RNA–Protein interactions for RNA: ENST00000554437.5

SCFD1-211, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 688 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-211ENST00000554437 SHKBP1Q8TBC3 707 aa8.22□□□□□ -1.09
SCFD1-211ENST00000554437 TMEM87BQ96K49 555 aa8.22□□□□□ -1.09
SCFD1-211ENST00000554437 FOXQ1Q9C009 403 aa8.22□□□□□ -1.09
SCFD1-211ENST00000554437 ATG3Q9NT62 314 aa8.22□□□□□ -1.09
SCFD1-211ENST00000554437 PRR36Q9H6K5 1346 aa8.22□□□□□ -1.09
SCFD1-211ENST00000554437 LRIG2O94898 1065 aa8.21□□□□□ -1.1
SCFD1-211ENST00000554437 F13BP05160 661 aa8.21□□□□□ -1.1
SCFD1-211ENST00000554437 CLCQ05315 142 aa8.21□□□□□ -1.1
SCFD1-211ENST00000554437 MLECQ14165 292 aa8.21□□□□□ -1.1
SCFD1-211ENST00000554437 SLC6A19Q695T7 634 aa8.21□□□□□ -1.1
SCFD1-211ENST00000554437 GATA6Q92908 595 aa8.21□□□□□ -1.1
SCFD1-211ENST00000554437 ACSF2Q96CM8 615 aaPredicted RBP8.21□□□□□ -1.1
SCFD1-211ENST00000554437 CAPN10Q9HC96 672 aa8.21□□□□□ -1.1
SCFD1-211ENST00000554437 FAM170BA6NMN3 283 aa8.2□□□□□ -1.1
SCFD1-211ENST00000554437 FAM87AP0C7U9 286 aa8.2□□□□□ -1.1
SCFD1-211ENST00000554437 CAP2P40123 477 aa8.2□□□□□ -1.1
SCFD1-211ENST00000554437 GJA8P48165 433 aa8.2□□□□□ -1.1
SCFD1-211ENST00000554437 TMEM201Q5SNT2 666 aa8.2□□□□□ -1.1
SCFD1-211ENST00000554437 PRAMEF13Q5VWM6 474 aa8.2□□□□□ -1.1
SCFD1-211ENST00000554437 OGFOD3Q6PK18 319 aa8.2□□□□□ -1.1
SCFD1-211ENST00000554437 MCATQ8IVS2 390 aaKnown RBP8.2□□□□□ -1.1
SCFD1-211ENST00000554437 MRPL41Q8IXM3 137 aaKnown RBP8.2□□□□□ -1.1
SCFD1-211ENST00000554437 REXO1Q8N1G1 1221 aaKnown RBP8.2□□□□□ -1.1
SCFD1-211ENST00000554437 TOP6BLQ8N6T0 577 aa8.2□□□□□ -1.1
SCFD1-211ENST00000554437 XAGE3Q8WTP9 111 aa8.2□□□□□ -1.1
SCFD1-211ENST00000554437 SPATA32Q96LK8 384 aa8.2□□□□□ -1.1
SCFD1-211ENST00000554437 DPH2Q9BQC3 489 aaPredicted RBP8.2□□□□□ -1.1
SCFD1-211ENST00000554437 OSBPL1AQ9BXW6 950 aa8.2□□□□□ -1.1
SCFD1-211ENST00000554437 PRDM10Q9NQV6 1147 aa8.2□□□□□ -1.1
SCFD1-211ENST00000554437 KLHL3Q9UH77 587 aa8.2□□□□□ -1.1
SCFD1-211ENST00000554437 UPK3BL1B0FP48 263 aa8.19□□□□□ -1.1
SCFD1-211ENST00000554437 UPK3BL2E5RIL1 263 aa8.19□□□□□ -1.1
SCFD1-211ENST00000554437 LEFTY1O75610 366 aa8.19□□□□□ -1.1
SCFD1-211ENST00000554437 ATE1O95260 518 aa8.19□□□□□ -1.1
SCFD1-211ENST00000554437 CST3P01034 146 aaPredicted RBP8.19□□□□□ -1.1
SCFD1-211ENST00000554437 CYP27A1Q02318 531 aa8.19□□□□□ -1.1
SCFD1-211ENST00000554437 GNL2Q13823 731 aaKnown RBP8.19□□□□□ -1.1
SCFD1-211ENST00000554437 DUSP27Q5VZP5 1158 aa8.19□□□□□ -1.1
SCFD1-211ENST00000554437 KRTAP19-1Q8IUB9 90 aa8.19□□□□□ -1.1
SCFD1-211ENST00000554437 MFSD2AQ8NA29 543 aa8.19□□□□□ -1.1
SCFD1-211ENST00000554437 FAM13CQ8NE31 585 aa8.19□□□□□ -1.1
SCFD1-211ENST00000554437 RASGRP4Q8TDF6 673 aa8.19□□□□□ -1.1
SCFD1-211ENST00000554437 DUSP23Q9BVJ7 150 aa8.19□□□□□ -1.1
SCFD1-211ENST00000554437 EHMT1Q9H9B1 1298 aa8.19□□□□□ -1.1
SCFD1-211ENST00000554437 GINM1Q9NU53 330 aa8.19□□□□□ -1.1
SCFD1-211ENST00000554437 EFR3BQ9Y2G0 817 aa8.19□□□□□ -1.1
SCFD1-211ENST00000554437 YARSP54577 528 aaKnown RBP8.18□□□□□ -1.1
SCFD1-211ENST00000554437 CYP27C1Q4G0S4 372 aa8.18□□□□□ -1.1
SCFD1-211ENST00000554437 ZNF765Q7L2R6 523 aa8.18□□□□□ -1.1
SCFD1-211ENST00000554437 ZDHHC13Q8IUH4 622 aa8.18□□□□□ -1.1
SCFD1-211ENST00000554437 FERD3LQ96RJ6 166 aa8.18□□□□□ -1.1
SCFD1-211ENST00000554437 MIPEPQ99797 713 aa8.18□□□□□ -1.1
SCFD1-211ENST00000554437 METTL22Q9BUU2 404 aaPredicted RBP8.18□□□□□ -1.1
SCFD1-211ENST00000554437 CHURC1-FNTBB4DL54 471 aa8.17□□□□□ -1.1
SCFD1-211ENST00000554437 COL9A2Q14055 689 aaPredicted RBP8.17□□□□□ -1.1
SCFD1-211ENST00000554437 FBXW10Q5XX13 1052 aa8.17□□□□□ -1.1
SCFD1-211ENST00000554437 LEMD3Q9Y2U8 911 aa8.17□□□□□ -1.1
SCFD1-211ENST00000554437 DNAJA2O60884 412 aa8.16□□□□□ -1.1
SCFD1-211ENST00000554437 VPS37DQ86XT2 251 aa8.16□□□□□ -1.1
SCFD1-211ENST00000554437 PPT2Q9UMR5 302 aa8.16□□□□□ -1.1
SCFD1-211ENST00000554437 SLC22A31A6NKX4 558 aa8.15□□□□□ -1.1
SCFD1-211ENST00000554437 SLITRK5O94991 958 aa8.15□□□□□ -1.1
SCFD1-211ENST00000554437 TGFB1P01137 390 aa8.15□□□□□ -1.1
SCFD1-211ENST00000554437 NASPP49321 788 aaPredicted RBP8.15□□□□□ -1.1
SCFD1-211ENST00000554437 CPSF6Q16630 551 aaKnown RBP eCLIP8.15□□□□□ -1.1
SCFD1-211ENST00000554437 LRRFIP1Q32MZ4 808 aaKnown RBP8.15□□□□□ -1.1
SCFD1-211ENST00000554437 LETMD1Q6P1Q0 360 aa8.15□□□□□ -1.1
SCFD1-211ENST00000554437 SLFN12Q8IYM2 578 aa8.15□□□□□ -1.1
SCFD1-211ENST00000554437 SEC16BQ96JE7 1060 aa8.15□□□□□ -1.1
SCFD1-211ENST00000554437 ANTXR1Q9H6X2 564 aa8.15□□□□□ -1.1
SCFD1-211ENST00000554437 GMIPQ9P107 970 aa8.15□□□□□ -1.1
SCFD1-211ENST00000554437 PIM2Q9P1W9 311 aa8.15□□□□□ -1.1
SCFD1-211ENST00000554437 PRR19A6NJB7 356 aa8.14□□□□□ -1.11
SCFD1-211ENST00000554437 IMPDH2P12268 514 aa8.14□□□□□ -1.11
SCFD1-211ENST00000554437 SOX9P48436 509 aa8.14□□□□□ -1.11
SCFD1-211ENST00000554437 ZC3H6P61129 1189 aaKnown RBP8.14□□□□□ -1.11
SCFD1-211ENST00000554437 ARSHQ5FYA8 562 aa8.14□□□□□ -1.11
SCFD1-211ENST00000554437 OVOS1Q6IE37 1185 aa8.14□□□□□ -1.11
SCFD1-211ENST00000554437 CCDC81Q6ZN84 652 aa8.14□□□□□ -1.11
SCFD1-211ENST00000554437 PHACTR4Q8IZ21 702 aa8.14□□□□□ -1.11
SCFD1-211ENST00000554437 RIN3Q8TB24 985 aa8.14□□□□□ -1.11
SCFD1-211ENST00000554437 TINF2Q9BSI4 451 aa8.14□□□□□ -1.11
SCFD1-211ENST00000554437 LRRC4CQ9HCJ2 640 aa8.14□□□□□ -1.11
SCFD1-211ENST00000554437 ZNRF3Q9ULT6 936 aa8.14□□□□□ -1.11
SCFD1-211ENST00000554437 TPX2Q9ULW0 747 aaKnown RBP8.14□□□□□ -1.11
SCFD1-211ENST00000554437 CYP26A1O43174 497 aa8.13□□□□□ -1.11
SCFD1-211ENST00000554437 EOMESO95936 686 aa8.13□□□□□ -1.11
SCFD1-211ENST00000554437 RAG1P15918 1043 aa8.13□□□□□ -1.11
SCFD1-211ENST00000554437 ATF4P18848 351 aaPredicted RBP8.13□□□□□ -1.11
SCFD1-211ENST00000554437 CDH24Q86UP0 819 aa8.13□□□□□ -1.11
SCFD1-211ENST00000554437 CYB5D2Q8WUJ1 264 aa8.13□□□□□ -1.11
SCFD1-211ENST00000554437 CPLX3Q8WVH0 158 aa8.13□□□□□ -1.11
SCFD1-211ENST00000554437 CRBNQ96SW2 442 aa8.13□□□□□ -1.11
SCFD1-211ENST00000554437 GTF2IRD1Q9UHL9 959 aa8.13□□□□□ -1.11
SCFD1-211ENST00000554437 NAALADL2Q58DX5 795 aa8.12□□□□□ -1.11
SCFD1-211ENST00000554437 ARHGAP27Q6ZUM4 889 aa8.12□□□□□ -1.11
SCFD1-211ENST00000554437 TMEM40Q8WWA1 233 aa8.12□□□□□ -1.11
SCFD1-211ENST00000554437 ATG4CQ96DT6 458 aa8.12□□□□□ -1.11
SCFD1-211ENST00000554437 CCDC74BQ96LY2 380 aa8.12□□□□□ -1.11
SCFD1-211ENST00000554437 KIF2CQ99661 725 aa8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms