RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 STYK1Q6J9G0 422 aa10.57□□□□□ -0.72
VPS39-205ENST00000562258 GPKOWQ92917 476 aaPredicted RBP eCLIP10.57□□□□□ -0.72
VPS39-205ENST00000562258 B4DLN1 442 aa10.57□□□□□ -0.72
VPS39-205ENST00000562258 SERPINC1P01008 464 aa10.57□□□□□ -0.72
VPS39-205ENST00000562258 CDK8P49336 464 aa10.57□□□□□ -0.72
VPS39-205ENST00000562258 UBXN2AP68543 259 aa10.57□□□□□ -0.72
VPS39-205ENST00000562258 EEPD1Q7L9B9 569 aa10.57□□□□□ -0.72
VPS39-205ENST00000562258 DIS3L2Q8IYB7 885 aaKnown RBP10.57□□□□□ -0.72
VPS39-205ENST00000562258 CCDC17Q96LX7 622 aa10.57□□□□□ -0.72
VPS39-205ENST00000562258 TCHPQ9BT92 498 aa10.57□□□□□ -0.72
VPS39-205ENST00000562258 ZSWIM5Q9P217 1185 aa10.57□□□□□ -0.72
VPS39-205ENST00000562258 CIZ1Q9ULV3 898 aaPredicted RBP10.57□□□□□ -0.72
VPS39-205ENST00000562258 PLA2G12BQ9BX93 195 aa10.57□□□□□ -0.72
VPS39-205ENST00000562258 DHX36Q9H2U1 1008 aaKnown RBP10.57□□□□□ -0.72
VPS39-205ENST00000562258 RBM27Q9P2N5 1060 aaKnown RBP10.57□□□□□ -0.72
VPS39-205ENST00000562258 NOD1Q9Y239 953 aa10.57□□□□□ -0.72
VPS39-205ENST00000562258 CXCL9Q07325 125 aa10.56□□□□□ -0.72
VPS39-205ENST00000562258 SEPT2Q15019 361 aa10.56□□□□□ -0.72
VPS39-205ENST00000562258 STRIP1Q5VSL9 837 aa10.56□□□□□ -0.72
VPS39-205ENST00000562258 FANCBQ8NB91 859 aa10.56□□□□□ -0.72
VPS39-205ENST00000562258 CNPY2Q9Y2B0 182 aa10.56□□□□□ -0.72
VPS39-205ENST00000562258 TESPA1A2RU30 521 aaPredicted RBP10.56□□□□□ -0.72
VPS39-205ENST00000562258 ZSCAN22P10073 491 aaPredicted RBP10.56□□□□□ -0.72
VPS39-205ENST00000562258 SYT1P21579 422 aa10.56□□□□□ -0.72
VPS39-205ENST00000562258 KRT2P35908 639 aa10.56□□□□□ -0.72
VPS39-205ENST00000562258 MAP4K1Q92918 833 aa10.56□□□□□ -0.72
VPS39-205ENST00000562258 KANSL2Q9H9L4 492 aa10.56□□□□□ -0.72
VPS39-205ENST00000562258 ABCC12Q96J65 1359 aa10.56□□□□□ -0.72
VPS39-205ENST00000562258 PNPLA7Q6ZV29 1317 aa10.56□□□□□ -0.72
VPS39-205ENST00000562258 TXKP42681 527 aa10.56□□□□□ -0.72
VPS39-205ENST00000562258 GSE1Q14687 1217 aa10.56□□□□□ -0.72
VPS39-205ENST00000562258 CT47A1Q5JQC4 288 aaPredicted RBP10.56□□□□□ -0.72
VPS39-205ENST00000562258 RBM28Q9NW13 759 aaKnown RBP10.56□□□□□ -0.72
VPS39-205ENST00000562258 SYCE3A1L190 88 aa10.55□□□□□ -0.72
VPS39-205ENST00000562258 TGFB2P61812 414 aa10.55□□□□□ -0.72
VPS39-205ENST00000562258 HSP90AA4PQ58FG1 418 aa10.55□□□□□ -0.72
VPS39-205ENST00000562258 MAEAQ7L5Y9 396 aa10.55□□□□□ -0.72
VPS39-205ENST00000562258 CLEC10AQ8IUN9 316 aa10.55□□□□□ -0.72
VPS39-205ENST00000562258 FOXP4Q8IVH2 680 aaPredicted RBP10.55□□□□□ -0.72
VPS39-205ENST00000562258 ZFP91Q96JP5 570 aaPredicted RBP10.55□□□□□ -0.72
VPS39-205ENST00000562258 DCP1AQ9NPI6 582 aaPredicted RBP10.55□□□□□ -0.72
VPS39-205ENST00000562258 DAGLAQ9Y4D2 1042 aa10.55□□□□□ -0.72
VPS39-205ENST00000562258 PCDHA1Q9Y5I3 950 aa10.55□□□□□ -0.72
VPS39-205ENST00000562258 MYO3BQ8WXR4 1341 aa10.55□□□□□ -0.72
VPS39-205ENST00000562258 VWA3AA6NCI4 1184 aa10.55□□□□□ -0.72
VPS39-205ENST00000562258 NOP56O00567 594 aaKnown RBP10.55□□□□□ -0.72
VPS39-205ENST00000562258 NMT2O60551 498 aa10.55□□□□□ -0.72
VPS39-205ENST00000562258 DEXIO95424 95 aa10.55□□□□□ -0.72
VPS39-205ENST00000562258 ASNSP08243 561 aa10.55□□□□□ -0.72
VPS39-205ENST00000562258 TOP1P11387 765 aaKnown RBP10.55□□□□□ -0.72
VPS39-205ENST00000562258 DPP9Q86TI2 863 aa10.55□□□□□ -0.72
VPS39-205ENST00000562258 CCAR2Q8N163 923 aaKnown RBP10.55□□□□□ -0.72
VPS39-205ENST00000562258 BCL2L12Q9HB09 334 aa10.55□□□□□ -0.72
VPS39-205ENST00000562258 KCNQ5Q9NR82 932 aa10.55□□□□□ -0.72
VPS39-205ENST00000562258 HACL1Q9UJ83 578 aa10.55□□□□□ -0.72
VPS39-205ENST00000562258 USP32Q8NFA0 1604 aa10.55□□□□□ -0.72
VPS39-205ENST00000562258 PDE4DIPQ5VU43 2346 aa10.55□□□□□ -0.72
VPS39-205ENST00000562258 CCDC192P0DO97 292 aa10.55□□□□□ -0.72
VPS39-205ENST00000562258 ENOX2Q16206 610 aaKnown RBP10.55□□□□□ -0.72
VPS39-205ENST00000562258 SPECC1Q5M775 1068 aa10.55□□□□□ -0.72
VPS39-205ENST00000562258 MAP1SQ66K74 1059 aaPredicted RBP10.55□□□□□ -0.72
VPS39-205ENST00000562258 SPC24Q8NBT2 197 aa10.55□□□□□ -0.72
VPS39-205ENST00000562258 UPF1Q92900 1129 aaKnown RBP eCLIP10.55□□□□□ -0.723e-10■■■■□ 20.6
VPS39-205ENST00000562258 OSBPL3Q9H4L5 887 aa10.55□□□□□ -0.72
VPS39-205ENST00000562258 CCPG1Q9ULG6 757 aa10.55□□□□□ -0.72
VPS39-205ENST00000562258 SMCO2A6NFE2 343 aa10.55□□□□□ -0.72
VPS39-205ENST00000562258 ME3Q16798 604 aa10.55□□□□□ -0.72
VPS39-205ENST00000562258 TCERG1LQ5VWI1 586 aa10.55□□□□□ -0.72
VPS39-205ENST00000562258 RSBN1LQ6PCB5 846 aaPredicted RBP10.55□□□□□ -0.72
VPS39-205ENST00000562258 SYCP3Q8IZU3 236 aa10.55□□□□□ -0.72
VPS39-205ENST00000562258 TMEM39BQ9GZU3 492 aa10.55□□□□□ -0.72
VPS39-205ENST00000562258 TTLL1O95922 423 aa10.54□□□□□ -0.72
VPS39-205ENST00000562258 GRIPAP1Q4V328 841 aa10.54□□□□□ -0.72
VPS39-205ENST00000562258 FAM47CQ5HY64 1035 aa10.54□□□□□ -0.72
VPS39-205ENST00000562258 SLC10A5Q5PT55 438 aa10.54□□□□□ -0.72
VPS39-205ENST00000562258 DHX58Q96C10 678 aa10.54□□□□□ -0.72
VPS39-205ENST00000562258 NSUN4Q96CB9 384 aaKnown RBP10.54□□□□□ -0.72
VPS39-205ENST00000562258 NUP88Q99567 741 aaPredicted RBP10.54□□□□□ -0.72
VPS39-205ENST00000562258 LSG1Q9H089 658 aaKnown RBP10.54□□□□□ -0.72
VPS39-205ENST00000562258 CCNT1O60563 726 aaKnown RBP10.54□□□□□ -0.72
VPS39-205ENST00000562258 PDIA4P13667 645 aaKnown RBP10.54□□□□□ -0.72
VPS39-205ENST00000562258 RFX5P48382 616 aaPredicted RBP10.54□□□□□ -0.72
VPS39-205ENST00000562258 KIF22Q14807 665 aa10.54□□□□□ -0.72
VPS39-205ENST00000562258 FILIP1LQ4L180 1135 aa10.54□□□□□ -0.72
VPS39-205ENST00000562258 ERMNQ8TAM6 284 aa10.54□□□□□ -0.72
VPS39-205ENST00000562258 PRMT6Q96LA8 375 aaPredicted RBP10.54□□□□□ -0.72
VPS39-205ENST00000562258 MROH7-TTC4A0A0A0MT08 1334 aa10.54□□□□□ -0.72
VPS39-205ENST00000562258 RAD51AP2Q09MP3 1159 aa10.53□□□□□ -0.72
VPS39-205ENST00000562258 PABPC4Q13310 644 aaKnown RBP eCLIP10.53□□□□□ -0.72
VPS39-205ENST00000562258 KRT79Q5XKE5 535 aa10.53□□□□□ -0.72
VPS39-205ENST00000562258 KRT40Q6A162 431 aa10.53□□□□□ -0.72
VPS39-205ENST00000562258 FBXO11Q86XK2 927 aa10.53□□□□□ -0.72
VPS39-205ENST00000562258 PROM2Q8N271 834 aa10.53□□□□□ -0.72
VPS39-205ENST00000562258 TMEM87AQ8NBN3 555 aa10.53□□□□□ -0.72
VPS39-205ENST00000562258 ZNF592Q92610 1267 aa10.53□□□□□ -0.72
VPS39-205ENST00000562258 BICD1Q96G01 975 aa10.53□□□□□ -0.72
VPS39-205ENST00000562258 SYT17Q9BSW7 474 aa10.53□□□□□ -0.72
VPS39-205ENST00000562258 DEFB129Q9H1M3 183 aa10.53□□□□□ -0.72
VPS39-205ENST00000562258 ZSCAN16Q9H4T2 348 aaPredicted RBP10.53□□□□□ -0.72
VPS39-205ENST00000562258 CA8P35219 290 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms