RNA–Protein interactions for RNA: ENST00000557358.1

VPS33B-206, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 4

Gene VPS33B, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-206ENST00000557358 PI4K2BQ8TCG2 481 aa16.57■□□□□ 0.24
VPS33B-206ENST00000557358 NACAP1Q9BZK3 213 aa16.57■□□□□ 0.24
VPS33B-206ENST00000557358 STAP2Q9UGK3 403 aa16.57■□□□□ 0.24
VPS33B-206ENST00000557358 ZBTB21Q9ULJ3 1066 aa16.57■□□□□ 0.24
VPS33B-206ENST00000557358 C19orf81C9J6K1 198 aa16.56■□□□□ 0.24
VPS33B-206ENST00000557358 GDF11O95390 407 aa16.56■□□□□ 0.24
VPS33B-206ENST00000557358 APPP05067 770 aa16.56■□□□□ 0.24
VPS33B-206ENST00000557358 OSBPP22059 807 aa16.56■□□□□ 0.24
VPS33B-206ENST00000557358 PDE1AP54750 535 aa16.56■□□□□ 0.24
VPS33B-206ENST00000557358 ABCB5Q2M3G0 1257 aa16.56■□□□□ 0.24
VPS33B-206ENST00000557358 OTUD7AQ8TE49 926 aaPredicted RBP16.56■□□□□ 0.24
VPS33B-206ENST00000557358 SMCR8Q8TEV9 937 aaPredicted RBP16.56■□□□□ 0.24
VPS33B-206ENST00000557358 FEZ1Q99689 392 aa16.56■□□□□ 0.24
VPS33B-206ENST00000557358 WDR18Q9BV38 432 aa16.56■□□□□ 0.24
VPS33B-206ENST00000557358 PUS7LQ9H0K6 701 aaKnown RBP16.56■□□□□ 0.24
VPS33B-206ENST00000557358 R3HDMLQ9H3Y0 253 aa16.56■□□□□ 0.24
VPS33B-206ENST00000557358 EFCC1Q9HA90 598 aa16.56■□□□□ 0.24
VPS33B-206ENST00000557358 ARPP21Q9UBL0 812 aaPredicted RBP16.56■□□□□ 0.24
VPS33B-206ENST00000557358 AGTPBP1Q9UPW5 1226 aa16.56■□□□□ 0.24
VPS33B-206ENST00000557358 TRIM17Q9Y577 477 aa16.56■□□□□ 0.24
VPS33B-206ENST00000557358 CCDC85CA6NKD9 419 aa16.55■□□□□ 0.24
VPS33B-206ENST00000557358 TRIM6-TRIM34B2RNG4 842 aa16.55■□□□□ 0.24
VPS33B-206ENST00000557358 USP17L10C9JJH3 530 aa16.55■□□□□ 0.24
VPS33B-206ENST00000557358 MPHOSPH10O00566 681 aaKnown RBP16.55■□□□□ 0.24
VPS33B-206ENST00000557358 GH2P01242 217 aa16.55■□□□□ 0.24
VPS33B-206ENST00000557358 PLCD1P51178 756 aa16.55■□□□□ 0.24
VPS33B-206ENST00000557358 IRX6P78412 446 aaPredicted RBP16.55■□□□□ 0.24
VPS33B-206ENST00000557358 RAB3GAP1Q15042 981 aa16.55■□□□□ 0.24
VPS33B-206ENST00000557358 TATDN1Q6P1N9 297 aa16.55■□□□□ 0.24
VPS33B-206ENST00000557358 GIMAP6Q6P9H5 292 aa16.55■□□□□ 0.24
VPS33B-206ENST00000557358 TICAM2Q86XR7 235 aa16.55■□□□□ 0.24
VPS33B-206ENST00000557358 DNAJC18Q9H819 358 aa16.55■□□□□ 0.24
VPS33B-206ENST00000557358 ZNF287Q9HBT7 754 aa16.55■□□□□ 0.24
VPS33B-206ENST00000557358 GPAA1O43292 621 aa16.54■□□□□ 0.24
VPS33B-206ENST00000557358 PRKAB2O43741 272 aa16.54■□□□□ 0.24
VPS33B-206ENST00000557358 TDO2P48775 406 aa16.54■□□□□ 0.24
VPS33B-206ENST00000557358 USP14P54578 494 aa16.54■□□□□ 0.24
VPS33B-206ENST00000557358 HMGCS2P54868 508 aa16.54■□□□□ 0.24
VPS33B-206ENST00000557358 BACE1P56817 501 aa16.54■□□□□ 0.24
VPS33B-206ENST00000557358 NUCB1Q02818 461 aa16.54■□□□□ 0.24
VPS33B-206ENST00000557358 FBXO46Q6PJ61 603 aaPredicted RBP16.54■□□□□ 0.24
VPS33B-206ENST00000557358 CD99L2Q8TCZ2 262 aa16.54■□□□□ 0.24
VPS33B-206ENST00000557358 STRBPQ96SI9 672 aaKnown RBP16.54■□□□□ 0.24
VPS33B-206ENST00000557358 MYH8P13535 1937 aa16.53■□□□□ 0.24
VPS33B-206ENST00000557358 BAZ2AQ9UIF9 1905 aaKnown RBP16.53■□□□□ 0.24
VPS33B-206ENST00000557358 USP17L12C9JPN9 530 aa16.53■□□□□ 0.24
VPS33B-206ENST00000557358 USP17L21D6R901 530 aa16.53■□□□□ 0.24
VPS33B-206ENST00000557358 GNRH1P01148 92 aa16.53■□□□□ 0.24
VPS33B-206ENST00000557358 IGHDP01880 384 aa16.53■□□□□ 0.24
VPS33B-206ENST00000557358 SLC3A2P08195 630 aaKnown RBP16.53■□□□□ 0.24
VPS33B-206ENST00000557358 HOXD10P28358 340 aa16.53■□□□□ 0.24
VPS33B-206ENST00000557358 IRX3P78415 501 aaPredicted RBP16.53■□□□□ 0.24
VPS33B-206ENST00000557358 MTMR2Q13614 643 aa16.53■□□□□ 0.24
VPS33B-206ENST00000557358 SLFNL1Q499Z3 407 aa16.53■□□□□ 0.24
VPS33B-206ENST00000557358 USP17L2Q6R6M4 530 aa16.53■□□□□ 0.24
VPS33B-206ENST00000557358 CCDC84Q86UT8 332 aaPredicted RBP16.53■□□□□ 0.24
VPS33B-206ENST00000557358 OSBP2Q969R2 916 aa16.53■□□□□ 0.24
VPS33B-206ENST00000557358 CCDC17Q96LX7 622 aa16.53■□□□□ 0.24
VPS33B-206ENST00000557358 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.53■□□□□ 0.24
VPS33B-206ENST00000557358 SIPA1L1O43166 1804 aa16.53■□□□□ 0.24
VPS33B-206ENST00000557358 PTPRFP10586 1907 aa16.53■□□□□ 0.24
VPS33B-206ENST00000557358 PHIPQ8WWQ0 1821 aa16.52■□□□□ 0.24
VPS33B-206ENST00000557358 SALL3Q9BXA9 1300 aa16.52■□□□□ 0.24
VPS33B-206ENST00000557358 RRP1BQ14684 758 aaKnown RBP16.52■□□□□ 0.24
VPS33B-206ENST00000557358 SH3D19Q5HYK7 790 aa16.52■□□□□ 0.24
VPS33B-206ENST00000557358 C12orf60Q5U649 245 aa16.52■□□□□ 0.24
VPS33B-206ENST00000557358 GPAT2Q6NUI2 795 aa16.52■□□□□ 0.24
VPS33B-206ENST00000557358 RILPL2Q969X0 211 aa16.52■□□□□ 0.24
VPS33B-206ENST00000557358 SH2D4AQ9H788 454 aa16.52■□□□□ 0.24
VPS33B-206ENST00000557358 CPA4Q9UI42 421 aa16.52■□□□□ 0.24
VPS33B-206ENST00000557358 SHMT1P34896 483 aa16.51■□□□□ 0.23
VPS33B-206ENST00000557358 GCLCP48506 637 aaPredicted RBP16.51■□□□□ 0.23
VPS33B-206ENST00000557358 PRMT2P55345 433 aa16.51■□□□□ 0.23
VPS33B-206ENST00000557358 GABPAQ06546 454 aa16.51■□□□□ 0.23
VPS33B-206ENST00000557358 MOGSQ13724 837 aa16.51■□□□□ 0.23
VPS33B-206ENST00000557358 TMEM179Q6ZVK1 233 aa16.51■□□□□ 0.23
VPS33B-206ENST00000557358 OTOP1Q7RTM1 612 aa16.51■□□□□ 0.23
VPS33B-206ENST00000557358 MKNK2Q9HBH9 465 aa16.51■□□□□ 0.23
VPS33B-206ENST00000557358 MINDY4BA8MYZ0 360 aa16.5■□□□□ 0.23
VPS33B-206ENST00000557358 PATL2C9JE40 543 aaKnown RBP16.5■□□□□ 0.23
VPS33B-206ENST00000557358 FMNL1O95466 1100 aaPredicted RBP16.5■□□□□ 0.23
VPS33B-206ENST00000557358 CYP2C8P10632 490 aa16.5■□□□□ 0.23
VPS33B-206ENST00000557358 CYP2D6P10635 497 aa16.5■□□□□ 0.23
VPS33B-206ENST00000557358 MFAP1P55081 439 aaKnown RBP16.5■□□□□ 0.23
VPS33B-206ENST00000557358 LACTBP83111 547 aaPredicted RBP16.5■□□□□ 0.23
VPS33B-206ENST00000557358 SBK1Q52WX2 424 aa16.5■□□□□ 0.23
VPS33B-206ENST00000557358 ZMYM1Q5SVZ6 1142 aa16.5■□□□□ 0.23
VPS33B-206ENST00000557358 CTR9Q6PD62 1173 aa16.5■□□□□ 0.23
VPS33B-206ENST00000557358 C17orf99Q6UX52 265 aa16.5■□□□□ 0.23
VPS33B-206ENST00000557358 GTF3C2Q8WUA4 911 aaPredicted RBP16.5■□□□□ 0.23
VPS33B-206ENST00000557358 NAPBQ9H115 298 aa16.5■□□□□ 0.23
VPS33B-206ENST00000557358 ARHGEF10LQ9HCE6 1279 aa16.5■□□□□ 0.23
VPS33B-206ENST00000557358 HELLSQ9NRZ9 838 aa16.5■□□□□ 0.23
VPS33B-206ENST00000557358 DDX60LQ5H9U9 1706 aaKnown RBP16.5■□□□□ 0.23
VPS33B-206ENST00000557358 HIP1O00291 1037 aa16.49■□□□□ 0.23
VPS33B-206ENST00000557358 CHGBP05060 677 aa16.49■□□□□ 0.23
VPS33B-206ENST00000557358 CDK8P49336 464 aa16.49■□□□□ 0.23
VPS33B-206ENST00000557358 FCGRTP55899 365 aa16.49■□□□□ 0.23
VPS33B-206ENST00000557358 C16orf86Q6ZW13 317 aa16.49■□□□□ 0.23
VPS33B-206ENST00000557358 NBPF11Q86T75 865 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms