RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 SHMT1P34896 483 aa11.37□□□□□ -0.59
CUX1-216ENST00000558469 ANAPC15P60006 121 aa11.37□□□□□ -0.59
CUX1-216ENST00000558469 DCAF15Q66K64 600 aa11.37□□□□□ -0.59
CUX1-216ENST00000558469 RALYLQ86SE5 291 aaKnown RBP11.37□□□□□ -0.59
CUX1-216ENST00000558469 ZNF444Q8N0Y2 327 aaPredicted RBP11.37□□□□□ -0.59
CUX1-216ENST00000558469 ZNF784Q8NCA9 323 aaPredicted RBP11.37□□□□□ -0.59
CUX1-216ENST00000558469 NCOA7Q8NI08 942 aa11.37□□□□□ -0.59
CUX1-216ENST00000558469 JAKMIP1Q96N16 626 aaKnown RBP11.37□□□□□ -0.59
CUX1-216ENST00000558469 KRT23Q9C075 422 aa11.37□□□□□ -0.59
CUX1-216ENST00000558469 CNNM2Q9H8M5 875 aa11.37□□□□□ -0.59
CUX1-216ENST00000558469 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.37□□□□□ -0.59
CUX1-216ENST00000558469 SSC5DA1L4H1 1573 aa11.37□□□□□ -0.59
CUX1-216ENST00000558469 GREB1LQ9C091 1923 aaPredicted RBP11.37□□□□□ -0.59
CUX1-216ENST00000558469 B4E1Z4 1266 aa11.36□□□□□ -0.59
CUX1-216ENST00000558469 ORC4O43929 436 aa11.36□□□□□ -0.59
CUX1-216ENST00000558469 RANBP6O60518 1105 aaKnown RBP11.36□□□□□ -0.59
CUX1-216ENST00000558469 KDM4AO75164 1064 aa11.36□□□□□ -0.59
CUX1-216ENST00000558469 CASTP20810 708 aaKnown RBP11.36□□□□□ -0.59
CUX1-216ENST00000558469 RASA1P20936 1047 aa11.36□□□□□ -0.59
CUX1-216ENST00000558469 PSMA5P28066 241 aa11.36□□□□□ -0.59
CUX1-216ENST00000558469 NF2P35240 595 aa11.36□□□□□ -0.59
CUX1-216ENST00000558469 MAP3K10Q02779 954 aa11.36□□□□□ -0.59
CUX1-216ENST00000558469 FMR1Q06787 632 aaKnown RBP eCLIP11.36□□□□□ -0.59
CUX1-216ENST00000558469 PRKG1Q13976 671 aa11.36□□□□□ -0.59
CUX1-216ENST00000558469 CERKLQ49MI3 558 aaPredicted RBP11.36□□□□□ -0.59
CUX1-216ENST00000558469 FAM47AQ5JRC9 791 aa11.36□□□□□ -0.59
CUX1-216ENST00000558469 TATDN1Q6P1N9 297 aa11.36□□□□□ -0.59
CUX1-216ENST00000558469 NKX2-3Q8TAU0 364 aa11.36□□□□□ -0.59
CUX1-216ENST00000558469 ESR2Q92731 530 aa11.36□□□□□ -0.59
CUX1-216ENST00000558469 NEK1Q96PY6 1258 aa11.36□□□□□ -0.59
CUX1-216ENST00000558469 TAOK2Q9UL54 1235 aa11.36□□□□□ -0.59
CUX1-216ENST00000558469 FZD1Q9UP38 647 aa11.36□□□□□ -0.59
CUX1-216ENST00000558469 PAPPA2Q9BXP8 1791 aa11.36□□□□□ -0.59
CUX1-216ENST00000558469 ITGBL1O95965 494 aaPredicted RBP11.35□□□□□ -0.59
CUX1-216ENST00000558469 TSPY3P0CV98 308 aa11.35□□□□□ -0.59
CUX1-216ENST00000558469 TSPY8P0CW00 308 aa11.35□□□□□ -0.59
CUX1-216ENST00000558469 CPA1P15085 419 aa11.35□□□□□ -0.59
CUX1-216ENST00000558469 TFAP4Q01664 338 aa11.35□□□□□ -0.59
CUX1-216ENST00000558469 COL9A3Q14050 684 aaPredicted RBP11.35□□□□□ -0.59
CUX1-216ENST00000558469 BLOC1S2Q6QNY1 142 aa11.35□□□□□ -0.59
CUX1-216ENST00000558469 CHST3Q7LGC8 479 aa11.35□□□□□ -0.59
CUX1-216ENST00000558469 IL17RAQ96F46 866 aa11.35□□□□□ -0.59
CUX1-216ENST00000558469 KIF2CQ99661 725 aa11.35□□□□□ -0.59
CUX1-216ENST00000558469 ZNF341Q9BYN7 854 aa11.35□□□□□ -0.59
CUX1-216ENST00000558469 ZNF408Q9H9D4 720 aa11.35□□□□□ -0.59
CUX1-216ENST00000558469 ZSWIM5Q9P217 1185 aa11.35□□□□□ -0.59
CUX1-216ENST00000558469 PHIPQ8WWQ0 1821 aa11.35□□□□□ -0.59
CUX1-216ENST00000558469 TSPY2A6NKD2 308 aa11.34□□□□□ -0.59
CUX1-216ENST00000558469 PHF20L1A8MW92 1017 aa11.34□□□□□ -0.59
CUX1-216ENST00000558469 MPHOSPH10O00566 681 aaKnown RBP11.34□□□□□ -0.59
CUX1-216ENST00000558469 PPP1R12BO60237 982 aaPredicted RBP11.34□□□□□ -0.59
CUX1-216ENST00000558469 USP2O75604 605 aaPredicted RBP11.34□□□□□ -0.59
CUX1-216ENST00000558469 TOMM70O94826 608 aa11.34□□□□□ -0.59
CUX1-216ENST00000558469 GDF11O95390 407 aa11.34□□□□□ -0.59
CUX1-216ENST00000558469 HMGB1P09429 215 aaKnown RBP11.34□□□□□ -0.59
CUX1-216ENST00000558469 AKR1B1P15121 316 aa11.34□□□□□ -0.59
CUX1-216ENST00000558469 MCM5P33992 734 aa11.34□□□□□ -0.59
CUX1-216ENST00000558469 TTLL12Q14166 644 aaPredicted RBP11.34□□□□□ -0.59
CUX1-216ENST00000558469 RRP1BQ14684 758 aaKnown RBP11.34□□□□□ -0.59
CUX1-216ENST00000558469 RUFY3Q7L099 469 aa11.34□□□□□ -0.59
CUX1-216ENST00000558469 CYB5R4Q7L1T6 521 aa11.34□□□□□ -0.59
CUX1-216ENST00000558469 MB21D2Q8IYB1 491 aaPredicted RBP11.34□□□□□ -0.59
CUX1-216ENST00000558469 SMC1BQ8NDV3 1235 aa11.34□□□□□ -0.59
CUX1-216ENST00000558469 ZKSCAN3Q9BRR0 538 aa11.34□□□□□ -0.59
CUX1-216ENST00000558469 UPF3BQ9BZI7 483 aaKnown RBP11.34□□□□□ -0.59
CUX1-216ENST00000558469 TM6SF1Q9BZW5 370 aa11.34□□□□□ -0.59
CUX1-216ENST00000558469 ZSWIM6Q9HCJ5 1215 aa11.34□□□□□ -0.59
CUX1-216ENST00000558469 CYP46A1Q9Y6A2 500 aa11.34□□□□□ -0.59
CUX1-216ENST00000558469 PRC1O43663 620 aa11.33□□□□□ -0.6
CUX1-216ENST00000558469 RPS6KB1P23443 525 aa11.33□□□□□ -0.6
CUX1-216ENST00000558469 CAP2P40123 477 aa11.33□□□□□ -0.6
CUX1-216ENST00000558469 ABCB5Q2M3G0 1257 aa11.33□□□□□ -0.6
CUX1-216ENST00000558469 SHROOM1Q2M3G4 852 aaPredicted RBP11.33□□□□□ -0.6
CUX1-216ENST00000558469 DHX32Q7L7V1 743 aaKnown RBP11.33□□□□□ -0.6
CUX1-216ENST00000558469 KLRG1Q96E93 195 aa11.33□□□□□ -0.6
CUX1-216ENST00000558469 CCDC17Q96LX7 622 aa11.33□□□□□ -0.6
CUX1-216ENST00000558469 TCEANC2Q96MN5 208 aa11.33□□□□□ -0.6
CUX1-216ENST00000558469 WRNIP1Q96S55 665 aa11.33□□□□□ -0.6
CUX1-216ENST00000558469 CABP5Q9NP86 173 aa11.33□□□□□ -0.6
CUX1-216ENST00000558469 ZNF112Q9UJU3 913 aa11.33□□□□□ -0.6
CUX1-216ENST00000558469 ANGEL1Q9UNK9 670 aaKnown RBP11.33□□□□□ -0.6
CUX1-216ENST00000558469 NMT2O60551 498 aa11.32□□□□□ -0.6
CUX1-216ENST00000558469 CTNND1O60716 968 aaKnown RBP11.32□□□□□ -0.6
CUX1-216ENST00000558469 CELF2O95319 508 aaKnown RBP11.32□□□□□ -0.6
CUX1-216ENST00000558469 GH2P01242 217 aa11.32□□□□□ -0.6
CUX1-216ENST00000558469 INPP5BP32019 993 aa11.32□□□□□ -0.6
CUX1-216ENST00000558469 IREB2P48200 963 aaKnown RBP11.32□□□□□ -0.6
CUX1-216ENST00000558469 NT5C2P49902 561 aa11.32□□□□□ -0.6
CUX1-216ENST00000558469 NEK4P51957 841 aa11.32□□□□□ -0.6
CUX1-216ENST00000558469 ANTXR2P58335 489 aa11.32□□□□□ -0.6
CUX1-216ENST00000558469 JAG1P78504 1218 aa11.32□□□□□ -0.6
CUX1-216ENST00000558469 EXOSC10Q01780 885 aaKnown RBP11.32□□□□□ -0.6
CUX1-216ENST00000558469 RAB3GAP1Q15042 981 aa11.32□□□□□ -0.6
CUX1-216ENST00000558469 RABEP1Q15276 862 aa11.32□□□□□ -0.6
CUX1-216ENST00000558469 MOB2Q70IA6 237 aa11.32□□□□□ -0.6
CUX1-216ENST00000558469 ARMC9Q7Z3E5 817 aa11.32□□□□□ -0.6
CUX1-216ENST00000558469 IQCA1Q86XH1 822 aa11.32□□□□□ -0.6
CUX1-216ENST00000558469 NEDD1Q8NHV4 660 aa11.32□□□□□ -0.6
CUX1-216ENST00000558469 RBM46Q8TBY0 533 aaKnown RBP11.32□□□□□ -0.6
CUX1-216ENST00000558469 ZKSCAN4Q969J2 545 aaPredicted RBP11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms