RNA–Protein interactions for RNA: ENST00000564252.1

NME3-206, Transcript of NME/NM23 nucleoside diphosphate kinase 3, humanhuman

TSL 2

Gene NME3, Length 599 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME3-206ENST00000564252 GINM1Q9NU53 330 aa29.12■■■□□ 2.25
NME3-206ENST00000564252 MYH1P12882 1939 aa29.12■■■□□ 2.25
NME3-206ENST00000564252 GDF11O95390 407 aa29.11■■■□□ 2.25
NME3-206ENST00000564252 HLA-DOAP06340 250 aa29.11■■■□□ 2.25
NME3-206ENST00000564252 UBE2Q1Q7Z7E8 422 aa29.11■■■□□ 2.25
NME3-206ENST00000564252 CERS3Q8IU89 383 aa29.11■■■□□ 2.25
NME3-206ENST00000564252 ZBTB21Q9ULJ3 1066 aa29.11■■■□□ 2.25
NME3-206ENST00000564252 INHAP05111 366 aa29.1■■■□□ 2.25
NME3-206ENST00000564252 HSP90AB4PQ58FF6 505 aa29.1■■■□□ 2.25
NME3-206ENST00000564252 RHPN1Q8TCX5 695 aa29.1■■■□□ 2.25
NME3-206ENST00000564252 IL1RAPL2Q9NP60 686 aa29.1■■■□□ 2.25
NME3-206ENST00000564252 PCDH10Q9P2E7 1040 aa29.1■■■□□ 2.25
NME3-206ENST00000564252 MS4A1P11836 297 aa29.09■■■□□ 2.25
NME3-206ENST00000564252 MAP3K12Q12852 859 aa29.09■■■□□ 2.25
NME3-206ENST00000564252 TMED8Q6PL24 325 aaPredicted RBP29.09■■■□□ 2.25
NME3-206ENST00000564252 U2AF1L4Q8WU68 220 aaKnown RBP29.09■■■□□ 2.25
NME3-206ENST00000564252 TMOD4Q9NZQ9 345 aa29.09■■■□□ 2.25
NME3-206ENST00000564252 HOXA7P31268 230 aaPredicted RBP29.08■■■□□ 2.25
NME3-206ENST00000564252 MORF4L1Q9UBU8 362 aa29.08■■■□□ 2.25
NME3-206ENST00000564252 C19orf81C9J6K1 198 aa29.07■■■□□ 2.24
NME3-206ENST00000564252 USP17L10C9JJH3 530 aa29.07■■■□□ 2.24
NME3-206ENST00000564252 USP5P45974 858 aa29.07■■■□□ 2.24
NME3-206ENST00000564252 TAOK2Q9UL54 1235 aa29.07■■■□□ 2.24
NME3-206ENST00000564252 IRX3P78415 501 aaPredicted RBP29.06■■■□□ 2.24
NME3-206ENST00000564252 TATDN1Q6P1N9 297 aa29.06■■■□□ 2.24
NME3-206ENST00000564252 H0YGN5 161 aa29.05■■■□□ 2.24
NME3-206ENST00000564252 SGPL1O95470 568 aa29.05■■■□□ 2.24
NME3-206ENST00000564252 RPAP2Q8IXW5 612 aaPredicted RBP29.05■■■□□ 2.24
NME3-206ENST00000564252 P2RX7Q99572 595 aaKnown RBP29.05■■■□□ 2.24
NME3-206ENST00000564252 RIOK1Q9BRS2 568 aaKnown RBP29.05■■■□□ 2.24
NME3-206ENST00000564252 EHD4Q9H223 541 aa29.05■■■□□ 2.24
NME3-206ENST00000564252 GJD2Q9UKL4 321 aa29.05■■■□□ 2.24
NME3-206ENST00000564252 DDX60LQ5H9U9 1706 aaKnown RBP29.04■■■□□ 2.24
NME3-206ENST00000564252 SIRT2Q8IXJ6 389 aa29.04■■■□□ 2.24
NME3-206ENST00000564252 PAK6Q9NQU5 681 aaPredicted RBP29.04■■■□□ 2.24
NME3-206ENST00000564252 ZBTB40Q9NUA8 1239 aa29.04■■■□□ 2.24
NME3-206ENST00000564252 DDX19BQ9UMR2 479 aa29.04■■■□□ 2.24
NME3-206ENST00000564252 COG6Q9Y2V7 657 aa29.04■■■□□ 2.24
NME3-206ENST00000564252 PLXNB2O15031 1838 aa29.04■■■□□ 2.24
NME3-206ENST00000564252 GH2P01242 217 aa29.03■■■□□ 2.24
NME3-206ENST00000564252 KIF1BPQ96EK5 621 aa29.03■■■□□ 2.24
NME3-206ENST00000564252 EMILIN3Q9NT22 766 aa29.03■■■□□ 2.24
NME3-206ENST00000564252 SERPINB13Q9UIV8 391 aa29.03■■■□□ 2.24
NME3-206ENST00000564252 COLQQ9Y215 455 aaPredicted RBP29.03■■■□□ 2.24
NME3-206ENST00000564252 FARP2O94887 1054 aaPredicted RBP29.02■■■□□ 2.24
NME3-206ENST00000564252 HERVK_113P62684 666 aa29.02■■■□□ 2.24
NME3-206ENST00000564252 TTF1Q15361 905 aaPredicted RBP29.02■■■□□ 2.24
NME3-206ENST00000564252 CLASRPQ8N2M8 674 aaKnown RBP29.02■■■□□ 2.24
NME3-206ENST00000564252 DPF3Q92784 378 aa29.02■■■□□ 2.24
NME3-206ENST00000564252 DEFB118Q96PH6 123 aa29.02■■■□□ 2.24
NME3-206ENST00000564252 TXNRD2Q9NNW7 524 aa29.02■■■□□ 2.24
NME3-206ENST00000564252 APBB1O00213 710 aa29.01■■■□□ 2.23
NME3-206ENST00000564252 PEX10O60683 326 aa29.01■■■□□ 2.23
NME3-206ENST00000564252 HMMRO75330 724 aa29.01■■■□□ 2.23
NME3-206ENST00000564252 TTC6Q86TZ1 520 aa29.01■■■□□ 2.23
NME3-206ENST00000564252 PPIL4Q8WUA2 492 aaKnown RBP eCLIP29.01■■■□□ 2.23
NME3-206ENST00000564252 PDE6AP16499 860 aa29■■■□□ 2.23
NME3-206ENST00000564252 USP17L2Q6R6M4 530 aa29■■■□□ 2.23
NME3-206ENST00000564252 HTATIP2Q9BUP3 242 aa29■■■□□ 2.23
NME3-206ENST00000564252 NAV1Q8NEY1 1877 aa29■■■□□ 2.23
NME3-206ENST00000564252 RANBP2P49792 3224 aaKnown RBP28.99■■■□□ 2.23
NME3-206ENST00000564252 MAGEB6P1A0A0J9YX57 407 aa28.99■■■□□ 2.23
NME3-206ENST00000564252 HMGCRP04035 888 aa28.99■■■□□ 2.23
NME3-206ENST00000564252 CAPN2P17655 700 aa28.99■■■□□ 2.23
NME3-206ENST00000564252 PLCD1P51178 756 aa28.99■■■□□ 2.23
NME3-206ENST00000564252 SLC9C2Q5TAH2 1124 aa28.99■■■□□ 2.23
NME3-206ENST00000564252 RBPJLQ9UBG7 517 aa28.99■■■□□ 2.23
NME3-206ENST00000564252 IFIT2P09913 472 aaKnown RBP28.98■■■□□ 2.23
NME3-206ENST00000564252 GPRC5AQ8NFJ5 357 aa28.98■■■□□ 2.23
NME3-206ENST00000564252 C12orf42Q96LP6 360 aa28.98■■■□□ 2.23
NME3-206ENST00000564252 CRISPLD2Q9H0B8 497 aa28.98■■■□□ 2.23
NME3-206ENST00000564252 GOLIM4O00461 696 aa28.97■■■□□ 2.23
NME3-206ENST00000564252 TFRCP02786 760 aaKnown RBP28.97■■■□□ 2.23
NME3-206ENST00000564252 SHMT1P34896 483 aa28.97■■■□□ 2.23
NME3-206ENST00000564252 CERKLQ49MI3 558 aaPredicted RBP28.97■■■□□ 2.23
NME3-206ENST00000564252 POTEEQ6S8J3 1075 aa28.97■■■□□ 2.23
NME3-206ENST00000564252 DNAJC2Q99543 621 aaKnown RBP28.97■■■□□ 2.23
NME3-206ENST00000564252 XRN2Q9H0D6 950 aaKnown RBP eCLIP28.97■■■□□ 2.231e-12■■□□□ 11.8
NME3-206ENST00000564252 TCRBV5S4A2TA0A5A2 114 aa28.96■■■□□ 2.23
NME3-206ENST00000564252 RAB11FIP3O75154 756 aa28.96■■■□□ 2.23
NME3-206ENST00000564252 FXR1P51114 621 aaKnown RBP eCLIP28.96■■■□□ 2.23
NME3-206ENST00000564252 TRIM32Q13049 653 aa28.96■■■□□ 2.23
NME3-206ENST00000564252 ABCB5Q2M3G0 1257 aa28.96■■■□□ 2.23
NME3-206ENST00000564252 GTF3C2Q8WUA4 911 aaPredicted RBP28.96■■■□□ 2.23
NME3-206ENST00000564252 CRNKL1Q9BZJ0 848 aaKnown RBP28.96■■■□□ 2.23
NME3-206ENST00000564252 ZNF532Q9HCE3 1301 aa28.95■■■□□ 2.23
NME3-206ENST00000564252 ERVK-9P63128 1117 aa28.95■■■□□ 2.22
NME3-206ENST00000564252 ERVK-24P63145 666 aa28.95■■■□□ 2.22
NME3-206ENST00000564252 RAB3GAP1Q15042 981 aa28.95■■■□□ 2.22
NME3-206ENST00000564252 ZYXQ15942 572 aaKnown RBP28.95■■■□□ 2.22
NME3-206ENST00000564252 Q3C1V9 767 aa28.95■■■□□ 2.22
NME3-206ENST00000564252 RCAN3Q9UKA8 241 aa28.95■■■□□ 2.22
NME3-206ENST00000564252 TRIOBPQ9H2D6 2365 aa28.95■■■□□ 2.22
NME3-206ENST00000564252 POLR3DP05423 398 aaPredicted RBP28.94■■■□□ 2.22
NME3-206ENST00000564252 GABPAQ06546 454 aa28.94■■■□□ 2.22
NME3-206ENST00000564252 TRIB2Q92519 343 aa28.94■■■□□ 2.22
NME3-206ENST00000564252 EDC3Q96F86 508 aaKnown RBP28.94■■■□□ 2.22
NME3-206ENST00000564252 FEZ1Q99689 392 aa28.94■■■□□ 2.22
NME3-206ENST00000564252 KIAA1683Q9H0B3 1180 aa28.94■■■□□ 2.22
NME3-206ENST00000564252 MAPK4P31152 587 aa28.93■■■□□ 2.22
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms