RNA–Protein interactions for RNA: ENST00000553324.5

SHMT2-204, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-204ENST00000553324 STRBPQ96SI9 672 aaKnown RBP18.43■□□□□ 0.54
SHMT2-204ENST00000553324 LNPKQ9C0E8 428 aa18.43■□□□□ 0.54
SHMT2-204ENST00000553324 CABP5Q9NP86 173 aa18.43■□□□□ 0.54
SHMT2-204ENST00000553324 SWAP70Q9UH65 585 aa18.43■□□□□ 0.54
SHMT2-204ENST00000553324 C19orf81C9J6K1 198 aa18.42■□□□□ 0.54
SHMT2-204ENST00000553324 PRKAB2O43741 272 aa18.42■□□□□ 0.54
SHMT2-204ENST00000553324 GABPAQ06546 454 aa18.42■□□□□ 0.54
SHMT2-204ENST00000553324 PABPC4Q13310 644 aaKnown RBP eCLIP18.42■□□□□ 0.54
SHMT2-204ENST00000553324 SH3D19Q5HYK7 790 aa18.42■□□□□ 0.54
SHMT2-204ENST00000553324 FSD1Q9BTV5 496 aa18.42■□□□□ 0.54
SHMT2-204ENST00000553324 ZBTB21Q9ULJ3 1066 aa18.42■□□□□ 0.54
SHMT2-204ENST00000553324 LAMB1P07942 1786 aa18.42■□□□□ 0.54
SHMT2-204ENST00000553324 GDF11O95390 407 aa18.41■□□□□ 0.54
SHMT2-204ENST00000553324 BACE1P56817 501 aa18.41■□□□□ 0.54
SHMT2-204ENST00000553324 KIF22Q14807 665 aa18.41■□□□□ 0.54
SHMT2-204ENST00000553324 ABCB5Q2M3G0 1257 aa18.41■□□□□ 0.54
SHMT2-204ENST00000553324 C17orf99Q6UX52 265 aa18.41■□□□□ 0.54
SHMT2-204ENST00000553324 OSBP2Q969R2 916 aa18.41■□□□□ 0.54
SHMT2-204ENST00000553324 PNMA3Q9UL41 463 aa18.41■□□□□ 0.54
SHMT2-204ENST00000553324 AGTPBP1Q9UPW5 1226 aa18.41■□□□□ 0.54
SHMT2-204ENST00000553324 USP17L10C9JJH3 530 aa18.4■□□□□ 0.54
SHMT2-204ENST00000553324 USP17L12C9JPN9 530 aa18.4■□□□□ 0.54
SHMT2-204ENST00000553324 USP17L21D6R901 530 aa18.4■□□□□ 0.54
SHMT2-204ENST00000553324 GH2P01242 217 aa18.4■□□□□ 0.54
SHMT2-204ENST00000553324 CHGBP05060 677 aa18.4■□□□□ 0.54
SHMT2-204ENST00000553324 C12orf60Q5U649 245 aa18.4■□□□□ 0.54
SHMT2-204ENST00000553324 FBXO46Q6PJ61 603 aaPredicted RBP18.4■□□□□ 0.54
SHMT2-204ENST00000553324 CCDC84Q86UT8 332 aaPredicted RBP18.4■□□□□ 0.54
SHMT2-204ENST00000553324 EFCC1Q9HA90 598 aa18.4■□□□□ 0.54
SHMT2-204ENST00000553324 TMOD4Q9NZQ9 345 aa18.4■□□□□ 0.54
SHMT2-204ENST00000553324 FRMD4AQ9P2Q2 1039 aaPredicted RBP18.4■□□□□ 0.54
SHMT2-204ENST00000553324 GPAA1O43292 621 aa18.39■□□□□ 0.53
SHMT2-204ENST00000553324 GNRH1P01148 92 aa18.39■□□□□ 0.53
SHMT2-204ENST00000553324 SHMT1P34896 483 aa18.39■□□□□ 0.53
SHMT2-204ENST00000553324 CD99L2Q8TCZ2 262 aa18.39■□□□□ 0.53
SHMT2-204ENST00000553324 OSBPL3Q9H4L5 887 aa18.39■□□□□ 0.53
SHMT2-204ENST00000553324 ARPP21Q9UBL0 812 aaPredicted RBP18.39■□□□□ 0.53
SHMT2-204ENST00000553324 TRIM17Q9Y577 477 aa18.39■□□□□ 0.53
SHMT2-204ENST00000553324 PATL2C9JE40 543 aaKnown RBP18.38■□□□□ 0.53
SHMT2-204ENST00000553324 CAPN15O75808 1086 aa18.38■□□□□ 0.53
SHMT2-204ENST00000553324 OSBPP22059 807 aa18.38■□□□□ 0.53
SHMT2-204ENST00000553324 HMGCS2P54868 508 aa18.38■□□□□ 0.53
SHMT2-204ENST00000553324 RAB3GAP1Q15042 981 aa18.38■□□□□ 0.53
SHMT2-204ENST00000553324 SBK1Q52WX2 424 aa18.38■□□□□ 0.53
SHMT2-204ENST00000553324 CTR9Q6PD62 1173 aa18.38■□□□□ 0.53
SHMT2-204ENST00000553324 OTOP1Q7RTM1 612 aa18.38■□□□□ 0.53
SHMT2-204ENST00000553324 CCDC17Q96LX7 622 aa18.38■□□□□ 0.53
SHMT2-204ENST00000553324 NACAP1Q9BZK3 213 aa18.38■□□□□ 0.53
SHMT2-204ENST00000553324 FOCADQ5VW36 1801 aa18.37■□□□□ 0.53
SHMT2-204ENST00000553324 CCDC85CA6NKD9 419 aa18.37■□□□□ 0.53
SHMT2-204ENST00000553324 GSG1L2A8MUP6 293 aa18.37■□□□□ 0.53
SHMT2-204ENST00000553324 APPP05067 770 aa18.37■□□□□ 0.53
SHMT2-204ENST00000553324 USP14P54578 494 aa18.37■□□□□ 0.53
SHMT2-204ENST00000553324 IRX6P78412 446 aaPredicted RBP18.37■□□□□ 0.53
SHMT2-204ENST00000553324 JAG1P78504 1218 aa18.37■□□□□ 0.53
SHMT2-204ENST00000553324 MTMR2Q13614 643 aa18.37■□□□□ 0.53
SHMT2-204ENST00000553324 ZMYM1Q5SVZ6 1142 aa18.37■□□□□ 0.53
SHMT2-204ENST00000553324 USP17L2Q6R6M4 530 aa18.37■□□□□ 0.53
SHMT2-204ENST00000553324 SMCR8Q8TEV9 937 aaPredicted RBP18.37■□□□□ 0.53
SHMT2-204ENST00000553324 CPA4Q9UI42 421 aa18.37■□□□□ 0.53
SHMT2-204ENST00000553324 MPHOSPH10O00566 681 aaKnown RBP18.36■□□□□ 0.53
SHMT2-204ENST00000553324 CYP2C8P10632 490 aa18.36■□□□□ 0.53
SHMT2-204ENST00000553324 CYP2D6P10635 497 aa18.36■□□□□ 0.53
SHMT2-204ENST00000553324 HOXA7P31268 230 aaPredicted RBP18.36■□□□□ 0.53
SHMT2-204ENST00000553324 LACTBP83111 547 aaPredicted RBP18.36■□□□□ 0.53
SHMT2-204ENST00000553324 TMEM179Q6ZVK1 233 aa18.36■□□□□ 0.53
SHMT2-204ENST00000553324 PLEKHM2Q8IWE5 1019 aa18.36■□□□□ 0.53
SHMT2-204ENST00000553324 ZNF287Q9HBT7 754 aa18.36■□□□□ 0.53
SHMT2-204ENST00000553324 DOCK1Q14185 1865 aa18.35■□□□□ 0.53
SHMT2-204ENST00000553324 TRIM6-TRIM34B2RNG4 842 aa18.35■□□□□ 0.53
SHMT2-204ENST00000553324 M0R2C6 588 aa18.35■□□□□ 0.53
SHMT2-204ENST00000553324 HOXD10P28358 340 aa18.35■□□□□ 0.53
SHMT2-204ENST00000553324 GCLCP48506 637 aaPredicted RBP18.35■□□□□ 0.53
SHMT2-204ENST00000553324 CDK8P49336 464 aa18.35■□□□□ 0.53
SHMT2-204ENST00000553324 PRMT2P55345 433 aa18.35■□□□□ 0.53
SHMT2-204ENST00000553324 TREML2Q5T2D2 321 aa18.35■□□□□ 0.53
SHMT2-204ENST00000553324 C16orf86Q6ZW13 317 aa18.35■□□□□ 0.53
SHMT2-204ENST00000553324 HELLSQ9NRZ9 838 aa18.35■□□□□ 0.53
SHMT2-204ENST00000553324 HPS5Q9UPZ3 1129 aa18.35■□□□□ 0.53
SHMT2-204ENST00000553324 ADGRA2Q96PE1 1338 aa18.34■□□□□ 0.53
SHMT2-204ENST00000553324 MYH1P12882 1939 aa18.34■□□□□ 0.53
SHMT2-204ENST00000553324 BCRP11274 1271 aa18.34■□□□□ 0.53
SHMT2-204ENST00000553324 TDO2P48775 406 aa18.34■□□□□ 0.53
SHMT2-204ENST00000553324 SHROOM1Q2M3G4 852 aaPredicted RBP18.34■□□□□ 0.53
SHMT2-204ENST00000553324 IFNL3Q8IZI9 196 aa18.34■□□□□ 0.53
SHMT2-204ENST00000553324 DYNLL2Q96FJ2 89 aa18.34■□□□□ 0.53
SHMT2-204ENST00000553324 FEZ1Q99689 392 aa18.34■□□□□ 0.53
SHMT2-204ENST00000553324 KIAA1683Q9H0B3 1180 aa18.34■□□□□ 0.53
SHMT2-204ENST00000553324 PTPN22Q9Y2R2 807 aa18.34■□□□□ 0.53
SHMT2-204ENST00000553324 CDK5RAP2Q96SN8 1893 aa18.34■□□□□ 0.53
SHMT2-204ENST00000553324 MINDY4BA8MYZ0 360 aa18.33■□□□□ 0.52
SHMT2-204ENST00000553324 IRX3P78415 501 aaPredicted RBP18.33■□□□□ 0.52
SHMT2-204ENST00000553324 RILPL2Q969X0 211 aa18.33■□□□□ 0.52
SHMT2-204ENST00000553324 C12orf42Q96LP6 360 aa18.33■□□□□ 0.52
SHMT2-204ENST00000553324 SEC62Q99442 399 aaKnown RBP18.33■□□□□ 0.52
SHMT2-204ENST00000553324 MKNK2Q9HBH9 465 aa18.33■□□□□ 0.52
SHMT2-204ENST00000553324 EMILIN3Q9NT22 766 aa18.33■□□□□ 0.52
SHMT2-204ENST00000553324 CYP2D7A0A087X1C5 515 aa18.32■□□□□ 0.52
SHMT2-204ENST00000553324 FMNL1O95466 1100 aaPredicted RBP18.32■□□□□ 0.52
SHMT2-204ENST00000553324 SLC3A2P08195 630 aaKnown RBP18.32■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms