RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 TNNI3KQ59H18 835 aa17.03■□□□□ 0.32
LDLR-213ENST00000560502 CEP85Q6P2H3 762 aa17.03■□□□□ 0.32
LDLR-213ENST00000560502 ADGRA1Q86SQ6 560 aa17.03■□□□□ 0.32
LDLR-213ENST00000560502 METTL16Q86W50 562 aaKnown RBP17.03■□□□□ 0.32
LDLR-213ENST00000560502 DBNDD2Q9BQY9 259 aa17.03■□□□□ 0.32
LDLR-213ENST00000560502 XRN2Q9H0D6 950 aaKnown RBP eCLIP17.03■□□□□ 0.32
LDLR-213ENST00000560502 DHX36Q9H2U1 1008 aaKnown RBP17.03■□□□□ 0.32
LDLR-213ENST00000560502 AS3MTQ9HBK9 375 aa17.03■□□□□ 0.32
LDLR-213ENST00000560502 MORF4L1Q9UBU8 362 aa17.03■□□□□ 0.32
LDLR-213ENST00000560502 GJD2Q9UKL4 321 aa17.03■□□□□ 0.32
LDLR-213ENST00000560502 FPGT-TNNI3KV9GXZ4 949 aa17.03■□□□□ 0.32
LDLR-213ENST00000560502 MYH1P12882 1939 aa17.03■□□□□ 0.32
LDLR-213ENST00000560502 FLT1P17948 1338 aa17.02■□□□□ 0.32
LDLR-213ENST00000560502 DDX60LQ5H9U9 1706 aaKnown RBP17.02■□□□□ 0.32
LDLR-213ENST00000560502 PLCG2P16885 1265 aa17.02■□□□□ 0.32
LDLR-213ENST00000560502 JAG1P78504 1218 aa17.02■□□□□ 0.32
LDLR-213ENST00000560502 NAA16Q6N069 864 aaPredicted RBP17.02■□□□□ 0.32
LDLR-213ENST00000560502 SSH3Q8TE77 659 aa17.02■□□□□ 0.32
LDLR-213ENST00000560502 ZNF512BQ96KM6 892 aaPredicted RBP17.02■□□□□ 0.32
LDLR-213ENST00000560502 SNRKQ9NRH2 765 aa17.02■□□□□ 0.32
LDLR-213ENST00000560502 AATFQ9NY61 560 aaKnown RBP eCLIP17.02■□□□□ 0.32
LDLR-213ENST00000560502 IGSF3O75054 1194 aa17.01■□□□□ 0.31
LDLR-213ENST00000560502 TFRCP02786 760 aaKnown RBP17.01■□□□□ 0.31
LDLR-213ENST00000560502 HMGCRP04035 888 aa17.01■□□□□ 0.31
LDLR-213ENST00000560502 CYP2E1P05181 493 aaPredicted RBP17.01■□□□□ 0.31
LDLR-213ENST00000560502 ASNSP08243 561 aa17.01■□□□□ 0.31
LDLR-213ENST00000560502 BACE1P56817 501 aa17.01■□□□□ 0.31
LDLR-213ENST00000560502 MTMR2Q13614 643 aa17.01■□□□□ 0.31
LDLR-213ENST00000560502 TTC39AQ5SRH9 613 aa17.01■□□□□ 0.31
LDLR-213ENST00000560502 NOL10Q9BSC4 688 aaKnown RBP17.01■□□□□ 0.31
LDLR-213ENST00000560502 TAOK2Q9UL54 1235 aa17.01■□□□□ 0.31
LDLR-213ENST00000560502 BAG3O95817 575 aa17■□□□□ 0.31
LDLR-213ENST00000560502 HOXA7P31268 230 aaPredicted RBP17■□□□□ 0.31
LDLR-213ENST00000560502 SHROOM1Q2M3G4 852 aaPredicted RBP17■□□□□ 0.31
LDLR-213ENST00000560502 MAPKAPK5Q8IW41 473 aa17■□□□□ 0.31
LDLR-213ENST00000560502 TGFBRAP1Q8WUH2 860 aa17■□□□□ 0.31
LDLR-213ENST00000560502 C1orf115Q9H7X2 142 aa17■□□□□ 0.31
LDLR-213ENST00000560502 GINM1Q9NU53 330 aa17■□□□□ 0.31
LDLR-213ENST00000560502 A0A1W2PPC1 479 aa16.99■□□□□ 0.31
LDLR-213ENST00000560502 EVI5O60447 810 aa16.99■□□□□ 0.31
LDLR-213ENST00000560502 ATP8B2P98198 1209 aa16.99■□□□□ 0.31
LDLR-213ENST00000560502 NUCB1Q02818 461 aa16.99■□□□□ 0.31
LDLR-213ENST00000560502 CCDC158Q5M9N0 1113 aa16.99■□□□□ 0.31
LDLR-213ENST00000560502 FOXP4Q8IVH2 680 aaPredicted RBP16.99■□□□□ 0.31
LDLR-213ENST00000560502 SIRT2Q8IXJ6 389 aa16.99■□□□□ 0.31
LDLR-213ENST00000560502 ANKLE1Q8NAG6 615 aa16.99■□□□□ 0.31
LDLR-213ENST00000560502 DIS3LQ8TF46 1054 aaKnown RBP16.99■□□□□ 0.31
LDLR-213ENST00000560502 PAWRQ96IZ0 340 aaKnown RBP16.99■□□□□ 0.31
LDLR-213ENST00000560502 PIH1D3Q9NQM4 214 aaKnown RBP16.99■□□□□ 0.31
LDLR-213ENST00000560502 MNX1P50219 401 aaPredicted RBP16.98■□□□□ 0.31
LDLR-213ENST00000560502 IRX3P78415 501 aaPredicted RBP16.98■□□□□ 0.31
LDLR-213ENST00000560502 TRIM32Q13049 653 aa16.98■□□□□ 0.31
LDLR-213ENST00000560502 TRIB2Q92519 343 aa16.98■□□□□ 0.31
LDLR-213ENST00000560502 DCTPP1Q9H773 170 aa16.98■□□□□ 0.31
LDLR-213ENST00000560502 TXNRD2Q9NNW7 524 aa16.98■□□□□ 0.31
LDLR-213ENST00000560502 TMOD4Q9NZQ9 345 aa16.98■□□□□ 0.31
LDLR-213ENST00000560502 DBNLQ9UJU6 430 aaKnown RBP16.98■□□□□ 0.31
LDLR-213ENST00000560502 PALD1Q9ULE6 856 aa16.98■□□□□ 0.31
LDLR-213ENST00000560502 ZBTB21Q9ULJ3 1066 aa16.98■□□□□ 0.31
LDLR-213ENST00000560502 NOP58Q9Y2X3 529 aaKnown RBP16.98■□□□□ 0.31
LDLR-213ENST00000560502 RPTORQ8N122 1335 aa16.97■□□□□ 0.31
LDLR-213ENST00000560502 C19orf81C9J6K1 198 aa16.97■□□□□ 0.31
LDLR-213ENST00000560502 GDF11O95390 407 aa16.97■□□□□ 0.31
LDLR-213ENST00000560502 ZAP70P43403 619 aa16.97■□□□□ 0.31
LDLR-213ENST00000560502 HERVK_113P62684 666 aa16.97■□□□□ 0.31
LDLR-213ENST00000560502 MAP3K21Q5TCX8 1036 aa16.97■□□□□ 0.31
LDLR-213ENST00000560502 NECAB2Q7Z6G3 386 aa16.97■□□□□ 0.31
LDLR-213ENST00000560502 P2RX7Q99572 595 aaKnown RBP16.97■□□□□ 0.31
LDLR-213ENST00000560502 FRMPD3Q5JV73 1810 aa16.97■□□□□ 0.31
LDLR-213ENST00000560502 USP17L10C9JJH3 530 aa16.96■□□□□ 0.31
LDLR-213ENST00000560502 PEX10O60683 326 aa16.96■□□□□ 0.31
LDLR-213ENST00000560502 SURF6O75683 361 aaKnown RBP16.96■□□□□ 0.31
LDLR-213ENST00000560502 OS9Q13438 667 aaPredicted RBP16.96■□□□□ 0.31
LDLR-213ENST00000560502 POTEEQ6S8J3 1075 aa16.96■□□□□ 0.31
LDLR-213ENST00000560502 CRACR2BQ8N4Y2 399 aaPredicted RBP16.96■□□□□ 0.31
LDLR-213ENST00000560502 HMX1Q9NP08 348 aaPredicted RBP16.96■□□□□ 0.31
LDLR-213ENST00000560502 TLR7Q9NYK1 1049 aaKnown RBP16.96■□□□□ 0.31
LDLR-213ENST00000560502 RBPJLQ9UBG7 517 aa16.96■□□□□ 0.31
LDLR-213ENST00000560502 XRCC5P13010 732 aaKnown RBP16.95■□□□□ 0.3
LDLR-213ENST00000560502 DYNLL1P63167 89 aaKnown RBP16.95■□□□□ 0.3
LDLR-213ENST00000560502 CHD1LQ86WJ1 897 aa16.95■□□□□ 0.3
LDLR-213ENST00000560502 GPRC5AQ8NFJ5 357 aa16.95■□□□□ 0.3
LDLR-213ENST00000560502 SOCS4Q8WXH5 440 aa16.95■□□□□ 0.3
LDLR-213ENST00000560502 USP6NLQ92738 828 aa16.95■□□□□ 0.3
LDLR-213ENST00000560502 ZBTB47Q9UFB7 747 aaPredicted RBP16.95■□□□□ 0.3
LDLR-213ENST00000560502 SAP30BPQ9UHR5 308 aaKnown RBP16.95■□□□□ 0.3
LDLR-213ENST00000560502 OGDHLQ9ULD0 1010 aa16.95■□□□□ 0.3
LDLR-213ENST00000560502 NAV1Q8NEY1 1877 aa16.95■□□□□ 0.3
LDLR-213ENST00000560502 HLA-DOAP06340 250 aa16.94■□□□□ 0.3
LDLR-213ENST00000560502 CYP2B6P20813 491 aa16.94■□□□□ 0.3
LDLR-213ENST00000560502 CYP7A1P22680 504 aa16.94■□□□□ 0.3
LDLR-213ENST00000560502 GTF3C2Q8WUA4 911 aaPredicted RBP16.94■□□□□ 0.3
LDLR-213ENST00000560502 EAF2Q96CJ1 260 aaPredicted RBP16.94■□□□□ 0.3
LDLR-213ENST00000560502 TRIM34Q9BYJ4 488 aa16.94■□□□□ 0.3
LDLR-213ENST00000560502 EMILIN3Q9NT22 766 aa16.94■□□□□ 0.3
LDLR-213ENST00000560502 SOX1O00570 391 aaPredicted RBP16.93■□□□□ 0.3
LDLR-213ENST00000560502 PRKAR2AP13861 404 aaKnown RBP16.93■□□□□ 0.3
LDLR-213ENST00000560502 MAPK4P31152 587 aa16.93■□□□□ 0.3
LDLR-213ENST00000560502 ERVK-9P63128 1117 aa16.93■□□□□ 0.3
LDLR-213ENST00000560502 ERVK-24P63145 666 aa16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms