RNA–Protein interactions for RNA: ENST00000563220.1

COMMD4-208, Transcript of COMM domain containing 4, humanhuman

TSL 2

Gene COMMD4, Length 1,897 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-208ENST00000563220 RCAN1P53805 252 aa21.07■□□□□ 0.96
COMMD4-208ENST00000563220 RCSD1Q6JBY9 416 aa21.07■□□□□ 0.96
COMMD4-208ENST00000563220 FANCBQ8NB91 859 aa21.07■□□□□ 0.96
COMMD4-208ENST00000563220 NUP133Q8WUM0 1156 aa21.07■□□□□ 0.96
COMMD4-208ENST00000563220 KIF3AQ9Y496 699 aa21.07■□□□□ 0.96
COMMD4-208ENST00000563220 BRCA1P38398 1863 aaKnown RBP21.07■□□□□ 0.96
COMMD4-208ENST00000563220 H3BQV1 296 aa21.07■□□□□ 0.96
COMMD4-208ENST00000563220 PRPF40AO75400 957 aaKnown RBP21.07■□□□□ 0.96
COMMD4-208ENST00000563220 GABPAQ06546 454 aa21.07■□□□□ 0.96
COMMD4-208ENST00000563220 RTN1Q16799 776 aa21.07■□□□□ 0.96
COMMD4-208ENST00000563220 IFFO2Q5TF58 517 aa21.07■□□□□ 0.96
COMMD4-208ENST00000563220 TTC6Q86TZ1 520 aa21.07■□□□□ 0.96
COMMD4-208ENST00000563220 PHKBQ93100 1093 aa21.07■□□□□ 0.96
COMMD4-208ENST00000563220 PRMT6Q96LA8 375 aaPredicted RBP21.07■□□□□ 0.96
COMMD4-208ENST00000563220 MYO3BQ8WXR4 1341 aa21.06■□□□□ 0.96
COMMD4-208ENST00000563220 CXCL9Q07325 125 aa21.06■□□□□ 0.96
COMMD4-208ENST00000563220 CPLX2Q6PUV4 134 aaKnown RBP21.06■□□□□ 0.96
COMMD4-208ENST00000563220 ZNF287Q9HBT7 754 aa21.06■□□□□ 0.96
COMMD4-208ENST00000563220 ATP6V1DQ9Y5K8 247 aa21.06■□□□□ 0.96
COMMD4-208ENST00000563220 CDKL5O76039 1030 aa21.05■□□□□ 0.96
COMMD4-208ENST00000563220 TSPY3P0CV98 308 aa21.05■□□□□ 0.96
COMMD4-208ENST00000563220 TSPY8P0CW00 308 aa21.05■□□□□ 0.96
COMMD4-208ENST00000563220 PTMSP20962 102 aa21.05■□□□□ 0.96
COMMD4-208ENST00000563220 TROAPQ12815 778 aa21.05■□□□□ 0.96
COMMD4-208ENST00000563220 CATIPQ7Z7H3 387 aa21.05■□□□□ 0.96
COMMD4-208ENST00000563220 IDI2Q9BXS1 227 aa21.05■□□□□ 0.96
COMMD4-208ENST00000563220 GDPD2Q9HCC8 539 aa21.05■□□□□ 0.96
COMMD4-208ENST00000563220 TCP11L1Q9NUJ3 509 aa21.05■□□□□ 0.96
COMMD4-208ENST00000563220 FAM198AQ9UFP1 575 aa21.05■□□□□ 0.96
COMMD4-208ENST00000563220 FAM173BQ6P4H8 233 aa21.05■□□□□ 0.96
COMMD4-208ENST00000563220 TDRD3Q9H7E2 651 aaKnown RBP21.05■□□□□ 0.96
COMMD4-208ENST00000563220 SPON1Q9HCB6 807 aa21.05■□□□□ 0.96
COMMD4-208ENST00000563220 IFNAR1P17181 557 aa21.04■□□□□ 0.96
COMMD4-208ENST00000563220 GUCY1B3Q02153 619 aa21.04■□□□□ 0.96
COMMD4-208ENST00000563220 DNM1Q05193 864 aaKnown RBP21.04■□□□□ 0.96
COMMD4-208ENST00000563220 RESTQ13127 1097 aa21.04■□□□□ 0.96
COMMD4-208ENST00000563220 OTUD7BQ6GQQ9 843 aa21.04■□□□□ 0.96
COMMD4-208ENST00000563220 DGKHQ86XP1 1220 aa21.04■□□□□ 0.96
COMMD4-208ENST00000563220 CMTR1Q8N1G2 835 aaKnown RBP21.04■□□□□ 0.96
COMMD4-208ENST00000563220 ANKS1AQ92625 1134 aa21.04■□□□□ 0.96
COMMD4-208ENST00000563220 CNPY2Q9Y2B0 182 aa21.04■□□□□ 0.96
COMMD4-208ENST00000563220 FOCADQ5VW36 1801 aa21.04■□□□□ 0.96
COMMD4-208ENST00000563220 TCP10Q12799 353 aa21.03■□□□□ 0.96
COMMD4-208ENST00000563220 JDP2Q8WYK2 163 aa21.03■□□□□ 0.96
COMMD4-208ENST00000563220 AIFM3Q96NN9 605 aa21.03■□□□□ 0.96
COMMD4-208ENST00000563220 GJB4Q9NTQ9 266 aa21.03■□□□□ 0.96
COMMD4-208ENST00000563220 MYH1P12882 1939 aa21.03■□□□□ 0.96
COMMD4-208ENST00000563220 CCDC196A0A1B0GTZ2 297 aa21.03■□□□□ 0.96
COMMD4-208ENST00000563220 UBE2Q2LH0YL09 131 aa21.03■□□□□ 0.96
COMMD4-208ENST00000563220 PRELPP51888 382 aa21.03■□□□□ 0.96
COMMD4-208ENST00000563220 RASSF7Q02833 373 aa21.03■□□□□ 0.96
COMMD4-208ENST00000563220 NBPF11Q86T75 865 aa21.03■□□□□ 0.96
COMMD4-208ENST00000563220 NEDD1Q8NHV4 660 aa21.03■□□□□ 0.96
COMMD4-208ENST00000563220 FER1L6Q2WGJ9 1857 aa21.02■□□□□ 0.96
COMMD4-208ENST00000563220 DDAH1O94760 285 aa21.02■□□□□ 0.96
COMMD4-208ENST00000563220 SLURP2P0DP57 97 aa21.02■□□□□ 0.96
COMMD4-208ENST00000563220 SSRP1Q08945 709 aaKnown RBP21.02■□□□□ 0.96
COMMD4-208ENST00000563220 PPP2R5BQ15173 497 aa21.02■□□□□ 0.96
COMMD4-208ENST00000563220 SH3BP5LQ7L8J4 393 aa21.02■□□□□ 0.96
COMMD4-208ENST00000563220 USP48Q86UV5 1035 aa21.02■□□□□ 0.96
COMMD4-208ENST00000563220 CCDC82Q8N4S0 544 aa21.02■□□□□ 0.96
COMMD4-208ENST00000563220 AGBL3Q8NEM8 1001 aa21.02■□□□□ 0.96
COMMD4-208ENST00000563220 C8orf76Q96K31 380 aa21.02■□□□□ 0.96
COMMD4-208ENST00000563220 SLC26A6Q9BXS9 759 aa21.02■□□□□ 0.96
COMMD4-208ENST00000563220 SERPINB13Q9UIV8 391 aa21.02■□□□□ 0.96
COMMD4-208ENST00000563220 PSME4Q14997 1843 aa21.01■□□□□ 0.95
COMMD4-208ENST00000563220 DDTLA6NHG4 134 aaPredicted RBP21.01■□□□□ 0.95
COMMD4-208ENST00000563220 NPM3O75607 178 aaKnown RBP21.01■□□□□ 0.95
COMMD4-208ENST00000563220 FMNL1O95466 1100 aaPredicted RBP21.01■□□□□ 0.95
COMMD4-208ENST00000563220 SKOR2Q2VWA4 1001 aaPredicted RBP21.01■□□□□ 0.95
COMMD4-208ENST00000563220 CCDC178Q5BJE1 867 aa21.01■□□□□ 0.95
COMMD4-208ENST00000563220 CIAPIN1Q6FI81 312 aa21.01■□□□□ 0.95
COMMD4-208ENST00000563220 CRACR2BQ8N4Y2 399 aaPredicted RBP21.01■□□□□ 0.95
COMMD4-208ENST00000563220 FBXO18Q8NFZ0 1043 aa21.01■□□□□ 0.95
COMMD4-208ENST00000563220 ALG1Q9BT22 464 aa21.01■□□□□ 0.95
COMMD4-208ENST00000563220 HDAC9Q9UKV0 1011 aa21.01■□□□□ 0.95
COMMD4-208ENST00000563220 LTBP3Q9NS15 1303 aa21.01■□□□□ 0.95
COMMD4-208ENST00000563220 SPDYE2BA6NHP3 402 aa21.01■□□□□ 0.95
COMMD4-208ENST00000563220 SPDYE6P0CI01 402 aa21.01■□□□□ 0.95
COMMD4-208ENST00000563220 CALM1P0DP23 149 aa21.01■□□□□ 0.95
COMMD4-208ENST00000563220 CALM2P0DP24 149 aa21.01■□□□□ 0.95
COMMD4-208ENST00000563220 CALM3P0DP25 149 aa21.01■□□□□ 0.95
COMMD4-208ENST00000563220 OGFOD1Q8N543 542 aa21.01■□□□□ 0.95
COMMD4-208ENST00000563220 ZSCAN16Q9H4T2 348 aaPredicted RBP21.01■□□□□ 0.95
COMMD4-208ENST00000563220 HLA-DOAP06340 250 aa21■□□□□ 0.95
COMMD4-208ENST00000563220 NCLP19338 710 aaKnown RBP21■□□□□ 0.95
COMMD4-208ENST00000563220 GUCY1A2P33402 732 aa21■□□□□ 0.95
COMMD4-208ENST00000563220 GNL3Q9BVP2 549 aaKnown RBP eCLIP21■□□□□ 0.95
COMMD4-208ENST00000563220 KAT14Q9H8E8 782 aa21■□□□□ 0.95
COMMD4-208ENST00000563220 STK36Q9NRP7 1315 aa21■□□□□ 0.95
COMMD4-208ENST00000563220 SHMT1P34896 483 aa20.99■□□□□ 0.95
COMMD4-208ENST00000563220 FUT2Q10981 343 aa20.99■□□□□ 0.95
COMMD4-208ENST00000563220 DLGAP5Q15398 846 aa20.99■□□□□ 0.95
COMMD4-208ENST00000563220 TMEM87AQ8NBN3 555 aa20.99■□□□□ 0.95
COMMD4-208ENST00000563220 DHX36Q9H2U1 1008 aaKnown RBP20.99■□□□□ 0.95
COMMD4-208ENST00000563220 SWAP70Q9UH65 585 aa20.99■□□□□ 0.95
COMMD4-208ENST00000563220 DDX49Q9Y6V7 483 aaKnown RBP20.99■□□□□ 0.95
COMMD4-208ENST00000563220 PLEKHA8P1O95397 391 aa20.98■□□□□ 0.95
COMMD4-208ENST00000563220 AKR1B1P15121 316 aa20.98■□□□□ 0.95
COMMD4-208ENST00000563220 PNMA1Q8ND90 353 aa20.98■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms