RNA–Protein interactions for RNA: ENST00000563396.1

SMPD3-204, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 3

Gene SMPD3, Length 608 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-204ENST00000563396 TRIM34Q9BYJ4 488 aa17.03■□□□□ 0.32
SMPD3-204ENST00000563396 CRNKL1Q9BZJ0 848 aaKnown RBP17.03■□□□□ 0.32
SMPD3-204ENST00000563396 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.03■□□□□ 0.32
SMPD3-204ENST00000563396 ECHDC1Q9NTX5 307 aa17.03■□□□□ 0.32
SMPD3-204ENST00000563396 PNMA3Q9UL41 463 aa17.03■□□□□ 0.32
SMPD3-204ENST00000563396 PTCH2Q9Y6C5 1203 aa17.03■□□□□ 0.32
SMPD3-204ENST00000563396 GREB1LQ9C091 1923 aaPredicted RBP17.02■□□□□ 0.32
SMPD3-204ENST00000563396 GDF11O95390 407 aa17.02■□□□□ 0.32
SMPD3-204ENST00000563396 HMGCS2P54868 508 aa17.02■□□□□ 0.32
SMPD3-204ENST00000563396 UBE3CQ15386 1083 aa17.02■□□□□ 0.32
SMPD3-204ENST00000563396 ZNF333Q96JL9 665 aa17.02■□□□□ 0.32
SMPD3-204ENST00000563396 TRIM47Q96LD4 638 aa17.02■□□□□ 0.32
SMPD3-204ENST00000563396 TAOK2Q9UL54 1235 aa17.02■□□□□ 0.32
SMPD3-204ENST00000563396 SHMT1P34896 483 aa17.01■□□□□ 0.31
SMPD3-204ENST00000563396 PLCD1P51178 756 aa17.01■□□□□ 0.31
SMPD3-204ENST00000563396 BACE1P56817 501 aa17.01■□□□□ 0.31
SMPD3-204ENST00000563396 MTMR2Q13614 643 aa17.01■□□□□ 0.31
SMPD3-204ENST00000563396 SLC4A8Q2Y0W8 1093 aa17.01■□□□□ 0.31
SMPD3-204ENST00000563396 GPATCH3Q96I76 525 aa17.01■□□□□ 0.31
SMPD3-204ENST00000563396 DCP1AQ9NPI6 582 aaPredicted RBP17.01■□□□□ 0.31
SMPD3-204ENST00000563396 A0A0G2JMZ2 1700 aa17.01■□□□□ 0.31
SMPD3-204ENST00000563396 PLXNB2O15031 1838 aa17■□□□□ 0.31
SMPD3-204ENST00000563396 MBD4O95243 580 aa17■□□□□ 0.31
SMPD3-204ENST00000563396 PSMC4P43686 418 aa17■□□□□ 0.31
SMPD3-204ENST00000563396 PABPC4Q13310 644 aaKnown RBP eCLIP17■□□□□ 0.31
SMPD3-204ENST00000563396 FAM110CQ1W6H9 321 aa17■□□□□ 0.31
SMPD3-204ENST00000563396 SMCR8Q8TEV9 937 aaPredicted RBP17■□□□□ 0.31
SMPD3-204ENST00000563396 SDR42E1Q8WUS8 393 aa17■□□□□ 0.31
SMPD3-204ENST00000563396 CRBNQ96SW2 442 aa17■□□□□ 0.31
SMPD3-204ENST00000563396 SRRDQ9UH36 339 aa17■□□□□ 0.31
SMPD3-204ENST00000563396 TTC41PQ6P2S7 1318 aa16.99■□□□□ 0.31
SMPD3-204ENST00000563396 SALL3Q9BXA9 1300 aa16.99■□□□□ 0.31
SMPD3-204ENST00000563396 PARP14Q460N5 1801 aa16.99■□□□□ 0.31
SMPD3-204ENST00000563396 CHGBP05060 677 aa16.99■□□□□ 0.31
SMPD3-204ENST00000563396 OSBPP22059 807 aa16.99■□□□□ 0.31
SMPD3-204ENST00000563396 SLC9C1Q4G0N8 1177 aa16.99■□□□□ 0.31
SMPD3-204ENST00000563396 ZSCAN25Q6NSZ9 544 aa16.99■□□□□ 0.31
SMPD3-204ENST00000563396 KBTBD3Q8NAB2 608 aa16.99■□□□□ 0.31
SMPD3-204ENST00000563396 C12orf42Q96LP6 360 aa16.99■□□□□ 0.31
SMPD3-204ENST00000563396 YTHDC1Q96MU7 727 aaKnown RBP16.99■□□□□ 0.31
SMPD3-204ENST00000563396 BCL11AQ9H165 835 aa16.99■□□□□ 0.31
SMPD3-204ENST00000563396 ARMT1Q9H993 441 aa16.99■□□□□ 0.31
SMPD3-204ENST00000563396 MYPNQ86TC9 1320 aa16.98■□□□□ 0.31
SMPD3-204ENST00000563396 MKI67P46013 3256 aaKnown RBP16.98■□□□□ 0.31
SMPD3-204ENST00000563396 C19orf81C9J6K1 198 aa16.98■□□□□ 0.31
SMPD3-204ENST00000563396 USP17L10C9JJH3 530 aa16.98■□□□□ 0.31
SMPD3-204ENST00000563396 GH2P01242 217 aa16.98■□□□□ 0.31
SMPD3-204ENST00000563396 HOXA7P31268 230 aaPredicted RBP16.98■□□□□ 0.31
SMPD3-204ENST00000563396 FCGRTP55899 365 aa16.98■□□□□ 0.31
SMPD3-204ENST00000563396 SLFNL1Q499Z3 407 aa16.98■□□□□ 0.31
SMPD3-204ENST00000563396 ASCC2Q9H1I8 757 aaPredicted RBP16.98■□□□□ 0.31
SMPD3-204ENST00000563396 ATP8A2Q9NTI2 1148 aa16.98■□□□□ 0.31
SMPD3-204ENST00000563396 MCM9Q9NXL9 1143 aa16.98■□□□□ 0.31
SMPD3-204ENST00000563396 KIAA0100Q14667 2235 aaKnown RBP16.98■□□□□ 0.31
SMPD3-204ENST00000563396 DOCK3Q8IZD9 2030 aa16.97■□□□□ 0.31
SMPD3-204ENST00000563396 PDE4DIPQ5VU43 2346 aa16.97■□□□□ 0.31
SMPD3-204ENST00000563396 GCLCP48506 637 aaPredicted RBP16.97■□□□□ 0.31
SMPD3-204ENST00000563396 EVX2Q03828 476 aa16.97■□□□□ 0.31
SMPD3-204ENST00000563396 AAMPQ13685 434 aa16.97■□□□□ 0.31
SMPD3-204ENST00000563396 PPP4R3CPQ6ZMV5 832 aa16.97■□□□□ 0.31
SMPD3-204ENST00000563396 PI4K2BQ8TCG2 481 aa16.97■□□□□ 0.31
SMPD3-204ENST00000563396 RLFQ13129 1914 aa16.97■□□□□ 0.31
SMPD3-204ENST00000563396 POTEFA5A3E0 1075 aa16.96■□□□□ 0.31
SMPD3-204ENST00000563396 FMNL1O95466 1100 aaPredicted RBP16.96■□□□□ 0.31
SMPD3-204ENST00000563396 POLR3DP05423 398 aaPredicted RBP16.96■□□□□ 0.31
SMPD3-204ENST00000563396 HOXD10P28358 340 aa16.96■□□□□ 0.31
SMPD3-204ENST00000563396 PRKCZQ05513 592 aa16.96■□□□□ 0.31
SMPD3-204ENST00000563396 HDAC1Q13547 482 aaPredicted RBP16.96■□□□□ 0.31
SMPD3-204ENST00000563396 ABCB5Q2M3G0 1257 aa16.96■□□□□ 0.31
SMPD3-204ENST00000563396 CERKLQ49MI3 558 aaPredicted RBP16.96■□□□□ 0.31
SMPD3-204ENST00000563396 TSHZ3Q63HK5 1081 aa16.96■□□□□ 0.31
SMPD3-204ENST00000563396 NBPF11Q86T75 865 aa16.96■□□□□ 0.31
SMPD3-204ENST00000563396 PUS7LQ9H0K6 701 aaKnown RBP16.96■□□□□ 0.31
SMPD3-204ENST00000563396 TMOD4Q9NZQ9 345 aa16.96■□□□□ 0.31
SMPD3-204ENST00000563396 MORF4L1Q9UBU8 362 aa16.96■□□□□ 0.31
SMPD3-204ENST00000563396 SWAP70Q9UH65 585 aa16.96■□□□□ 0.31
SMPD3-204ENST00000563396 ROBO3Q96MS0 1386 aa16.95■□□□□ 0.3
SMPD3-204ENST00000563396 PRKAB2O43741 272 aa16.95■□□□□ 0.3
SMPD3-204ENST00000563396 GUCY1A2P33402 732 aa16.95■□□□□ 0.3
SMPD3-204ENST00000563396 ANKRD13CQ8N6S4 541 aa16.95■□□□□ 0.3
SMPD3-204ENST00000563396 KIAA1683Q9H0B3 1180 aa16.95■□□□□ 0.3
SMPD3-204ENST00000563396 EMILIN3Q9NT22 766 aa16.95■□□□□ 0.3
SMPD3-204ENST00000563396 CYP2D6P10635 497 aa16.94■□□□□ 0.3
SMPD3-204ENST00000563396 IRX3P78415 501 aaPredicted RBP16.94■□□□□ 0.3
SMPD3-204ENST00000563396 IRF5Q13568 498 aa16.94■□□□□ 0.3
SMPD3-204ENST00000563396 USP17L2Q6R6M4 530 aa16.94■□□□□ 0.3
SMPD3-204ENST00000563396 SH3TC2Q8TF17 1288 aa16.94■□□□□ 0.3
SMPD3-204ENST00000563396 APPBP2Q92624 585 aa16.94■□□□□ 0.3
SMPD3-204ENST00000563396 ZNF236Q9UL36 1845 aa16.93■□□□□ 0.3
SMPD3-204ENST00000563396 ERC2O15083 957 aa16.93■□□□□ 0.3
SMPD3-204ENST00000563396 GLRX3O76003 335 aaKnown RBP16.93■□□□□ 0.3
SMPD3-204ENST00000563396 ZFYP08048 801 aaPredicted RBP16.93■□□□□ 0.3
SMPD3-204ENST00000563396 MX1P20591 662 aa16.93■□□□□ 0.3
SMPD3-204ENST00000563396 HERVK_113P62684 666 aa16.93■□□□□ 0.3
SMPD3-204ENST00000563396 C12orf60Q5U649 245 aa16.93■□□□□ 0.3
SMPD3-204ENST00000563396 SLC44A5Q8NCS7 719 aa16.93■□□□□ 0.3
SMPD3-204ENST00000563396 SLAIN1Q8ND83 568 aa16.93■□□□□ 0.3
SMPD3-204ENST00000563396 OTUD7AQ8TE49 926 aaPredicted RBP16.93■□□□□ 0.3
SMPD3-204ENST00000563396 GTF3C2Q8WUA4 911 aaPredicted RBP16.93■□□□□ 0.3
SMPD3-204ENST00000563396 GCC1Q96CN9 775 aa16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms