RNA–Protein interactions for RNA: ENST00000561673.1

CLK3-205, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 639 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-205ENST00000561673 ZNF532Q9HCE3 1301 aa12.48□□□□□ -0.41
CLK3-205ENST00000561673 TCRBV5S4A2TA0A5A2 114 aa12.48□□□□□ -0.41
CLK3-205ENST00000561673 SMARCA5O60264 1052 aaPredicted RBP12.48□□□□□ -0.41
CLK3-205ENST00000561673 MYCP01106 439 aaPredicted RBP12.48□□□□□ -0.41
CLK3-205ENST00000561673 ATP5JP18859 108 aa12.48□□□□□ -0.41
CLK3-205ENST00000561673 FCGRTP55899 365 aa12.48□□□□□ -0.41
CLK3-205ENST00000561673 BACE1P56817 501 aa12.48□□□□□ -0.41
CLK3-205ENST00000561673 MTMR2Q13614 643 aa12.48□□□□□ -0.41
CLK3-205ENST00000561673 ANKRD13CQ8N6S4 541 aa12.48□□□□□ -0.41
CLK3-205ENST00000561673 RAET1EQ8TD07 263 aa12.48□□□□□ -0.41
CLK3-205ENST00000561673 TMEM106CQ9BVX2 250 aa12.48□□□□□ -0.41
CLK3-205ENST00000561673 LRRCC1Q9C099 1032 aa12.48□□□□□ -0.41
CLK3-205ENST00000561673 GINM1Q9NU53 330 aa12.48□□□□□ -0.41
CLK3-205ENST00000561673 PAG1Q9NWQ8 432 aa12.48□□□□□ -0.41
CLK3-205ENST00000561673 PNMA3Q9UL41 463 aa12.48□□□□□ -0.41
CLK3-205ENST00000561673 MYPNQ86TC9 1320 aa12.47□□□□□ -0.41
CLK3-205ENST00000561673 SIPA1L1O43166 1804 aa12.47□□□□□ -0.41
CLK3-205ENST00000561673 PLCD1P51178 756 aa12.47□□□□□ -0.41
CLK3-205ENST00000561673 PRKCZQ05513 592 aa12.47□□□□□ -0.41
CLK3-205ENST00000561673 SLFNL1Q499Z3 407 aa12.47□□□□□ -0.41
CLK3-205ENST00000561673 TATDN1Q6P1N9 297 aa12.47□□□□□ -0.41
CLK3-205ENST00000561673 TTC6Q86TZ1 520 aa12.47□□□□□ -0.41
CLK3-205ENST00000561673 HAUS7Q99871 368 aa12.47□□□□□ -0.41
CLK3-205ENST00000561673 ASCC2Q9H1I8 757 aaPredicted RBP12.47□□□□□ -0.41
CLK3-205ENST00000561673 EHD4Q9H223 541 aa12.47□□□□□ -0.41
CLK3-205ENST00000561673 SERPINB13Q9UIV8 391 aa12.47□□□□□ -0.41
CLK3-205ENST00000561673 ZBTB21Q9ULJ3 1066 aa12.47□□□□□ -0.41
CLK3-205ENST00000561673 GABRQQ9UN88 632 aa12.47□□□□□ -0.41
CLK3-205ENST00000561673 SPDYE4A6NLX3 237 aa12.46□□□□□ -0.41
CLK3-205ENST00000561673 USP17L10C9JJH3 530 aa12.46□□□□□ -0.41
CLK3-205ENST00000561673 GH2P01242 217 aa12.46□□□□□ -0.41
CLK3-205ENST00000561673 GRK4P32298 578 aa12.46□□□□□ -0.41
CLK3-205ENST00000561673 PABPC4Q13310 644 aaKnown RBP eCLIP12.46□□□□□ -0.41
CLK3-205ENST00000561673 CRNKL1Q9BZJ0 848 aaKnown RBP12.46□□□□□ -0.41
CLK3-205ENST00000561673 DCTPP1Q9H773 170 aa12.46□□□□□ -0.41
CLK3-205ENST00000561673 TMOD4Q9NZQ9 345 aa12.46□□□□□ -0.41
CLK3-205ENST00000561673 C19orf81C9J6K1 198 aa12.45□□□□□ -0.42
CLK3-205ENST00000561673 CHGBP05060 677 aa12.45□□□□□ -0.42
CLK3-205ENST00000561673 POLR3DP05423 398 aaPredicted RBP12.45□□□□□ -0.42
CLK3-205ENST00000561673 HOXA7P31268 230 aaPredicted RBP12.45□□□□□ -0.42
CLK3-205ENST00000561673 SHMT1P34896 483 aa12.45□□□□□ -0.42
CLK3-205ENST00000561673 ADD2P35612 726 aa12.45□□□□□ -0.42
CLK3-205ENST00000561673 GCLCP48506 637 aaPredicted RBP12.45□□□□□ -0.42
CLK3-205ENST00000561673 EVX2Q03828 476 aa12.45□□□□□ -0.42
CLK3-205ENST00000561673 MTFR1Q15390 333 aa12.45□□□□□ -0.42
CLK3-205ENST00000561673 FAM110CQ1W6H9 321 aa12.45□□□□□ -0.42
CLK3-205ENST00000561673 CERKLQ49MI3 558 aaPredicted RBP12.45□□□□□ -0.42
CLK3-205ENST00000561673 LCORLQ8N3X6 602 aa12.45□□□□□ -0.42
CLK3-205ENST00000561673 SDR42E1Q8WUS8 393 aa12.45□□□□□ -0.42
CLK3-205ENST00000561673 EMILIN3Q9NT22 766 aa12.45□□□□□ -0.42
CLK3-205ENST00000561673 MCM9Q9NXL9 1143 aa12.45□□□□□ -0.42
CLK3-205ENST00000561673 FOCADQ5VW36 1801 aa12.45□□□□□ -0.42
CLK3-205ENST00000561673 PTPRFP10586 1907 aa12.45□□□□□ -0.42
CLK3-205ENST00000561673 CDK5RAP2Q96SN8 1893 aa12.44□□□□□ -0.42
CLK3-205ENST00000561673 TNPO2O14787 897 aaKnown RBP12.44□□□□□ -0.42
CLK3-205ENST00000561673 FLT3LGP49771 235 aa12.44□□□□□ -0.42
CLK3-205ENST00000561673 GABPAQ06546 454 aa12.44□□□□□ -0.42
CLK3-205ENST00000561673 RAB3GAP1Q15042 981 aa12.44□□□□□ -0.42
CLK3-205ENST00000561673 P2RX7Q99572 595 aaKnown RBP12.44□□□□□ -0.42
CLK3-205ENST00000561673 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.44□□□□□ -0.422e-6■■□□□ 11.7
CLK3-205ENST00000561673 ARMT1Q9H993 441 aa12.44□□□□□ -0.42
CLK3-205ENST00000561673 DCP1AQ9NPI6 582 aaPredicted RBP12.44□□□□□ -0.42
CLK3-205ENST00000561673 PRKAB2O43741 272 aa12.43□□□□□ -0.42
CLK3-205ENST00000561673 ADCY3O60266 1144 aa12.43□□□□□ -0.42
CLK3-205ENST00000561673 MBD4O95243 580 aa12.43□□□□□ -0.42
CLK3-205ENST00000561673 IRX3P78415 501 aaPredicted RBP12.43□□□□□ -0.42
CLK3-205ENST00000561673 ABCB5Q2M3G0 1257 aa12.43□□□□□ -0.42
CLK3-205ENST00000561673 PRPF38BQ5VTL8 546 aaKnown RBP12.43□□□□□ -0.42
CLK3-205ENST00000561673 USP17L2Q6R6M4 530 aa12.43□□□□□ -0.42
CLK3-205ENST00000561673 SLAIN1Q8ND83 568 aa12.43□□□□□ -0.42
CLK3-205ENST00000561673 COA7Q96BR5 231 aa12.43□□□□□ -0.42
CLK3-205ENST00000561673 ECHDC1Q9NTX5 307 aa12.43□□□□□ -0.42
CLK3-205ENST00000561673 BIN2Q9UBW5 565 aaPredicted RBP12.43□□□□□ -0.42
CLK3-205ENST00000561673 PCDHB15Q9Y5E8 787 aa12.43□□□□□ -0.42
CLK3-205ENST00000561673 ATAD5Q96QE3 1844 aa12.42□□□□□ -0.42
CLK3-205ENST00000561673 PEX10O60683 326 aa12.42□□□□□ -0.42
CLK3-205ENST00000561673 CYP2D6P10635 497 aa12.42□□□□□ -0.42
CLK3-205ENST00000561673 CCL5P13501 91 aa12.42□□□□□ -0.42
CLK3-205ENST00000561673 ELNP15502 786 aa12.42□□□□□ -0.42
CLK3-205ENST00000561673 GUCY1A2P33402 732 aa12.42□□□□□ -0.42
CLK3-205ENST00000561673 HERVK_113P62684 666 aa12.42□□□□□ -0.42
CLK3-205ENST00000561673 IRF5Q13568 498 aa12.42□□□□□ -0.42
CLK3-205ENST00000561673 UBE3CQ15386 1083 aa12.42□□□□□ -0.42
CLK3-205ENST00000561673 ZYXQ15942 572 aaKnown RBP12.42□□□□□ -0.42
CLK3-205ENST00000561673 ACER1Q8TDN7 264 aa12.42□□□□□ -0.42
CLK3-205ENST00000561673 PXYLP1Q8TE99 480 aa12.42□□□□□ -0.42
CLK3-205ENST00000561673 TXNRD2Q9NNW7 524 aa12.42□□□□□ -0.42
CLK3-205ENST00000561673 CABP5Q9NP86 173 aa12.42□□□□□ -0.42
CLK3-205ENST00000561673 ATP8A2Q9NTI2 1148 aa12.42□□□□□ -0.42
CLK3-205ENST00000561673 MORF4L1Q9UBU8 362 aa12.42□□□□□ -0.42
CLK3-205ENST00000561673 LOC285556D6RIA3 1793 aa12.42□□□□□ -0.42
CLK3-205ENST00000561673 KIAA0100Q14667 2235 aaKnown RBP12.41□□□□□ -0.42
CLK3-205ENST00000561673 RRP1P56182 461 aaKnown RBP12.41□□□□□ -0.42
CLK3-205ENST00000561673 UBXN2AP68543 259 aa12.41□□□□□ -0.42
CLK3-205ENST00000561673 TSHZ3Q63HK5 1081 aa12.41□□□□□ -0.42
CLK3-205ENST00000561673 ZSCAN25Q6NSZ9 544 aa12.41□□□□□ -0.42
CLK3-205ENST00000561673 POTEEQ6S8J3 1075 aa12.41□□□□□ -0.42
CLK3-205ENST00000561673 GPRC5AQ8NFJ5 357 aa12.41□□□□□ -0.42
CLK3-205ENST00000561673 C12orf42Q96LP6 360 aa12.41□□□□□ -0.42
CLK3-205ENST00000561673 PUS7LQ9H0K6 701 aaKnown RBP12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 90.6 ms