RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 CYP2D6P10635 497 aa21.55■■□□□ 1.04
HDDC3-205ENST00000559898 SH3D19Q5HYK7 790 aa21.55■■□□□ 1.04
HDDC3-205ENST00000559898 PPIL4Q8WUA2 492 aaKnown RBP eCLIP21.55■■□□□ 1.04
HDDC3-205ENST00000559898 SDR42E1Q8WUS8 393 aa21.55■■□□□ 1.04
HDDC3-205ENST00000559898 PRKAB2O43741 272 aa21.54■■□□□ 1.04
HDDC3-205ENST00000559898 ARHGEF6Q15052 776 aa21.54■■□□□ 1.04
HDDC3-205ENST00000559898 TSHZ3Q63HK5 1081 aa21.54■■□□□ 1.04
HDDC3-205ENST00000559898 PROCA1Q8NCQ7 364 aaPredicted RBP21.54■■□□□ 1.04
HDDC3-205ENST00000559898 WDR18Q9BV38 432 aa21.54■■□□□ 1.04
HDDC3-205ENST00000559898 ARMT1Q9H993 441 aa21.54■■□□□ 1.04
HDDC3-205ENST00000559898 IGSF3O75054 1194 aa21.53■■□□□ 1.04
HDDC3-205ENST00000559898 GH2P01242 217 aa21.53■■□□□ 1.04
HDDC3-205ENST00000559898 HLA-DOAP06340 250 aa21.53■■□□□ 1.04
HDDC3-205ENST00000559898 ATP5JP18859 108 aa21.53■■□□□ 1.04
HDDC3-205ENST00000559898 POTEEQ6S8J3 1075 aa21.53■■□□□ 1.04
HDDC3-205ENST00000559898 SMCR8Q8TEV9 937 aaPredicted RBP21.53■■□□□ 1.04
HDDC3-205ENST00000559898 ASCC2Q9H1I8 757 aaPredicted RBP21.53■■□□□ 1.04
HDDC3-205ENST00000559898 PAG1Q9NWQ8 432 aa21.53■■□□□ 1.04
HDDC3-205ENST00000559898 PCDHB15Q9Y5E8 787 aa21.53■■□□□ 1.04
HDDC3-205ENST00000559898 PLXNB2O15031 1838 aa21.52■■□□□ 1.04
HDDC3-205ENST00000559898 ASNSP08243 561 aa21.52■■□□□ 1.04
HDDC3-205ENST00000559898 SHMT1P34896 483 aa21.52■■□□□ 1.04
HDDC3-205ENST00000559898 FCGRTP55899 365 aa21.52■■□□□ 1.04
HDDC3-205ENST00000559898 BACE1P56817 501 aa21.52■■□□□ 1.04
HDDC3-205ENST00000559898 TTF1Q15361 905 aaPredicted RBP21.52■■□□□ 1.04
HDDC3-205ENST00000559898 TATDN1Q6P1N9 297 aa21.52■■□□□ 1.04
HDDC3-205ENST00000559898 HAUS7Q99871 368 aa21.52■■□□□ 1.04
HDDC3-205ENST00000559898 TRIM34Q9BYJ4 488 aa21.52■■□□□ 1.04
HDDC3-205ENST00000559898 LRRCC1Q9C099 1032 aa21.52■■□□□ 1.04
HDDC3-205ENST00000559898 GNRH1P01148 92 aa21.51■■□□□ 1.03
HDDC3-205ENST00000559898 GUCY1A2P33402 732 aa21.51■■□□□ 1.03
HDDC3-205ENST00000559898 ADD2P35612 726 aa21.51■■□□□ 1.03
HDDC3-205ENST00000559898 RAET1EQ8TD07 263 aa21.51■■□□□ 1.03
HDDC3-205ENST00000559898 AS3MTQ9HBK9 375 aa21.51■■□□□ 1.03
HDDC3-205ENST00000559898 EMILIN3Q9NT22 766 aa21.51■■□□□ 1.03
HDDC3-205ENST00000559898 ELNP15502 786 aa21.5■■□□□ 1.03
HDDC3-205ENST00000559898 GRK4P32298 578 aa21.5■■□□□ 1.03
HDDC3-205ENST00000559898 ZYXQ15942 572 aaKnown RBP21.5■■□□□ 1.03
HDDC3-205ENST00000559898 NBPF11Q86T75 865 aa21.5■■□□□ 1.03
HDDC3-205ENST00000559898 SLC44A5Q8NCS7 719 aa21.5■■□□□ 1.03
HDDC3-205ENST00000559898 ACER1Q8TDN7 264 aa21.5■■□□□ 1.03
HDDC3-205ENST00000559898 SHISA4Q96DD7 197 aa21.5■■□□□ 1.03
HDDC3-205ENST00000559898 P2RX7Q99572 595 aaKnown RBP21.5■■□□□ 1.03
HDDC3-205ENST00000559898 TXNRD2Q9NNW7 524 aa21.5■■□□□ 1.03
HDDC3-205ENST00000559898 SERPINB13Q9UIV8 391 aa21.5■■□□□ 1.03
HDDC3-205ENST00000559898 CYP2D7A0A087X1C5 515 aa21.49■■□□□ 1.03
HDDC3-205ENST00000559898 MBD4O95243 580 aa21.49■■□□□ 1.03
HDDC3-205ENST00000559898 FLT3LGP49771 235 aa21.49■■□□□ 1.03
HDDC3-205ENST00000559898 PRMT2P55345 433 aa21.49■■□□□ 1.03
HDDC3-205ENST00000559898 GABPAQ06546 454 aa21.49■■□□□ 1.03
HDDC3-205ENST00000559898 DYNLL2Q96FJ2 89 aa21.49■■□□□ 1.03
HDDC3-205ENST00000559898 YTHDC1Q96MU7 727 aaKnown RBP21.49■■□□□ 1.03
HDDC3-205ENST00000559898 TMEM106CQ9BVX2 250 aa21.49■■□□□ 1.03
HDDC3-205ENST00000559898 TBC1D2Q9BYX2 928 aa21.49■■□□□ 1.03
HDDC3-205ENST00000559898 EHD4Q9H223 541 aa21.49■■□□□ 1.03
HDDC3-205ENST00000559898 CHMP4BQ9H444 224 aaKnown RBP21.49■■□□□ 1.03
HDDC3-205ENST00000559898 DCTPP1Q9H773 170 aa21.49■■□□□ 1.03
HDDC3-205ENST00000559898 DCP1AQ9NPI6 582 aaPredicted RBP21.49■■□□□ 1.03
HDDC3-205ENST00000559898 USP17L10C9JJH3 530 aa21.48■■□□□ 1.03
HDDC3-205ENST00000559898 TNPO2O14787 897 aaKnown RBP21.48■■□□□ 1.03
HDDC3-205ENST00000559898 MCM9Q9NXL9 1143 aa21.48■■□□□ 1.03
HDDC3-205ENST00000559898 POLR3DP05423 398 aaPredicted RBP21.47■■□□□ 1.03
HDDC3-205ENST00000559898 HOXD10P28358 340 aa21.47■■□□□ 1.03
HDDC3-205ENST00000559898 RAB3GAP1Q15042 981 aa21.47■■□□□ 1.03
HDDC3-205ENST00000559898 FAM110CQ1W6H9 321 aa21.47■■□□□ 1.03
HDDC3-205ENST00000559898 CERKLQ49MI3 558 aaPredicted RBP21.47■■□□□ 1.03
HDDC3-205ENST00000559898 OTUD7AQ8TE49 926 aaPredicted RBP21.47■■□□□ 1.03
HDDC3-205ENST00000559898 CRNKL1Q9BZJ0 848 aaKnown RBP21.47■■□□□ 1.03
HDDC3-205ENST00000559898 PNMA3Q9UL41 463 aa21.47■■□□□ 1.03
HDDC3-205ENST00000559898 MYH8P13535 1937 aa21.47■■□□□ 1.03
HDDC3-205ENST00000559898 CCL5P13501 91 aa21.46■■□□□ 1.03
HDDC3-205ENST00000559898 RRP1P56182 461 aaKnown RBP21.46■■□□□ 1.03
HDDC3-205ENST00000559898 ABCB5Q2M3G0 1257 aa21.46■■□□□ 1.03
HDDC3-205ENST00000559898 Q3C1V9 767 aa21.46■■□□□ 1.03
HDDC3-205ENST00000559898 TTC6Q86TZ1 520 aa21.46■■□□□ 1.03
HDDC3-205ENST00000559898 CLEC10AQ8IUN9 316 aa21.46■■□□□ 1.03
HDDC3-205ENST00000559898 PUS7LQ9H0K6 701 aaKnown RBP21.46■■□□□ 1.03
HDDC3-205ENST00000559898 UNC93B1Q9H1C4 597 aa21.46■■□□□ 1.03
HDDC3-205ENST00000559898 TMOD4Q9NZQ9 345 aa21.46■■□□□ 1.03
HDDC3-205ENST00000559898 ADCY3O60266 1144 aa21.45■■□□□ 1.02
HDDC3-205ENST00000559898 HOXA7P31268 230 aaPredicted RBP21.45■■□□□ 1.02
HDDC3-205ENST00000559898 SEPT2Q15019 361 aa21.45■■□□□ 1.02
HDDC3-205ENST00000559898 CERS3Q8IU89 383 aa21.45■■□□□ 1.02
HDDC3-205ENST00000559898 CRBNQ96SW2 442 aa21.45■■□□□ 1.02
HDDC3-205ENST00000559898 RBPJLQ9UBG7 517 aa21.45■■□□□ 1.02
HDDC3-205ENST00000559898 TAOK2Q9UL54 1235 aa21.45■■□□□ 1.02
HDDC3-205ENST00000559898 A0A1W2PRG0 241 aa21.44■■□□□ 1.02
HDDC3-205ENST00000559898 C19orf81C9J6K1 198 aa21.44■■□□□ 1.02
HDDC3-205ENST00000559898 HERVK_113P62684 666 aa21.44■■□□□ 1.02
HDDC3-205ENST00000559898 TRIM32Q13049 653 aa21.44■■□□□ 1.02
HDDC3-205ENST00000559898 PRPF38BQ5VTL8 546 aaKnown RBP21.44■■□□□ 1.02
HDDC3-205ENST00000559898 GINM1Q9NU53 330 aa21.44■■□□□ 1.02
HDDC3-205ENST00000559898 BIN2Q9UBW5 565 aaPredicted RBP21.44■■□□□ 1.02
HDDC3-205ENST00000559898 GCLCP48506 637 aaPredicted RBP21.43■■□□□ 1.02
HDDC3-205ENST00000559898 IRX3P78415 501 aaPredicted RBP21.43■■□□□ 1.02
HDDC3-205ENST00000559898 PABPC4Q13310 644 aaKnown RBP eCLIP21.43■■□□□ 1.029e-6■■■■□ 24.7
HDDC3-205ENST00000559898 KIAA1755Q5JYT7 1200 aa21.43■■□□□ 1.02
HDDC3-205ENST00000559898 TMED8Q6PL24 325 aaPredicted RBP21.43■■□□□ 1.02
HDDC3-205ENST00000559898 USP17L2Q6R6M4 530 aa21.43■■□□□ 1.02
HDDC3-205ENST00000559898 ECHDC1Q9NTX5 307 aa21.43■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms