RNA–Protein interactions for RNA: ENST00000556992.1

SRP54-212, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 529 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-212ENST00000556992 NBPF8Q3BBV2 869 aa6.16□□□□□ -1.42
SRP54-212ENST00000556992 SPOCD1Q6ZMY3 1216 aa6.16□□□□□ -1.42
SRP54-212ENST00000556992 ARHGAP27Q6ZUM4 889 aa6.16□□□□□ -1.42
SRP54-212ENST00000556992 ATG4DQ86TL0 474 aaPredicted RBP6.16□□□□□ -1.42
SRP54-212ENST00000556992 GLYCTKQ8IVS8 523 aa6.16□□□□□ -1.42
SRP54-212ENST00000556992 TOP6BLQ8N6T0 577 aa6.16□□□□□ -1.42
SRP54-212ENST00000556992 STK35Q8TDR2 534 aa6.16□□□□□ -1.42
SRP54-212ENST00000556992 MISP3Q96FF7 219 aa6.16□□□□□ -1.42
SRP54-212ENST00000556992 ATXN3LQ9H3M9 355 aa6.16□□□□□ -1.42
SRP54-212ENST00000556992 KANK1Q14678 1352 aa6.16□□□□□ -1.42
SRP54-212ENST00000556992 DHX29Q7Z478 1369 aaKnown RBP6.16□□□□□ -1.42
SRP54-212ENST00000556992 ERBINQ96RT1 1412 aa6.16□□□□□ -1.42
SRP54-212ENST00000556992 FANCAO15360 1455 aa6.15□□□□□ -1.42
SRP54-212ENST00000556992 TMEM238LA0A1B0GVL6 79 aa6.15□□□□□ -1.42
SRP54-212ENST00000556992 DBX1A6NMT0 343 aa6.15□□□□□ -1.42
SRP54-212ENST00000556992 KIF3BO15066 747 aa6.15□□□□□ -1.42
SRP54-212ENST00000556992 GPR182O15218 404 aa6.15□□□□□ -1.42
SRP54-212ENST00000556992 FARP2O94887 1054 aaPredicted RBP6.15□□□□□ -1.42
SRP54-212ENST00000556992 CEACAM5P06731 702 aa6.15□□□□□ -1.42
SRP54-212ENST00000556992 GSTP1P09211 210 aaKnown RBP6.15□□□□□ -1.42
SRP54-212ENST00000556992 OXCT1P55809 520 aa6.15□□□□□ -1.42
SRP54-212ENST00000556992 ARHGAP4P98171 946 aa6.15□□□□□ -1.42
SRP54-212ENST00000556992 PRKCQQ04759 706 aa6.15□□□□□ -1.42
SRP54-212ENST00000556992 GRM2Q14416 872 aa6.15□□□□□ -1.42
SRP54-212ENST00000556992 PI16Q6UXB8 463 aa6.15□□□□□ -1.42
SRP54-212ENST00000556992 KCNB2Q92953 911 aa6.15□□□□□ -1.42
SRP54-212ENST00000556992 CCDC74AQ96AQ1 378 aa6.15□□□□□ -1.42
SRP54-212ENST00000556992 DUSP23Q9BVJ7 150 aa6.15□□□□□ -1.42
SRP54-212ENST00000556992 HIRIP3Q9BW71 556 aaPredicted RBP6.15□□□□□ -1.42
SRP54-212ENST00000556992 NIF3L1Q9GZT8 377 aa6.15□□□□□ -1.42
SRP54-212ENST00000556992 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP6.15□□□□□ -1.42
SRP54-212ENST00000556992 GPN3Q9UHW5 284 aaPredicted RBP6.15□□□□□ -1.42
SRP54-212ENST00000556992 RBAK-RBAKDNI3L0D1 243 aa6.14□□□□□ -1.43
SRP54-212ENST00000556992 ANP32CO43423 234 aa6.14□□□□□ -1.43
SRP54-212ENST00000556992 SLFN14P0C7P3 912 aa6.14□□□□□ -1.43
SRP54-212ENST00000556992 IFI16Q16666 785 aaKnown RBP6.14□□□□□ -1.43
SRP54-212ENST00000556992 KIF4BQ2VIQ3 1234 aa6.14□□□□□ -1.43
SRP54-212ENST00000556992 KSR1Q8IVT5 923 aa6.14□□□□□ -1.43
SRP54-212ENST00000556992 EPS8L3Q8TE67 593 aaKnown RBP6.14□□□□□ -1.43
SRP54-212ENST00000556992 ISL2Q96A47 359 aa6.14□□□□□ -1.43
SRP54-212ENST00000556992 HRASLS5Q96KN8 279 aa6.14□□□□□ -1.43
SRP54-212ENST00000556992 C1orf115Q9H7X2 142 aa6.14□□□□□ -1.43
SRP54-212ENST00000556992 VAV3Q9UKW4 847 aa6.14□□□□□ -1.43
SRP54-212ENST00000556992 DUOX2Q9NRD8 1548 aa6.14□□□□□ -1.43
SRP54-212ENST00000556992 SAMD9LQ8IVG5 1584 aa6.14□□□□□ -1.43
SRP54-212ENST00000556992 EIF1AYO14602 144 aaKnown RBP6.13□□□□□ -1.43
SRP54-212ENST00000556992 FCGRTP55899 365 aa6.13□□□□□ -1.43
SRP54-212ENST00000556992 ZNF326Q5BKZ1 582 aaKnown RBP6.13□□□□□ -1.43
SRP54-212ENST00000556992 MPRIPQ6WCQ1 1025 aa6.13□□□□□ -1.43
SRP54-212ENST00000556992 FAM129BQ96TA1 746 aa6.13□□□□□ -1.43
SRP54-212ENST00000556992 SSU72Q9NP77 194 aaKnown RBP6.13□□□□□ -1.43
SRP54-212ENST00000556992 ARID4BQ4LE39 1312 aaPredicted RBP6.13□□□□□ -1.43
SRP54-212ENST00000556992 SYCP2Q9BX26 1530 aa6.13□□□□□ -1.43
SRP54-212ENST00000556992 TTC37Q6PGP7 1564 aa6.13□□□□□ -1.43
SRP54-212ENST00000556992 MAST1Q9Y2H9 1570 aa6.13□□□□□ -1.43
SRP54-212ENST00000556992 ZCCHC11Q5TAX3 1644 aaKnown RBP6.13□□□□□ -1.43
SRP54-212ENST00000556992 CCDC144AA2RUR9 1427 aa6.12□□□□□ -1.43
SRP54-212ENST00000556992 CCER2I3L3R5 266 aa6.12□□□□□ -1.43
SRP54-212ENST00000556992 NDUFB5O43674 189 aa6.12□□□□□ -1.43
SRP54-212ENST00000556992 PKN1Q16512 942 aa6.12□□□□□ -1.43
SRP54-212ENST00000556992 RGL3Q3MIN7 710 aa6.12□□□□□ -1.43
SRP54-212ENST00000556992 FBLN7Q53RD9 439 aa6.12□□□□□ -1.43
SRP54-212ENST00000556992 PRPF40BQ6NWY9 871 aaKnown RBP6.12□□□□□ -1.43
SRP54-212ENST00000556992 PREX2Q70Z35 1606 aa6.12□□□□□ -1.43
SRP54-212ENST00000556992 UBE3DQ7Z6J8 389 aa6.12□□□□□ -1.43
SRP54-212ENST00000556992 PDZD3Q86UT5 571 aa6.12□□□□□ -1.43
SRP54-212ENST00000556992 GCC2Q8IWJ2 1684 aa6.12□□□□□ -1.43
SRP54-212ENST00000556992 TMC1Q8TDI8 760 aa6.12□□□□□ -1.43
SRP54-212ENST00000556992 HEXIM2Q96MH2 286 aaKnown RBP6.12□□□□□ -1.43
SRP54-212ENST00000556992 SYNGAP1Q96PV0 1343 aa6.12□□□□□ -1.43
SRP54-212ENST00000556992 CARD11Q9BXL7 1154 aa6.12□□□□□ -1.43
SRP54-212ENST00000556992 KDM5DQ9BY66 1539 aa6.12□□□□□ -1.43
SRP54-212ENST00000556992 KRTAP4-2Q9BYR5 136 aa6.12□□□□□ -1.43
SRP54-212ENST00000556992 CSADQ9Y600 493 aa6.12□□□□□ -1.43
SRP54-212ENST00000556992 UHRF1BP1Q6BDS2 1440 aa6.11□□□□□ -1.43
SRP54-212ENST00000556992 LRRC10BA6NIK2 292 aa6.11□□□□□ -1.43
SRP54-212ENST00000556992 RAPGEF3O95398 923 aa6.11□□□□□ -1.43
SRP54-212ENST00000556992 IGHA2P01877 340 aa6.11□□□□□ -1.43
SRP54-212ENST00000556992 PTPN12Q05209 780 aaKnown RBP6.11□□□□□ -1.43
SRP54-212ENST00000556992 MESP2Q0VG99 397 aa6.11□□□□□ -1.43
SRP54-212ENST00000556992 ANGEL2Q5VTE6 544 aaKnown RBP6.11□□□□□ -1.43
SRP54-212ENST00000556992 DTHD1Q6ZMT9 781 aa6.11□□□□□ -1.43
SRP54-212ENST00000556992 PHF6Q8IWS0 365 aaKnown RBP eCLIP6.11□□□□□ -1.43
SRP54-212ENST00000556992 PCOLCE2Q9UKZ9 415 aa6.11□□□□□ -1.43
SRP54-212ENST00000556992 ATP10AO60312 1499 aa6.1□□□□□ -1.43
SRP54-212ENST00000556992 NEO1Q92859 1461 aa6.1□□□□□ -1.43
SRP54-212ENST00000556992 WASHC2AQ641Q2 1341 aa6.1□□□□□ -1.43
SRP54-212ENST00000556992 ZNF503-AS2A6NEH8 195 aa6.1□□□□□ -1.43
SRP54-212ENST00000556992 KRTAP9-7A8MTY7 169 aa6.1□□□□□ -1.43
SRP54-212ENST00000556992 NEFLP07196 543 aa6.1□□□□□ -1.43
SRP54-212ENST00000556992 IKZF1Q13422 519 aa6.1□□□□□ -1.43
SRP54-212ENST00000556992 MLANAQ16655 118 aa6.1□□□□□ -1.43
SRP54-212ENST00000556992 RPS26P11Q5JNZ5 115 aaPredicted RBP6.1□□□□□ -1.43
SRP54-212ENST00000556992 MAP1SQ66K74 1059 aaPredicted RBP6.1□□□□□ -1.43
SRP54-212ENST00000556992 SULF2Q8IWU5 870 aa6.1□□□□□ -1.43
SRP54-212ENST00000556992 TMEM40Q8WWA1 233 aa6.1□□□□□ -1.43
SRP54-212ENST00000556992 YTHDC1Q96MU7 727 aaKnown RBP6.1□□□□□ -1.43
SRP54-212ENST00000556992 EGFL7Q9UHF1 273 aa6.1□□□□□ -1.43
SRP54-212ENST00000556992 CDC42BPAQ5VT25 1732 aa6.1□□□□□ -1.43
SRP54-212ENST00000556992 GLI2P10070 1586 aa6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms