RNA–Protein interactions for RNA: ENST00000553289.5

SYNE2-208, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,261 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-208	ENST00000553289	ZAP70	P43403	619 aa		12.85	□□□□□ -0.35
SYNE2-208	ENST00000553289	SMIM23	A6NLE4	172 aa		12.85	□□□□□ -0.35
SYNE2-208	ENST00000553289	ARID4A	P29374	1257 aa	Predicted RBP	12.85	□□□□□ -0.35
SYNE2-208	ENST00000553289	MAGEA1	P43355	309 aa		12.85	□□□□□ -0.35
SYNE2-208	ENST00000553289	GABPB1	Q06547	395 aa	Predicted RBP	12.85	□□□□□ -0.35
SYNE2-208	ENST00000553289	CALCRL	Q16602	461 aa		12.85	□□□□□ -0.35
SYNE2-208	ENST00000553289	MYSM1	Q5VVJ2	828 aa		12.85	□□□□□ -0.35
SYNE2-208	ENST00000553289	ZNF365	Q70YC5	407 aa		12.85	□□□□□ -0.35
SYNE2-208	ENST00000553289	INTS8	Q75QN2	995 aa	Known RBP	12.85	□□□□□ -0.35
SYNE2-208	ENST00000553289	ADGB	Q8N7X0	1667 aa		12.85	□□□□□ -0.35
SYNE2-208	ENST00000553289	CABP7	Q86V35	215 aa		12.84	□□□□□ -0.35
SYNE2-208	ENST00000553289	CDAN1	Q8IWY9	1227 aa		12.84	□□□□□ -0.35
SYNE2-208	ENST00000553289	FAM135B	Q49AJ0	1406 aa		12.84	□□□□□ -0.35
SYNE2-208	ENST00000553289	KDM3A	Q9Y4C1	1321 aa		12.84	□□□□□ -0.35
SYNE2-208	ENST00000553289	PAK2	Q13177	524 aa		12.84	□□□□□ -0.35
SYNE2-208	ENST00000553289	TCIRG1	Q13488	830 aa		12.84	□□□□□ -0.35
SYNE2-208	ENST00000553289	MTMR3	Q13615	1198 aa		12.84	□□□□□ -0.35
SYNE2-208	ENST00000553289	FAM173B	Q6P4H8	233 aa		12.84	□□□□□ -0.35
SYNE2-208	ENST00000553289	TRIML1	Q8N9V2	468 aa		12.84	□□□□□ -0.35
SYNE2-208	ENST00000553289	SUPT20H	Q8NEM7	779 aa		12.84	□□□□□ -0.35
SYNE2-208	ENST00000553289	MAIP1	Q8WWC4	291 aa		12.84	□□□□□ -0.35
SYNE2-208	ENST00000553289	NELFB	Q8WX92	580 aa		12.84	□□□□□ -0.35
SYNE2-208	ENST00000553289	CARD6	Q9BX69	1037 aa		12.84	□□□□□ -0.35
SYNE2-208	ENST00000553289	BCR	P11274	1271 aa		12.84	□□□□□ -0.35
SYNE2-208	ENST00000553289	NBPF14	Q5TI25	921 aa		12.84	□□□□□ -0.35
SYNE2-208	ENST00000553289	DPH6	Q7L8W6	267 aa		12.84	□□□□□ -0.35
SYNE2-208	ENST00000553289	ZFP91	Q96JP5	570 aa	Predicted RBP	12.84	□□□□□ -0.35
SYNE2-208	ENST00000553289	SEC62	Q99442	399 aa	Known RBP	12.84	□□□□□ -0.35
SYNE2-208	ENST00000553289	WWC3	Q9ULE0	1092 aa		12.84	□□□□□ -0.35
SYNE2-208	ENST00000553289	AGTPBP1	Q9UPW5	1226 aa		12.84	□□□□□ -0.35
SYNE2-208	ENST00000553289	A1BG	P04217	495 aa		12.84	□□□□□ -0.35
SYNE2-208	ENST00000553289	HERC4	Q5GLZ8	1057 aa	Predicted RBP	12.84	□□□□□ -0.35
SYNE2-208	ENST00000553289	AATF	Q9NY61	560 aa	Known RBP eCLIP	12.84	□□□□□ -0.35
SYNE2-208	ENST00000553289	GCC2	Q8IWJ2	1684 aa		12.83	□□□□□ -0.35
SYNE2-208	ENST00000553289	CCDC169	A6NNP5	214 aa		12.83	□□□□□ -0.35
SYNE2-208	ENST00000553289	ARL1	P40616	181 aa	Predicted RBP	12.83	□□□□□ -0.35
SYNE2-208	ENST00000553289	SLC1A4	P43007	532 aa		12.83	□□□□□ -0.35
SYNE2-208	ENST00000553289	CTDSPL2	Q05D32	466 aa		12.83	□□□□□ -0.35
SYNE2-208	ENST00000553289	CFAP157	Q5JU67	520 aa		12.83	□□□□□ -0.35
SYNE2-208	ENST00000553289	UTP14C	Q5TAP6	766 aa	Known RBP	12.83	□□□□□ -0.35
SYNE2-208	ENST00000553289	UBE2Q2	Q8WVN8	375 aa		12.83	□□□□□ -0.35
SYNE2-208	ENST00000553289	ZMYND15	Q9H091	742 aa		12.83	□□□□□ -0.35
SYNE2-208	ENST00000553289	FAM204A	Q9H8W3	233 aa		12.83	□□□□□ -0.35
SYNE2-208	ENST00000553289	TMOD4	Q9NZQ9	345 aa		12.83	□□□□□ -0.35
SYNE2-208	ENST00000553289	PFKFB2	O60825	505 aa		12.83	□□□□□ -0.36
SYNE2-208	ENST00000553289	GADD45B	O75293	160 aa	Predicted RBP	12.83	□□□□□ -0.36
SYNE2-208	ENST00000553289	MRPS9	P82933	396 aa	Known RBP	12.83	□□□□□ -0.36
SYNE2-208	ENST00000553289	CFAP221	Q4G0U5	840 aa		12.83	□□□□□ -0.36
SYNE2-208	ENST00000553289	PPFIBP2	Q8ND30	876 aa		12.83	□□□□□ -0.36
SYNE2-208	ENST00000553289	GABPB2	Q8TAK5	448 aa	Predicted RBP	12.83	□□□□□ -0.36
SYNE2-208	ENST00000553289	ZNF496	Q96IT1	587 aa	Predicted RBP	12.83	□□□□□ -0.36
SYNE2-208	ENST00000553289	PICK1	Q9NRD5	415 aa		12.83	□□□□□ -0.36
SYNE2-208	ENST00000553289	JAG2	Q9Y219	1238 aa		12.83	□□□□□ -0.36
SYNE2-208	ENST00000553289	DNAJC21	Q5F1R6	531 aa	Known RBP	12.83	□□□□□ -0.36
SYNE2-208	ENST00000553289	FYB2	Q5VWT5	728 aa		12.83	□□□□□ -0.36
SYNE2-208	ENST00000553289	OTUD7B	Q6GQQ9	843 aa		12.83	□□□□□ -0.36
SYNE2-208	ENST00000553289	NCAPH2	Q6IBW4	605 aa		12.83	□□□□□ -0.36
SYNE2-208	ENST00000553289	TAOK1	Q7L7X3	1001 aa		12.83	□□□□□ -0.36
SYNE2-208	ENST00000553289	PHKB	Q93100	1093 aa		12.83	□□□□□ -0.36
SYNE2-208	ENST00000553289	ZSWIM6	Q9HCJ5	1215 aa		12.83	□□□□□ -0.36
SYNE2-208	ENST00000553289	GOLGA6C	A6NDK9	693 aa		12.83	□□□□□ -0.36
SYNE2-208	ENST00000553289	GOLGA6D	P0CG33	693 aa		12.83	□□□□□ -0.36
SYNE2-208	ENST00000553289	TRPC3	Q13507	836 aa		12.83	□□□□□ -0.36
SYNE2-208	ENST00000553289	ME3	Q16798	604 aa		12.83	□□□□□ -0.36
SYNE2-208	ENST00000553289	GALNT17	Q6IS24	598 aa		12.83	□□□□□ -0.36
SYNE2-208	ENST00000553289	POTED	Q86YR6	584 aa		12.83	□□□□□ -0.36
SYNE2-208	ENST00000553289	REXO1	Q8N1G1	1221 aa	Known RBP	12.83	□□□□□ -0.36
SYNE2-208	ENST00000553289	GOLGA6A	Q9NYA3	693 aa		12.83	□□□□□ -0.36
SYNE2-208	ENST00000553289	TAB2	Q9NYJ8	693 aa		12.83	□□□□□ -0.36
SYNE2-208	ENST00000553289	PRDM1	O75626	825 aa		12.82	□□□□□ -0.36
SYNE2-208	ENST00000553289	PPM1F	P49593	454 aa	Predicted RBP	12.82	□□□□□ -0.36
SYNE2-208	ENST00000553289	PPARA	Q07869	468 aa		12.82	□□□□□ -0.36
SYNE2-208	ENST00000553289	SFMBT2	Q5VUG0	894 aa		12.82	□□□□□ -0.36
SYNE2-208	ENST00000553289	PSMD1	Q99460	953 aa		12.82	□□□□□ -0.36
SYNE2-208	ENST00000553289	KIAA1468	Q9P260	1216 aa		12.82	□□□□□ -0.36
SYNE2-208	ENST00000553289	JAK2	O60674	1132 aa		12.82	□□□□□ -0.36
SYNE2-208	ENST00000553289	PC	P11498	1178 aa	Known RBP	12.82	□□□□□ -0.36
SYNE2-208	ENST00000553289	U2AF2	P26368	475 aa	Known RBP eCLIP	12.82	□□□□□ -0.36
SYNE2-208	ENST00000553289	SDAD1	Q9NVU7	687 aa	Known RBP eCLIP	12.82	□□□□□ -0.36
SYNE2-208	ENST00000553289	ARHGEF5	Q12774	1597 aa		12.82	□□□□□ -0.36
SYNE2-208	ENST00000553289	RGS12	O14924	1447 aa		12.82	□□□□□ -0.36
SYNE2-208	ENST00000553289	PDE6B	P35913	854 aa		12.82	□□□□□ -0.36
SYNE2-208	ENST00000553289	KLHL30	Q0D2K2	578 aa		12.82	□□□□□ -0.36
SYNE2-208	ENST00000553289	PPFIA1	Q13136	1202 aa		12.82	□□□□□ -0.36
SYNE2-208	ENST00000553289	IWS1	Q96ST2	819 aa		12.82	□□□□□ -0.36
SYNE2-208	ENST00000553289	USP44	Q9H0E7	712 aa		12.82	□□□□□ -0.36
SYNE2-208	ENST00000553289	ATP8A2	Q9NTI2	1148 aa		12.82	□□□□□ -0.36
SYNE2-208	ENST00000553289	DAAM2	Q86T65	1068 aa		12.82	□□□□□ -0.36
SYNE2-208	ENST00000553289	ZNF654	Q8IZM8	581 aa		12.82	□□□□□ -0.36
SYNE2-208	ENST00000553289	VTI1A	Q96AJ9	217 aa		12.82	□□□□□ -0.36
SYNE2-208	ENST00000553289	ABCA5	Q8WWZ7	1642 aa		12.82	□□□□□ -0.36
SYNE2-208	ENST00000553289	CHMP2A	O43633	222 aa		12.82	□□□□□ -0.36
SYNE2-208	ENST00000553289	CTSW	P56202	376 aa		12.82	□□□□□ -0.36
SYNE2-208	ENST00000553289	RASSF4	Q9H2L5	321 aa		12.82	□□□□□ -0.36
SYNE2-208	ENST00000553289	PLCB1	Q9NQ66	1216 aa		12.82	□□□□□ -0.36
SYNE2-208	ENST00000553289	MAPK8IP1	Q9UQF2	711 aa		12.82	□□□□□ -0.36
SYNE2-208	ENST00000553289	ZMYM6	O95789	1325 aa		12.81	□□□□□ -0.36
SYNE2-208	ENST00000553289	NDUFAB1	O14561	156 aa		12.81	□□□□□ -0.36
SYNE2-208	ENST00000553289	STK10	O94804	968 aa	Known RBP	12.81	□□□□□ -0.36
SYNE2-208	ENST00000553289	VIM	P08670	466 aa	Known RBP	12.81	□□□□□ -0.36

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