RNA–Protein interactions for RNA: ENST00000556956.1

SLIRP-208, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 2

Gene SLIRP, Length 450 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-208ENST00000556956 WDR97A6NE52 1622 aa3.83□□□□□ -1.8
SLIRP-208ENST00000556956 ZBED9Q6R2W3 1325 aa3.82□□□□□ -1.8
SLIRP-208ENST00000556956 SYNGAP1Q96PV0 1343 aa3.82□□□□□ -1.8
SLIRP-208ENST00000556956 TMEM238LA0A1B0GVL6 79 aa3.82□□□□□ -1.8
SLIRP-208ENST00000556956 METTL12A8MUP2 240 aa3.82□□□□□ -1.8
SLIRP-208ENST00000556956 GIPC1O14908 333 aa3.82□□□□□ -1.8
SLIRP-208ENST00000556956 B3GALT4O96024 378 aa3.82□□□□□ -1.8
SLIRP-208ENST00000556956 TNFRSF1AP19438 455 aa3.82□□□□□ -1.8
SLIRP-208ENST00000556956 MAOBP27338 520 aa3.82□□□□□ -1.8
SLIRP-208ENST00000556956 ZNF423Q2M1K9 1284 aa3.82□□□□□ -1.8
SLIRP-208ENST00000556956 SPRED3Q2MJR0 410 aa3.82□□□□□ -1.8
SLIRP-208ENST00000556956 PRPF40BQ6NWY9 871 aaKnown RBP3.82□□□□□ -1.8
SLIRP-208ENST00000556956 DTHD1Q6ZMT9 781 aa3.82□□□□□ -1.8
SLIRP-208ENST00000556956 KCNN1Q92952 543 aa3.82□□□□□ -1.8
SLIRP-208ENST00000556956 HRASLS5Q96KN8 279 aa3.82□□□□□ -1.8
SLIRP-208ENST00000556956 HIRIP3Q9BW71 556 aaPredicted RBP3.82□□□□□ -1.8
SLIRP-208ENST00000556956 SRCIN1Q9C0H9 1055 aa3.82□□□□□ -1.8
SLIRP-208ENST00000556956 EPB41L4BQ9H329 900 aa3.82□□□□□ -1.8
SLIRP-208ENST00000556956 SRRDQ9UH36 339 aa3.82□□□□□ -1.8
SLIRP-208ENST00000556956 ARHGAP35Q9NRY4 1499 aa3.81□□□□□ -1.8
SLIRP-208ENST00000556956 FHAD1B1AJZ9 1412 aa3.81□□□□□ -1.8
SLIRP-208ENST00000556956 GPR182O15218 404 aa3.81□□□□□ -1.8
SLIRP-208ENST00000556956 PPM1GO15355 546 aaPredicted RBP3.81□□□□□ -1.8
SLIRP-208ENST00000556956 HMGA2P52926 109 aa3.81□□□□□ -1.8
SLIRP-208ENST00000556956 ATP2B2Q01814 1243 aa3.81□□□□□ -1.8
SLIRP-208ENST00000556956 IFI16Q16666 785 aaKnown RBP3.81□□□□□ -1.8
SLIRP-208ENST00000556956 USPL1Q5W0Q7 1092 aa3.81□□□□□ -1.8
SLIRP-208ENST00000556956 ALG1LQ6GMV1 187 aa3.81□□□□□ -1.8
SLIRP-208ENST00000556956 TMC7Q7Z402 723 aa3.81□□□□□ -1.8
SLIRP-208ENST00000556956 FBF1Q8TES7 1133 aa3.81□□□□□ -1.8
SLIRP-208ENST00000556956 TRAIPQ9BWF2 469 aa3.81□□□□□ -1.8
SLIRP-208ENST00000556956 ZNF576Q9H609 170 aa3.81□□□□□ -1.8
SLIRP-208ENST00000556956 LGR6Q9HBX8 967 aa3.81□□□□□ -1.8
SLIRP-208ENST00000556956 TMEM39AQ9NV64 488 aa3.81□□□□□ -1.8
SLIRP-208ENST00000556956 PLAGL2Q9UPG8 496 aa3.81□□□□□ -1.8
SLIRP-208ENST00000556956 SAMM50Q9Y512 469 aa3.81□□□□□ -1.8
SLIRP-208ENST00000556956 KIF21AQ7Z4S6 1674 aa3.81□□□□□ -1.8
SLIRP-208ENST00000556956 TOP2BQ02880 1626 aa3.81□□□□□ -1.8
SLIRP-208ENST00000556956 LRRC9Q6ZRR7 1453 aa3.8□□□□□ -1.8
SLIRP-208ENST00000556956 PHLDB1Q86UU1 1377 aa3.8□□□□□ -1.8
SLIRP-208ENST00000556956 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP3.8□□□□□ -1.8
SLIRP-208ENST00000556956 TCERG1O14776 1098 aaKnown RBP3.8□□□□□ -1.8
SLIRP-208ENST00000556956 TREHO43280 583 aa3.8□□□□□ -1.8
SLIRP-208ENST00000556956 FSHBP01225 129 aa3.8□□□□□ -1.8
SLIRP-208ENST00000556956 HSPA5P11021 654 aaKnown RBP3.8□□□□□ -1.8
SLIRP-208ENST00000556956 HNRNPA0Q13151 305 aaKnown RBP3.8□□□□□ -1.8
SLIRP-208ENST00000556956 PDE3AQ14432 1141 aa3.8□□□□□ -1.8
SLIRP-208ENST00000556956 CCDC136Q96JN2 1154 aa3.8□□□□□ -1.8
SLIRP-208ENST00000556956 FRMD6Q96NE9 622 aa3.8□□□□□ -1.8
SLIRP-208ENST00000556956 EMILIN2Q9BXX0 1053 aa3.8□□□□□ -1.8
SLIRP-208ENST00000556956 MRS2Q9HD23 443 aa3.8□□□□□ -1.8
SLIRP-208ENST00000556956 LAMC3Q9Y6N6 1575 aa3.8□□□□□ -1.8
SLIRP-208ENST00000556956 SMG6Q86US8 1419 aaKnown RBP3.79□□□□□ -1.8
SLIRP-208ENST00000556956 WASHC2AQ641Q2 1341 aa3.79□□□□□ -1.8
SLIRP-208ENST00000556956 ADH5P11766 374 aa3.79□□□□□ -1.8
SLIRP-208ENST00000556956 ASPAP45381 313 aa3.79□□□□□ -1.8
SLIRP-208ENST00000556956 ZP2Q05996 745 aa3.79□□□□□ -1.8
SLIRP-208ENST00000556956 GRM2Q14416 872 aa3.79□□□□□ -1.8
SLIRP-208ENST00000556956 DSC3Q14574 896 aa3.79□□□□□ -1.8
SLIRP-208ENST00000556956 CYP27C1Q4G0S4 372 aa3.79□□□□□ -1.8
SLIRP-208ENST00000556956 AKAP4Q5JQC9 854 aa3.79□□□□□ -1.8
SLIRP-208ENST00000556956 DYMQ7RTS9 669 aa3.79□□□□□ -1.8
SLIRP-208ENST00000556956 FAM9BQ8IZU0 186 aa3.79□□□□□ -1.8
SLIRP-208ENST00000556956 EPS8L3Q8TE67 593 aaKnown RBP3.79□□□□□ -1.8
SLIRP-208ENST00000556956 BCO2Q9BYV7 579 aa3.79□□□□□ -1.8
SLIRP-208ENST00000556956 CEP44Q9C0F1 390 aa3.79□□□□□ -1.8
SLIRP-208ENST00000556956 PRKRIP1Q9H875 184 aaPredicted RBP3.79□□□□□ -1.8
SLIRP-208ENST00000556956 ABCB6Q9NP58 842 aa3.79□□□□□ -1.8
SLIRP-208ENST00000556956 KRT82Q9NSB4 513 aa3.79□□□□□ -1.8
SLIRP-208ENST00000556956 FAM105AQ9NUU6 356 aa3.79□□□□□ -1.8
SLIRP-208ENST00000556956 GPN3Q9UHW5 284 aaPredicted RBP3.79□□□□□ -1.8
SLIRP-208ENST00000556956 NUDCQ9Y266 331 aa3.79□□□□□ -1.8
SLIRP-208ENST00000556956 UACAQ9BZF9 1416 aa3.78□□□□□ -1.8
SLIRP-208ENST00000556956 CNTLNQ9NXG0 1405 aa3.78□□□□□ -1.8
SLIRP-208ENST00000556956 CARMIL1Q5VZK9 1371 aa3.78□□□□□ -1.8
SLIRP-208ENST00000556956 RNF123Q5XPI4 1314 aa3.78□□□□□ -1.8
SLIRP-208ENST00000556956 TIAM1Q13009 1591 aa3.78□□□□□ -1.8
SLIRP-208ENST00000556956 PNMA6FA0A0J9YX94 578 aa3.78□□□□□ -1.8
SLIRP-208ENST00000556956 GRIN3BO60391 1043 aa3.78□□□□□ -1.8
SLIRP-208ENST00000556956 AOC2O75106 756 aa3.78□□□□□ -1.8
SLIRP-208ENST00000556956 PDIA4P13667 645 aaKnown RBP3.78□□□□□ -1.8
SLIRP-208ENST00000556956 GSTT1P30711 240 aa3.78□□□□□ -1.8
SLIRP-208ENST00000556956 FCGRTP55899 365 aa3.78□□□□□ -1.8
SLIRP-208ENST00000556956 ENOX2Q16206 610 aaKnown RBP3.78□□□□□ -1.8
SLIRP-208ENST00000556956 LARP7Q4G0J3 582 aaKnown RBP eCLIP3.78□□□□□ -1.8
SLIRP-208ENST00000556956 CRB2Q5IJ48 1285 aa3.78□□□□□ -1.8
SLIRP-208ENST00000556956 CYFIP1Q7L576 1253 aa3.78□□□□□ -1.8
SLIRP-208ENST00000556956 FEZF2Q8TBJ5 459 aa3.78□□□□□ -1.8
SLIRP-208ENST00000556956 ASB16Q96NS5 453 aa3.78□□□□□ -1.8
SLIRP-208ENST00000556956 GPR20Q99678 358 aa3.78□□□□□ -1.8
SLIRP-208ENST00000556956 NRSN2Q9GZP1 204 aa3.78□□□□□ -1.8
SLIRP-208ENST00000556956 SCAND2PQ9GZW5 306 aaPredicted RBP3.78□□□□□ -1.8
SLIRP-208ENST00000556956 C19orf73Q9NVV2 129 aa3.78□□□□□ -1.8
SLIRP-208ENST00000556956 PPM1HQ9ULR3 514 aa3.78□□□□□ -1.8
SLIRP-208ENST00000556956 SPG7Q9UQ90 795 aa3.78□□□□□ -1.8
SLIRP-208ENST00000556956 AKAP2Q9Y2D5 859 aa3.78□□□□□ -1.8
SLIRP-208ENST00000556956 IVNS1ABPQ9Y6Y0 642 aa3.78□□□□□ -1.8
SLIRP-208ENST00000556956 WASHC2CQ9Y4E1 1318 aa3.77□□□□□ -1.81
SLIRP-208ENST00000556956 CEACAM5P06731 702 aa3.77□□□□□ -1.81
SLIRP-208ENST00000556956 NEFMP07197 916 aa3.77□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms