RNA–Protein interactions for RNA: ENST00000556083.1

ACTN1-216, Transcript of actinin alpha 1, humanhuman

TSL 1 (best)

Gene ACTN1, Length 4,674 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-216ENST00000556083 PRPF31Q8WWY3 499 aaKnown RBP11.93□□□□□ -0.5
ACTN1-216ENST00000556083 TBC1D31Q96DN5 1066 aa11.93□□□□□ -0.5
ACTN1-216ENST00000556083 SDAD1Q9NVU7 687 aaKnown RBP eCLIP11.93□□□□□ -0.5
ACTN1-216ENST00000556083 IFNKQ9P0W0 207 aa11.93□□□□□ -0.5
ACTN1-216ENST00000556083 PA2G4Q9UQ80 394 aaKnown RBP11.93□□□□□ -0.5
ACTN1-216ENST00000556083 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.93□□□□□ -0.5
ACTN1-216ENST00000556083 SLC27A2O14975 620 aa11.93□□□□□ -0.5
ACTN1-216ENST00000556083 IGSF3O75054 1194 aa11.93□□□□□ -0.5
ACTN1-216ENST00000556083 DIS3L2Q8IYB7 885 aaKnown RBP11.93□□□□□ -0.5
ACTN1-216ENST00000556083 CNKSR1Q969H4 720 aa11.93□□□□□ -0.5
ACTN1-216ENST00000556083 HAUS1Q96CS2 278 aa11.93□□□□□ -0.5
ACTN1-216ENST00000556083 ZRANB1Q9UGI0 708 aa11.93□□□□□ -0.5
ACTN1-216ENST00000556083 AGTPBP1Q9UPW5 1226 aa11.93□□□□□ -0.5
ACTN1-216ENST00000556083 MRPL11Q9Y3B7 192 aaKnown RBP11.93□□□□□ -0.5
ACTN1-216ENST00000556083 CIB2O75838 187 aa11.92□□□□□ -0.5
ACTN1-216ENST00000556083 ATF7P17544 494 aaPredicted RBP11.92□□□□□ -0.5
ACTN1-216ENST00000556083 CWF19L2Q2TBE0 894 aaKnown RBP11.92□□□□□ -0.5
ACTN1-216ENST00000556083 ZNF569Q5MCW4 686 aa11.92□□□□□ -0.5
ACTN1-216ENST00000556083 VWA3AA6NCI4 1184 aa11.92□□□□□ -0.5
ACTN1-216ENST00000556083 E7EVH7 732 aa11.92□□□□□ -0.5
ACTN1-216ENST00000556083 H7C1D1 291 aa11.92□□□□□ -0.5
ACTN1-216ENST00000556083 ARL1P40616 181 aaPredicted RBP11.92□□□□□ -0.5
ACTN1-216ENST00000556083 NLRP12P59046 1061 aa11.92□□□□□ -0.5
ACTN1-216ENST00000556083 REXO1Q8N1G1 1221 aaKnown RBP11.92□□□□□ -0.5
ACTN1-216ENST00000556083 IGSF22Q8N9C0 903 aa11.92□□□□□ -0.5
ACTN1-216ENST00000556083 IPO4Q8TEX9 1081 aaKnown RBP11.92□□□□□ -0.5
ACTN1-216ENST00000556083 PFDN4Q9NQP4 134 aa11.92□□□□□ -0.5
ACTN1-216ENST00000556083 GUCA1BQ9UMX6 200 aa11.92□□□□□ -0.5
ACTN1-216ENST00000556083 CC2D2BQ6DHV5 1058 aa11.92□□□□□ -0.5
ACTN1-216ENST00000556083 CNPY4Q8N129 248 aa11.92□□□□□ -0.5
ACTN1-216ENST00000556083 MIGA1Q8NAN2 632 aa11.92□□□□□ -0.5
ACTN1-216ENST00000556083 ZNF277Q9NRM2 450 aaPredicted RBP11.92□□□□□ -0.5
ACTN1-216ENST00000556083 KDM2BQ8NHM5 1336 aa11.92□□□□□ -0.5
ACTN1-216ENST00000556083 GOLGA8CPA6NN73 597 aa11.92□□□□□ -0.5
ACTN1-216ENST00000556083 XPOTO43592 962 aaKnown RBP11.92□□□□□ -0.5
ACTN1-216ENST00000556083 NR1I2O75469 434 aa11.92□□□□□ -0.5
ACTN1-216ENST00000556083 PAK2Q13177 524 aa11.92□□□□□ -0.5
ACTN1-216ENST00000556083 DLGAP5Q15398 846 aa11.92□□□□□ -0.5
ACTN1-216ENST00000556083 SH2D4BQ5SQS7 431 aa11.92□□□□□ -0.5
ACTN1-216ENST00000556083 LARGE2Q8N3Y3 721 aa11.92□□□□□ -0.5
ACTN1-216ENST00000556083 BEGAINQ9BUH8 593 aa11.92□□□□□ -0.5
ACTN1-216ENST00000556083 RAB17Q9H0T7 212 aa11.92□□□□□ -0.5
ACTN1-216ENST00000556083 SYNRGQ9UMZ2 1314 aa11.91□□□□□ -0.5
ACTN1-216ENST00000556083 SPATA5Q8NB90 893 aa11.91□□□□□ -0.5
ACTN1-216ENST00000556083 BBOF1Q8ND07 529 aa11.91□□□□□ -0.5
ACTN1-216ENST00000556083 ATP2A3Q93084 1043 aa11.91□□□□□ -0.5
ACTN1-216ENST00000556083 LRRC2Q9BYS8 371 aa11.91□□□□□ -0.5
ACTN1-216ENST00000556083 CD2APQ9Y5K6 639 aa11.91□□□□□ -0.5
ACTN1-216ENST00000556083 PLEKHG1Q9ULL1 1385 aa11.91□□□□□ -0.5
ACTN1-216ENST00000556083 DDAH1O94760 285 aa11.91□□□□□ -0.5
ACTN1-216ENST00000556083 TRAPPC10P48553 1259 aa11.91□□□□□ -0.5
ACTN1-216ENST00000556083 RAPGEF1Q13905 1077 aa11.91□□□□□ -0.5
ACTN1-216ENST00000556083 AKNAD1Q5T1N1 836 aa11.91□□□□□ -0.5
ACTN1-216ENST00000556083 INTS8Q75QN2 995 aaKnown RBP11.91□□□□□ -0.5
ACTN1-216ENST00000556083 TRIM6Q9C030 488 aaPredicted RBP11.91□□□□□ -0.5
ACTN1-216ENST00000556083 AATKQ6ZMQ8 1374 aa11.91□□□□□ -0.5
ACTN1-216ENST00000556083 TMEM2Q9UHN6 1383 aa11.91□□□□□ -0.5
ACTN1-216ENST00000556083 POLR2BP30876 1174 aaKnown RBP11.91□□□□□ -0.5
ACTN1-216ENST00000556083 CBX1P83916 185 aa11.91□□□□□ -0.5
ACTN1-216ENST00000556083 C8orf34Q49A92 452 aa11.91□□□□□ -0.5
ACTN1-216ENST00000556083 MAP3K21Q5TCX8 1036 aa11.91□□□□□ -0.5
ACTN1-216ENST00000556083 C8orf74Q6P047 294 aa11.91□□□□□ -0.5
ACTN1-216ENST00000556083 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.91□□□□□ -0.55e-7■□□□□ 8.5
ACTN1-216ENST00000556083 ATP10DQ9P241 1426 aa11.91□□□□□ -0.5
ACTN1-216ENST00000556083 RPS8P62241 208 aaKnown RBP11.9□□□□□ -0.5
ACTN1-216ENST00000556083 IRX4P78413 519 aa11.9□□□□□ -0.5
ACTN1-216ENST00000556083 DCAF17Q5H9S7 520 aaPredicted RBP11.9□□□□□ -0.5
ACTN1-216ENST00000556083 ZBTB8OSQ8IWT0 167 aa11.9□□□□□ -0.5
ACTN1-216ENST00000556083 SNX29Q8TEQ0 813 aa11.9□□□□□ -0.5
ACTN1-216ENST00000556083 SECISBP2LQ93073 1101 aaKnown RBP11.9□□□□□ -0.5
ACTN1-216ENST00000556083 MYL1P05976 194 aa11.9□□□□□ -0.5
ACTN1-216ENST00000556083 MNAT1P51948 309 aa11.9□□□□□ -0.5
ACTN1-216ENST00000556083 ISM2Q6H9L7 571 aa11.9□□□□□ -0.5
ACTN1-216ENST00000556083 POTEDQ86YR6 584 aa11.9□□□□□ -0.5
ACTN1-216ENST00000556083 GRK7Q8WTQ7 553 aa11.9□□□□□ -0.5
ACTN1-216ENST00000556083 VCXQ9H320 206 aa11.9□□□□□ -0.5
ACTN1-216ENST00000556083 EIF3CLB5ME19 914 aaKnown RBP11.9□□□□□ -0.5
ACTN1-216ENST00000556083 PTGS1P23219 599 aa11.9□□□□□ -0.5
ACTN1-216ENST00000556083 BPIFB4P59827 614 aa11.9□□□□□ -0.5
ACTN1-216ENST00000556083 ITIH3Q06033 890 aa11.9□□□□□ -0.5
ACTN1-216ENST00000556083 CALCRLQ16602 461 aa11.9□□□□□ -0.5
ACTN1-216ENST00000556083 CDC37L1Q7L3B6 337 aa11.9□□□□□ -0.5
ACTN1-216ENST00000556083 VPS52Q8N1B4 723 aa11.9□□□□□ -0.5
ACTN1-216ENST00000556083 NLGN1Q8N2Q7 840 aa11.9□□□□□ -0.5
ACTN1-216ENST00000556083 EIF3CQ99613 913 aaKnown RBP11.9□□□□□ -0.5
ACTN1-216ENST00000556083 RNF123Q5XPI4 1314 aa11.9□□□□□ -0.5
ACTN1-216ENST00000556083 MAGI2Q86UL8 1455 aa11.9□□□□□ -0.5
ACTN1-216ENST00000556083 MAPKBP1O60336 1514 aa11.9□□□□□ -0.5
ACTN1-216ENST00000556083 ZMYM4Q5VZL5 1548 aa11.9□□□□□ -0.5
ACTN1-216ENST00000556083 CCDC169A6NNP5 214 aa11.9□□□□□ -0.51
ACTN1-216ENST00000556083 PER1O15534 1290 aaPredicted RBP11.9□□□□□ -0.51
ACTN1-216ENST00000556083 PCCAP05165 728 aaPredicted RBP11.9□□□□□ -0.51
ACTN1-216ENST00000556083 PPFIA1Q13136 1202 aa11.9□□□□□ -0.51
ACTN1-216ENST00000556083 MCM6Q14566 821 aa11.9□□□□□ -0.51
ACTN1-216ENST00000556083 CFAP221Q4G0U5 840 aa11.9□□□□□ -0.51
ACTN1-216ENST00000556083 CACNA2D3Q8IZS8 1091 aa11.9□□□□□ -0.51
ACTN1-216ENST00000556083 CCDC114Q96M63 670 aa11.9□□□□□ -0.51
ACTN1-216ENST00000556083 CARD10Q9BWT7 1032 aa11.9□□□□□ -0.51
ACTN1-216ENST00000556083 ATG3Q9NT62 314 aa11.9□□□□□ -0.51
ACTN1-216ENST00000556083 CSADQ9Y600 493 aa11.9□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms