0.17
CLK3-216ENST00000564468 TICAM2Q86XR7 235 aa16.09■□□□□ 0.17
CLK3-216ENST00000564468 WDR18Q9BV38 432 aa16.09■□□□□ 0.17
CLK3-216ENST00000564468 CABP5Q9NP86 173 aa16.09■□□□□ 0.17
CLK3-216ENST00000564468 SLC45A1Q9Y2W3 748 aa16.09■□□□□ 0.17
CLK3-216ENST00000564468 LOC285556D6RIA3 1793 aa16.08■□□□□ 0.17
CLK3-216ENST00000564468 NUCB1Q02818 461 aa16.08■□□□□ 0.16
CLK3-216ENST00000564468 SPP2Q13103 211 aa16.08■□□□□ 0.16
CLK3-216ENST00000564468 PABPC4Q13310 644 aaKnown RBP eCLIP16.08■□□□□ 0.16
CLK3-216ENST00000564468 RRP1BQ14684 758 aaKnown RBP16.08■□□□□ 0.16
CLK3-216ENST00000564468 SLFNL1Q499Z3 407 aa16.08■□□□□ 0.16
CLK3-216ENST00000564468 PROCA1Q8NCQ7 364 aaPredicted RBP16.08■□□□□ 0.16
CLK3-216ENST00000564468 EVI5LQ96CN4 794 aa16.08■□□□□ 0.16
CLK3-216ENST00000564468 STRBPQ96SI9 672 aaKnown RBP16.08■□□□□ 0.16
CLK3-216ENST00000564468 PARK7Q99497 189 aaKnown RBP16.08■□□□□ 0.16
CLK3-216ENST00000564468 SWAP70Q9UH65 585 aa16.08■□□□□ 0.16
CLK3-216ENST00000564468 ZBTB21Q9ULJ3 1066 aa16.08■□□□□ 0.16
CLK3-216ENST00000564468 C19orf81C9J6K1 198 aa16.07■□□□□ 0.16
CLK3-216ENST00000564468 PRKAB2O43741 272 aa16.07■□□□□ 0.16
CLK3-216ENST00000564468 GDF11O95390 407 aa16.07■□□□□ 0.16
CLK3-216ENST00000564468 MOGSQ13724 837 aa16.07■□□□□ 0.16
CLK3-216ENST00000564468 GIMAP6Q6P9H5 292 aa16.07■□□□□ 0.16
CLK3-216ENST00000564468 OSBP2Q969R2 916 aa16.07■□□□□ 0.16
CLK3-216ENST00000564468 PNMA3Q9UL41 463 aa16.07■□□□□ 0.16
CLK3-216ENST00000564468 USP17L10C9JJH3 530 aa16.06■□□□□ 0.16
CLK3-216ENST00000564468 CHGBP05060 677 aa16.06■□□□□ 0.16
CLK3-216ENST00000564468 IRX6P78412 446 aaPredicted RBP16.06■□□□□ 0.16
CLK3-216ENST00000564468 GABPAQ06546 454 aa16.06■□□□□ 0.16
CLK3-216ENST00000564468 KIF22Q14807 665 aa16.06■□□□□ 0.16
CLK3-216ENST00000564468 ABCB5Q2M3G0 1257 aa16.06■□□□□ 0.16
CLK3-216ENST00000564468 SH3D19Q5HYK7 790 aa16.06■□□□□ 0.16
CLK3-216ENST00000564468 GPAT2Q6NUI2 795 aa16.06■□□□□ 0.16
CLK3-216ENST00000564468 CCDC84Q86UT8 332 aaPredicted RBP16.06■□□□□ 0.16
CLK3-216ENST00000564468 TMOD4Q9NZQ9 345 aa16.06■□□□□ 0.16
CLK3-216ENST00000564468 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.06■□□□□ 0.16
CLK3-216ENST00000564468 ARPP21Q9UBL0 812 aaPredicted RBP16.06■□□□□ 0.16
CLK3-216ENST00000564468 AGTPBP1Q9UPW5 1226 aa16.06■□□□□ 0.16
CLK3-216ENST00000564468 MKI67P46013 3256 aaKnown RBP16.05■□□□□ 0.16
CLK3-216ENST00000564468 USP17L12C9JPN9 530 aa16.05■□□□□ 0.16
CLK3-216ENST00000564468 USP17L21D6R901 530 aa16.05■□□□□ 0.16
CLK3-216ENST00000564468 GPAA1O43292 621 aa16.05■□□□□ 0.16
CLK3-216ENST00000564468 GH2P01242 217 aa16.05■□□□□ 0.16
CLK3-216ENST00000564468 SHMT1P34896 483 aa16.05■□□□□ 0.16
CLK3-216ENST00000564468 BACE1P56817 501 aa16.05■□□□□ 0.16
CLK3-216ENST00000564468 C12orf60Q5U649 245 aa16.05■□□□□ 0.16
CLK3-216ENST00000564468 OSBPL3Q9H4L5 887 aa16.05■□□□□ 0.16
CLK3-216ENST00000564468 MGAMO43451 1857 aa16.05■□□□□ 0.16
CLK3-216ENST00000564468 HMGCS2P54868 508 aa16.04■□□□□ 0.16
CLK3-216ENST00000564468 SBK1Q52WX2 424 aa16.04■□□□□ 0.16
CLK3-216ENST00000564468 ZMYM1Q5SVZ6 1142 aa16.04■□□□□ 0.16
CLK3-216ENST00000564468 C17orf99Q6UX52 265 aa16.04■□□□□ 0.16
CLK3-216ENST00000564468 CD99L2Q8TCZ2 262 aa16.04■□□□□ 0.16
CLK3-216ENST00000564468 CCDC17Q96LX7 622 aa16.04■□□□□ 0.16
CLK3-216ENST00000564468 NACAP1Q9BZK3 213 aa16.04■□□□□ 0.16
CLK3-216ENST00000564468 EFCC1Q9HA90 598 aa16.04■□□□□ 0.16
CLK3-216ENST00000564468 TRIM17Q9Y577 477 aa16.04■□□□□ 0.16
CLK3-216ENST00000564468 GSG1L2A8MUP6 293 aa16.03■□□□□ 0.16
CLK3-216ENST00000564468 TRIM6-TRIM34B2RNG4 842 aa16.03■□□□□ 0.16
CLK3-216ENST00000564468 PATL2C9JE40 543 aaKnown RBP16.03■□□□□ 0.16
CLK3-216ENST00000564468 GNRH1P01148 92 aa16.03■□□□□ 0.16
CLK3-216ENST00000564468 APPP05067 770 aa16.03■□□□□ 0.16
CLK3-216ENST00000564468 OSBPP22059 807 aa16.03■□□□□ 0.16
CLK3-216ENST00000564468 MTMR2Q13614 643 aa16.03■□□□□ 0.16
CLK3-216ENST00000564468 RAB3GAP1Q15042 981 aa16.03■□□□□ 0.16
CLK3-216ENST00000564468 HABP4Q5JVS0 413 aaKnown RBP16.03■□□□□ 0.16
CLK3-216ENST00000564468 CTR9Q6PD62 1173 aa16.03■□□□□ 0.16
CLK3-216ENST00000564468 PLEKHM2Q8IWE5 1019 aa16.03■□□□□ 0.16
CLK3-216ENST00000564468 SMCR8Q8TEV9 937 aaPredicted RBP16.03■□□□□ 0.16
CLK3-216ENST00000564468 M0R2C6 588 aa16.02■□□□□ 0.16
CLK3-216ENST00000564468 MPHOSPH10O00566 681 aaKnown RBP16.02■□□□□ 0.16
CLK3-216ENST00000564468 CYP2D6P10635 497 aa16.02■□□□□ 0.16
CLK3-216ENST00000564468 TDO2P48775 406 aa16.02■□□□□ 0.16
CLK3-216ENST00000564468 USP14P54578 494 aa16.02■□□□□ 0.16
CLK3-216ENST00000564468 JAG1P78504 1218 aa16.02■□□□□ 0.16
CLK3-216ENST00000564468 USP17L2Q6R6M4 530 aa16.02■□□□□ 0.16
CLK3-216ENST00000564468 TMEM179Q6ZVK1 233 aa16.02■□□□□ 0.16
CLK3-216ENST00000564468 C16orf86Q6ZW13 317 aa16.02■□□□□ 0.16
CLK3-216ENST00000564468 OTOP1Q7RTM1 612 aa16.02■□□□□ 0.16
CLK3-216ENST00000564468 FEZ1Q99689 392 aa16.02■□□□□ 0.16
CLK3-216ENST00000564468 ZNF287Q9HBT7 754 aa16.02■□□□□ 0.16
CLK3-216ENST00000564468 HELLSQ9NRZ9 838 aa16.02■□□□□ 0.16
CLK3-216ENST00000564468 CPA4Q9UI42 421 aa16.02■□□□□ 0.16
CLK3-216ENST00000564468 ADGRA2Q96PE1 1338 aa16.01■□□□□ 0.15
CLK3-216ENST00000564468 CENPFP49454 3210 aa16.01■□□□□ 0.15
CLK3-216ENST00000564468 CYP2C8P10632 490 aa16.01■□□□□ 0.15
CLK3-216ENST00000564468 CDK8P49336 464 aa16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms