RNA–Protein interactions for RNA: ENST00000555518.5

LINC00643-203, long intergenic non-protein coding RNA 643, humanhuman

TSL 4

Gene LINC00643, Length 552 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-203ENST00000555518 RASSF4Q9H2L5 321 aa8.37□□□□□ -1.07
LINC00643-203ENST00000555518 KCNK4Q9NYG8 393 aa8.37□□□□□ -1.07
LINC00643-203ENST00000555518 ROBO1Q9Y6N7 1651 aa8.37□□□□□ -1.07
LINC00643-203ENST00000555518 SPATA31A3Q5VYP0 1347 aa8.36□□□□□ -1.07
LINC00643-203ENST00000555518 KRTAP4-8A0A0G2JLE6 195 aa8.36□□□□□ -1.07
LINC00643-203ENST00000555518 HMX2A2RU54 273 aa8.36□□□□□ -1.07
LINC00643-203ENST00000555518 PRR19A6NJB7 356 aa8.36□□□□□ -1.07
LINC00643-203ENST00000555518 H3BRJ5 948 aa8.36□□□□□ -1.07
LINC00643-203ENST00000555518 TM4SF5O14894 197 aa8.36□□□□□ -1.07
LINC00643-203ENST00000555518 IL13P35225 146 aa8.36□□□□□ -1.07
LINC00643-203ENST00000555518 CPSF6Q16630 551 aaKnown RBP eCLIP8.36□□□□□ -1.07
LINC00643-203ENST00000555518 COL13A1Q5TAT6 717 aaPredicted RBP8.36□□□□□ -1.07
LINC00643-203ENST00000555518 TXNDC11Q6PKC3 985 aa8.36□□□□□ -1.07
LINC00643-203ENST00000555518 CARD10Q9BWT7 1032 aa8.36□□□□□ -1.07
LINC00643-203ENST00000555518 SAP130Q9H0E3 1048 aa8.36□□□□□ -1.07
LINC00643-203ENST00000555518 STIM2Q9P246 746 aa8.36□□□□□ -1.07
LINC00643-203ENST00000555518 RTL1A6NKG5 1358 aa8.35□□□□□ -1.07
LINC00643-203ENST00000555518 KIF24Q5T7B8 1368 aa8.35□□□□□ -1.07
LINC00643-203ENST00000555518 WDR43Q15061 677 aaKnown RBP eCLIP8.35□□□□□ -1.07
LINC00643-203ENST00000555518 BEND4Q6ZU67 534 aa8.35□□□□□ -1.07
LINC00643-203ENST00000555518 CEP120Q8N960 986 aa8.35□□□□□ -1.07
LINC00643-203ENST00000555518 CFAP53Q96M91 514 aa8.35□□□□□ -1.07
LINC00643-203ENST00000555518 KCNF1Q9H3M0 494 aa8.35□□□□□ -1.07
LINC00643-203ENST00000555518 LTN1O94822 1766 aa8.35□□□□□ -1.07
LINC00643-203ENST00000555518 FLT4P35916 1363 aa8.35□□□□□ -1.07
LINC00643-203ENST00000555518 ABCA3Q99758 1704 aa8.34□□□□□ -1.07
LINC00643-203ENST00000555518 TNFRSF10BO14763 440 aa8.34□□□□□ -1.07
LINC00643-203ENST00000555518 DIAPH1O60610 1272 aaKnown RBP8.34□□□□□ -1.07
LINC00643-203ENST00000555518 BMP3P12645 472 aa8.34□□□□□ -1.07
LINC00643-203ENST00000555518 EPHA1P21709 976 aa8.34□□□□□ -1.07
LINC00643-203ENST00000555518 ARL4DP49703 201 aa8.34□□□□□ -1.07
LINC00643-203ENST00000555518 EIF4A2Q14240 407 aaKnown RBP8.34□□□□□ -1.07
LINC00643-203ENST00000555518 FDX2Q6P4F2 183 aa8.34□□□□□ -1.07
LINC00643-203ENST00000555518 SHKBP1Q8TBC3 707 aa8.34□□□□□ -1.07
LINC00643-203ENST00000555518 FOXD4L4Q8WXT5 416 aaPredicted RBP8.34□□□□□ -1.07
LINC00643-203ENST00000555518 PLEKHF1Q96S99 279 aa8.34□□□□□ -1.07
LINC00643-203ENST00000555518 CXXC1Q9P0U4 656 aaPredicted RBP8.34□□□□□ -1.07
LINC00643-203ENST00000555518 ARHGEF10O15013 1369 aa8.34□□□□□ -1.07
LINC00643-203ENST00000555518 ZNF521Q96K83 1311 aa8.33□□□□□ -1.08
LINC00643-203ENST00000555518 COL18A1P39060 1754 aa8.33□□□□□ -1.08
LINC00643-203ENST00000555518 GCP02774 474 aa8.33□□□□□ -1.08
LINC00643-203ENST00000555518 CDC25BP30305 580 aa8.33□□□□□ -1.08
LINC00643-203ENST00000555518 HOXC9P31274 260 aa8.33□□□□□ -1.08
LINC00643-203ENST00000555518 HSP90AB2PQ58FF8 381 aa8.33□□□□□ -1.08
LINC00643-203ENST00000555518 ARHGEF25Q86VW2 580 aa8.33□□□□□ -1.08
LINC00643-203ENST00000555518 CCDC146Q8IYE0 955 aa8.33□□□□□ -1.08
LINC00643-203ENST00000555518 GPR152Q8TDT2 470 aa8.33□□□□□ -1.08
LINC00643-203ENST00000555518 KLHDC7BQ96G42 594 aa8.33□□□□□ -1.08
LINC00643-203ENST00000555518 COL16A1Q07092 1604 aaPredicted RBP8.32□□□□□ -1.08
LINC00643-203ENST00000555518 MEGF11A6BM72 1044 aa8.32□□□□□ -1.08
LINC00643-203ENST00000555518 PPM1GO15355 546 aaPredicted RBP8.32□□□□□ -1.08
LINC00643-203ENST00000555518 EIF4EBP3O60516 100 aaPredicted RBP8.32□□□□□ -1.08
LINC00643-203ENST00000555518 CENPBP07199 599 aaPredicted RBP8.32□□□□□ -1.08
LINC00643-203ENST00000555518 KCNH5Q8NCM2 988 aa8.32□□□□□ -1.08
LINC00643-203ENST00000555518 POP1Q99575 1024 aaKnown RBP8.32□□□□□ -1.08
LINC00643-203ENST00000555518 CAMTA1Q9Y6Y1 1673 aa8.32□□□□□ -1.08
LINC00643-203ENST00000555518 ABCC6O95255 1503 aa8.32□□□□□ -1.08
LINC00643-203ENST00000555518 COL22A1Q8NFW1 1626 aaPredicted RBP8.32□□□□□ -1.08
LINC00643-203ENST00000555518 IGSF1Q8N6C5 1336 aa8.31□□□□□ -1.08
LINC00643-203ENST00000555518 LMO7Q8WWI1 1683 aa8.31□□□□□ -1.08
LINC00643-203ENST00000555518 NCAPD2Q15021 1401 aa8.31□□□□□ -1.08
LINC00643-203ENST00000555518 GAS2O43903 313 aaKnown RBP8.31□□□□□ -1.08
LINC00643-203ENST00000555518 ADAM11O75078 769 aa8.31□□□□□ -1.08
LINC00643-203ENST00000555518 U2AF1L5P0DN76 240 aaPredicted RBP8.31□□□□□ -1.08
LINC00643-203ENST00000555518 U2AF1Q01081 240 aaKnown RBP eCLIP8.31□□□□□ -1.08
LINC00643-203ENST00000555518 UBASH3BQ8TF42 649 aa8.31□□□□□ -1.08
LINC00643-203ENST00000555518 IP6K1Q92551 441 aa8.31□□□□□ -1.08
LINC00643-203ENST00000555518 PMEPA1Q969W9 287 aa8.31□□□□□ -1.08
LINC00643-203ENST00000555518 RUNDC1Q96C34 613 aa8.31□□□□□ -1.08
LINC00643-203ENST00000555518 RUSC1Q9BVN2 902 aa8.31□□□□□ -1.08
LINC00643-203ENST00000555518 ELP3Q9H9T3 547 aa8.31□□□□□ -1.08
LINC00643-203ENST00000555518 SH2B1Q9NRF2 756 aaPredicted RBP8.31□□□□□ -1.08
LINC00643-203ENST00000555518 PIM2Q9P1W9 311 aa8.31□□□□□ -1.08
LINC00643-203ENST00000555518 NUDCQ9Y266 331 aa8.31□□□□□ -1.08
LINC00643-203ENST00000555518 CPDO75976 1380 aa8.31□□□□□ -1.08
LINC00643-203ENST00000555518 KDRP35968 1356 aa8.31□□□□□ -1.08
LINC00643-203ENST00000555518 APAF1O14727 1248 aa8.3□□□□□ -1.08
LINC00643-203ENST00000555518 U2SURPO15042 1029 aaKnown RBP8.3□□□□□ -1.08
LINC00643-203ENST00000555518 PCSK2P16519 638 aa8.3□□□□□ -1.08
LINC00643-203ENST00000555518 ZNF438Q7Z4V0 828 aa8.3□□□□□ -1.08
LINC00643-203ENST00000555518 ATG3Q9NT62 314 aa8.3□□□□□ -1.08
LINC00643-203ENST00000555518 ZMIZ1Q9ULJ6 1067 aa8.3□□□□□ -1.08
LINC00643-203ENST00000555518 WDR64B1ANS9 1081 aa8.29□□□□□ -1.08
LINC00643-203ENST00000555518 DDX3YO15523 660 aaKnown RBP8.29□□□□□ -1.08
LINC00643-203ENST00000555518 ADAMTS4O75173 837 aa8.29□□□□□ -1.08
LINC00643-203ENST00000555518 PREPP48147 710 aa8.29□□□□□ -1.08
LINC00643-203ENST00000555518 AMPHP49418 695 aa8.29□□□□□ -1.08
LINC00643-203ENST00000555518 FAM26DQ5JW98 314 aa8.29□□□□□ -1.08
LINC00643-203ENST00000555518 XKR5Q6UX68 686 aa8.29□□□□□ -1.08
LINC00643-203ENST00000555518 AEBP1Q8IUX7 1158 aa8.29□□□□□ -1.08
LINC00643-203ENST00000555518 TTC16Q8NEE8 873 aa8.29□□□□□ -1.08
LINC00643-203ENST00000555518 MKNK1Q9BUB5 465 aa8.29□□□□□ -1.08
LINC00643-203ENST00000555518 ADGRE2Q9UHX3 823 aa8.29□□□□□ -1.08
LINC00643-203ENST00000555518 ANGEL1Q9UNK9 670 aaKnown RBP8.29□□□□□ -1.08
LINC00643-203ENST00000555518 RGPD5Q99666 1765 aa8.29□□□□□ -1.08
LINC00643-203ENST00000555518 PHLPP1O60346 1717 aa8.29□□□□□ -1.08
LINC00643-203ENST00000555518 HMOX1P09601 288 aa8.28□□□□□ -1.08
LINC00643-203ENST00000555518 PRKAR2BP31323 418 aa8.28□□□□□ -1.08
LINC00643-203ENST00000555518 C19orf57Q0VDD7 668 aa8.28□□□□□ -1.08
LINC00643-203ENST00000555518 NAA30Q147X3 362 aaPredicted RBP8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms