RNA–Protein interactions for RNA: ENST00000554439.5

PRPF39-207, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 5

Gene PRPF39, Length 2,982 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-207ENST00000554439 NOP9Q86U38 636 aaKnown RBP3.03□□□□□ -1.92
PRPF39-207ENST00000554439 FERMT3Q86UX7 667 aa3.03□□□□□ -1.92
PRPF39-207ENST00000554439 CKAP2LQ8IYA6 745 aa3.03□□□□□ -1.92
PRPF39-207ENST00000554439 CCDC116Q8IYX3 515 aa3.03□□□□□ -1.92
PRPF39-207ENST00000554439 NECAB1Q8N987 351 aa3.03□□□□□ -1.92
PRPF39-207ENST00000554439 ANKRD7Q92527 254 aa3.03□□□□□ -1.92
PRPF39-207ENST00000554439 CNKSR1Q969H4 720 aa3.03□□□□□ -1.92
PRPF39-207ENST00000554439 KLRG1Q96E93 195 aa3.03□□□□□ -1.92
PRPF39-207ENST00000554439 NGLY1Q96IV0 654 aa3.03□□□□□ -1.92
PRPF39-207ENST00000554439 COG3Q96JB2 828 aa3.03□□□□□ -1.92
PRPF39-207ENST00000554439 TTC14Q96N46 770 aa3.03□□□□□ -1.92
PRPF39-207ENST00000554439 ESF1Q9H501 851 aaKnown RBP3.03□□□□□ -1.92
PRPF39-207ENST00000554439 TSPYL4Q9UJ04 414 aa3.03□□□□□ -1.92
PRPF39-207ENST00000554439 CPSF1Q10570 1443 aaKnown RBP3.03□□□□□ -1.92
PRPF39-207ENST00000554439 RIMS1Q86UR5 1692 aaKnown RBP3.03□□□□□ -1.92
PRPF39-207ENST00000554439 CDK12Q9NYV4 1490 aaPredicted RBP3.03□□□□□ -1.92
PRPF39-207ENST00000554439 SERTM1A2A2V5 107 aa3.03□□□□□ -1.92
PRPF39-207ENST00000554439 VPS37CA5D8V6 355 aaPredicted RBP3.03□□□□□ -1.92
PRPF39-207ENST00000554439 EIF1AYO14602 144 aaKnown RBP3.03□□□□□ -1.92
PRPF39-207ENST00000554439 LIG1P18858 919 aa3.03□□□□□ -1.92
PRPF39-207ENST00000554439 ATP2B1P20020 1258 aa3.03□□□□□ -1.92
PRPF39-207ENST00000554439 CASTP20810 708 aaKnown RBP3.03□□□□□ -1.92
PRPF39-207ENST00000554439 GJB2P29033 226 aa3.03□□□□□ -1.92
PRPF39-207ENST00000554439 USP5P45974 858 aa3.03□□□□□ -1.92
PRPF39-207ENST00000554439 ST3GAL1Q11201 340 aa3.03□□□□□ -1.92
PRPF39-207ENST00000554439 EHBP1Q8NDI1 1231 aa3.03□□□□□ -1.92
PRPF39-207ENST00000554439 GTPBP4Q9BZE4 634 aaKnown RBP3.03□□□□□ -1.92
PRPF39-207ENST00000554439 OSBPL7Q9BZF2 842 aa3.03□□□□□ -1.92
PRPF39-207ENST00000554439 NOL12Q9UGY1 213 aaKnown RBP eCLIP3.03□□□□□ -1.923e-10■■■■□ 19.3
PRPF39-207ENST00000554439 SMC3Q9UQE7 1217 aa3.03□□□□□ -1.92
PRPF39-207ENST00000554439 MTMR6Q9Y217 621 aa3.03□□□□□ -1.92
PRPF39-207ENST00000554439 PARP3Q9Y6F1 533 aa3.03□□□□□ -1.92
PRPF39-207ENST00000554439 V9GYY5 206 aaPredicted RBP3.03□□□□□ -1.92
PRPF39-207ENST00000554439 ALKQ9UM73 1620 aa3.03□□□□□ -1.92
PRPF39-207ENST00000554439 CTIFO43310 598 aaKnown RBP3.03□□□□□ -1.93
PRPF39-207ENST00000554439 DNAJA1P31689 397 aaKnown RBP3.03□□□□□ -1.93
PRPF39-207ENST00000554439 CCT4P50991 539 aaKnown RBP3.03□□□□□ -1.93
PRPF39-207ENST00000554439 ATP8B2P98198 1209 aa3.03□□□□□ -1.93
PRPF39-207ENST00000554439 PTH1RQ03431 593 aa3.03□□□□□ -1.93
PRPF39-207ENST00000554439 TLR1Q15399 786 aa3.03□□□□□ -1.93
PRPF39-207ENST00000554439 MTHFSDQ2M296 383 aaKnown RBP3.03□□□□□ -1.93
PRPF39-207ENST00000554439 PI16Q6UXB8 463 aa3.03□□□□□ -1.93
PRPF39-207ENST00000554439 CCDC186Q7Z3E2 898 aa3.03□□□□□ -1.93
PRPF39-207ENST00000554439 MCF2L2Q86YR7 1114 aa3.03□□□□□ -1.93
PRPF39-207ENST00000554439 PI4K2BQ8TCG2 481 aa3.03□□□□□ -1.93
PRPF39-207ENST00000554439 NUDT16Q96DE0 195 aaKnown RBP3.03□□□□□ -1.93
PRPF39-207ENST00000554439 TCEANC2Q96MN5 208 aa3.03□□□□□ -1.93
PRPF39-207ENST00000554439 LSG1Q9H089 658 aaKnown RBP3.03□□□□□ -1.93
PRPF39-207ENST00000554439 LIMCH1Q9UPQ0 1083 aa3.03□□□□□ -1.93
PRPF39-207ENST00000554439 HCN4Q9Y3Q4 1203 aa3.03□□□□□ -1.93
PRPF39-207ENST00000554439 MRVI1Q9Y6F6 885 aa3.03□□□□□ -1.93
PRPF39-207ENST00000554439 CRB1P82279 1406 aa3.03□□□□□ -1.93
PRPF39-207ENST00000554439 USP31Q70CQ4 1352 aa3.02□□□□□ -1.93
PRPF39-207ENST00000554439 PREX1Q8TCU6 1659 aa3.02□□□□□ -1.93
PRPF39-207ENST00000554439 TMEM131LA2VDJ0 1609 aa3.02□□□□□ -1.93
PRPF39-207ENST00000554439 RAD50Q92878 1312 aa3.02□□□□□ -1.93
PRPF39-207ENST00000554439 EDC4Q6P2E9 1401 aaKnown RBP3.02□□□□□ -1.93
PRPF39-207ENST00000554439 A0A087WWV3 80 aa3.02□□□□□ -1.93
PRPF39-207ENST00000554439 TLDC2A0PJX2 215 aa3.02□□□□□ -1.93
PRPF39-207ENST00000554439 USP27XA6NNY8 438 aa3.02□□□□□ -1.93
PRPF39-207ENST00000554439 SGSM2O43147 1006 aa3.02□□□□□ -1.93
PRPF39-207ENST00000554439 FGRP09769 529 aa3.02□□□□□ -1.93
PRPF39-207ENST00000554439 TYRO3Q06418 890 aa3.02□□□□□ -1.93
PRPF39-207ENST00000554439 CHAF1AQ13111 956 aaPredicted RBP3.02□□□□□ -1.93
PRPF39-207ENST00000554439 LYPD4Q6UWN0 246 aa3.02□□□□□ -1.93
PRPF39-207ENST00000554439 CDC37L1Q7L3B6 337 aa3.02□□□□□ -1.93
PRPF39-207ENST00000554439 TTC6Q86TZ1 520 aa3.02□□□□□ -1.93
PRPF39-207ENST00000554439 DRC7Q8IY82 874 aa3.02□□□□□ -1.93
PRPF39-207ENST00000554439 NLGN1Q8N2Q7 840 aa3.02□□□□□ -1.93
PRPF39-207ENST00000554439 IFT43Q96FT9 208 aa3.02□□□□□ -1.93
PRPF39-207ENST00000554439 USP44Q9H0E7 712 aa3.02□□□□□ -1.93
PRPF39-207ENST00000554439 ST7Q9NRC1 585 aa3.02□□□□□ -1.93
PRPF39-207ENST00000554439 DIAPH3Q9NSV4 1193 aa3.02□□□□□ -1.93
PRPF39-207ENST00000554439 HYPKQ9NX55 129 aa3.02□□□□□ -1.93
PRPF39-207ENST00000554439 CGNQ9P2M7 1197 aaKnown RBP3.02□□□□□ -1.93
PRPF39-207ENST00000554439 STAP2Q9UGK3 403 aa3.02□□□□□ -1.93
PRPF39-207ENST00000554439 TBX22Q9Y458 520 aa3.02□□□□□ -1.93
PRPF39-207ENST00000554439 ATP7BP35670 1465 aa3.02□□□□□ -1.93
PRPF39-207ENST00000554439 SOS1Q07889 1333 aaPredicted RBP3.02□□□□□ -1.93
PRPF39-207ENST00000554439 MAP3K19Q56UN5 1328 aa3.02□□□□□ -1.93
PRPF39-207ENST00000554439 SCO2A0A1W2PP80 73 aa3.02□□□□□ -1.93
PRPF39-207ENST00000554439 SURF6O75683 361 aaKnown RBP3.02□□□□□ -1.93
PRPF39-207ENST00000554439 LETM1O95202 739 aaPredicted RBP3.02□□□□□ -1.93
PRPF39-207ENST00000554439 KIF20AO95235 890 aa3.02□□□□□ -1.93
PRPF39-207ENST00000554439 CCDC192P0DO97 292 aa3.02□□□□□ -1.93
PRPF39-207ENST00000554439 TNNT1P13805 278 aa3.02□□□□□ -1.93
PRPF39-207ENST00000554439 NR5A1Q13285 461 aa3.02□□□□□ -1.93
PRPF39-207ENST00000554439 CLN3Q13286 438 aa3.02□□□□□ -1.93
PRPF39-207ENST00000554439 ME3Q16798 604 aa3.02□□□□□ -1.93
PRPF39-207ENST00000554439 ANO6Q4KMQ2 910 aa3.02□□□□□ -1.93
PRPF39-207ENST00000554439 USPL1Q5W0Q7 1092 aa3.02□□□□□ -1.93
PRPF39-207ENST00000554439 PRPF40BQ6NWY9 871 aaKnown RBP3.02□□□□□ -1.93
PRPF39-207ENST00000554439 ZNF771Q7L3S4 317 aaPredicted RBP3.02□□□□□ -1.93
PRPF39-207ENST00000554439 PPP1R42Q7Z4L9 355 aa3.02□□□□□ -1.93
PRPF39-207ENST00000554439 TREML1Q86YW5 311 aa3.02□□□□□ -1.93
PRPF39-207ENST00000554439 CCDC144CPQ8IYA2 1237 aa3.02□□□□□ -1.93
PRPF39-207ENST00000554439 RTF1Q92541 710 aaKnown RBP3.02□□□□□ -1.93
PRPF39-207ENST00000554439 IL17RAQ96F46 866 aa3.02□□□□□ -1.93
PRPF39-207ENST00000554439 JAKMIP1Q96N16 626 aaKnown RBP3.02□□□□□ -1.93
PRPF39-207ENST00000554439 PHACTR1Q9C0D0 580 aa3.02□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms