RNA–Protein interactions for RNA: ENST00000553145.1

HDAC4-217, Transcript of histone deacetylase 4, humanhuman

TSL 4

Gene HDAC4, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-217ENST00000553145 SHMT1P34896 483 aa22.63■■□□□ 1.21
HDAC4-217ENST00000553145 PDE1AP54750 535 aa22.63■■□□□ 1.21
HDAC4-217ENST00000553145 SP3Q02447 781 aa22.63■■□□□ 1.21
HDAC4-217ENST00000553145 GABPAQ06546 454 aa22.63■■□□□ 1.21
HDAC4-217ENST00000553145 FASTKD5Q7L8L6 764 aaKnown RBP22.63■■□□□ 1.21
HDAC4-217ENST00000553145 ZNF280CQ8ND82 737 aa22.63■■□□□ 1.21
HDAC4-217ENST00000553145 LOC285556D6RIA3 1793 aa22.63■■□□□ 1.21
HDAC4-217ENST00000553145 BAZ2AQ9UIF9 1905 aaKnown RBP22.63■■□□□ 1.21
HDAC4-217ENST00000553145 APPBP2Q92624 585 aa22.62■■□□□ 1.21
HDAC4-217ENST00000553145 TBC1D2Q9BYX2 928 aa22.62■■□□□ 1.21
HDAC4-217ENST00000553145 ATP8A2Q9NTI2 1148 aa22.62■■□□□ 1.21
HDAC4-217ENST00000553145 SLC4A4Q9Y6R1 1079 aa22.62■■□□□ 1.21
HDAC4-217ENST00000553145 SMIM22K7EJ46 135 aa22.61■■□□□ 1.21
HDAC4-217ENST00000553145 ZFYP08048 801 aaPredicted RBP22.61■■□□□ 1.21
HDAC4-217ENST00000553145 CYP2C8P10632 490 aa22.61■■□□□ 1.21
HDAC4-217ENST00000553145 ERO1AQ96HE7 468 aa22.61■■□□□ 1.21
HDAC4-217ENST00000553145 STRBPQ96SI9 672 aaKnown RBP22.61■■□□□ 1.21
HDAC4-217ENST00000553145 WDR18Q9BV38 432 aa22.61■■□□□ 1.21
HDAC4-217ENST00000553145 ZSWIM8A7E2V4 1837 aa22.61■■□□□ 1.21
HDAC4-217ENST00000553145 CYP2D7A0A087X1C5 515 aa22.6■■□□□ 1.21
HDAC4-217ENST00000553145 M0R2C6 588 aa22.6■■□□□ 1.21
HDAC4-217ENST00000553145 GH2P01242 217 aa22.6■■□□□ 1.21
HDAC4-217ENST00000553145 HMGCS2P54868 508 aa22.6■■□□□ 1.21
HDAC4-217ENST00000553145 TREML2Q5T2D2 321 aa22.6■■□□□ 1.21
HDAC4-217ENST00000553145 C17orf99Q6UX52 265 aa22.6■■□□□ 1.21
HDAC4-217ENST00000553145 OTOP1Q7RTM1 612 aa22.6■■□□□ 1.21
HDAC4-217ENST00000553145 FSD1Q9BTV5 496 aa22.6■■□□□ 1.21
HDAC4-217ENST00000553145 AS3MTQ9HBK9 375 aa22.6■■□□□ 1.21
HDAC4-217ENST00000553145 GINM1Q9NU53 330 aa22.6■■□□□ 1.21
HDAC4-217ENST00000553145 CPA4Q9UI42 421 aa22.6■■□□□ 1.21
HDAC4-217ENST00000553145 NUCB1Q02818 461 aa22.59■■□□□ 1.21
HDAC4-217ENST00000553145 CERKLQ49MI3 558 aaPredicted RBP22.59■■□□□ 1.21
HDAC4-217ENST00000553145 CHD1LQ86WJ1 897 aa22.59■■□□□ 1.21
HDAC4-217ENST00000553145 SLC44A5Q8NCS7 719 aa22.59■■□□□ 1.21
HDAC4-217ENST00000553145 DYNLL2Q96FJ2 89 aa22.59■■□□□ 1.21
HDAC4-217ENST00000553145 SEC62Q99442 399 aaKnown RBP22.59■■□□□ 1.21
HDAC4-217ENST00000553145 PARK7Q99497 189 aaKnown RBP22.59■■□□□ 1.21
HDAC4-217ENST00000553145 AGTPBP1Q9UPW5 1226 aa22.59■■□□□ 1.21
HDAC4-217ENST00000553145 TRIM17Q9Y577 477 aa22.59■■□□□ 1.21
HDAC4-217ENST00000553145 USP17L12C9JPN9 530 aa22.58■■□□□ 1.21
HDAC4-217ENST00000553145 USP17L21D6R901 530 aa22.58■■□□□ 1.21
HDAC4-217ENST00000553145 MTMR2Q13614 643 aa22.58■■□□□ 1.21
HDAC4-217ENST00000553145 PKN2Q16513 984 aaKnown RBP22.58■■□□□ 1.21
HDAC4-217ENST00000553145 SH3D19Q5HYK7 790 aa22.58■■□□□ 1.21
HDAC4-217ENST00000553145 PROCA1Q8NCQ7 364 aaPredicted RBP22.58■■□□□ 1.21
HDAC4-217ENST00000553145 SLC45A1Q9Y2W3 748 aa22.58■■□□□ 1.21
HDAC4-217ENST00000553145 CCDC85CA6NKD9 419 aa22.57■■□□□ 1.2
HDAC4-217ENST00000553145 GSG1L2A8MUP6 293 aa22.57■■□□□ 1.2
HDAC4-217ENST00000553145 GPAA1O43292 621 aa22.57■■□□□ 1.2
HDAC4-217ENST00000553145 C12orf60Q5U649 245 aa22.57■■□□□ 1.2
HDAC4-217ENST00000553145 CTR9Q6PD62 1173 aa22.57■■□□□ 1.2
HDAC4-217ENST00000553145 ARHGAP39Q9C0H5 1083 aa22.57■■□□□ 1.2
HDAC4-217ENST00000553145 GUCY1A2P33402 732 aa22.56■■□□□ 1.2
HDAC4-217ENST00000553145 BACE1P56817 501 aa22.56■■□□□ 1.2
HDAC4-217ENST00000553145 ABCB5Q2M3G0 1257 aa22.56■■□□□ 1.2
HDAC4-217ENST00000553145 LRRFIP1Q32MZ4 808 aaKnown RBP22.56■■□□□ 1.2
HDAC4-217ENST00000553145 ZMYM1Q5SVZ6 1142 aa22.56■■□□□ 1.2
HDAC4-217ENST00000553145 FBXO46Q6PJ61 603 aaPredicted RBP22.56■■□□□ 1.2
HDAC4-217ENST00000553145 EPB41L4AQ9HCS5 686 aaPredicted RBP22.56■■□□□ 1.2
HDAC4-217ENST00000553145 HPS5Q9UPZ3 1129 aa22.56■■□□□ 1.2
HDAC4-217ENST00000553145 USP17L10C9JJH3 530 aa22.55■■□□□ 1.2
HDAC4-217ENST00000553145 LACTBP83111 547 aaPredicted RBP22.55■■□□□ 1.2
HDAC4-217ENST00000553145 EVI5LQ96CN4 794 aa22.55■■□□□ 1.2
HDAC4-217ENST00000553145 DDRGK1Q96HY6 314 aa22.55■■□□□ 1.2
HDAC4-217ENST00000553145 EFCC1Q9HA90 598 aa22.55■■□□□ 1.2
HDAC4-217ENST00000553145 ECM2O94769 699 aaPredicted RBP22.54■■□□□ 1.2
HDAC4-217ENST00000553145 BCRP11274 1271 aa22.54■■□□□ 1.2
HDAC4-217ENST00000553145 CTGFP29279 349 aa22.54■■□□□ 1.2
HDAC4-217ENST00000553145 RAB3GAP1Q15042 981 aa22.54■■□□□ 1.2
HDAC4-217ENST00000553145 PLEKHM2Q8IWE5 1019 aa22.54■■□□□ 1.2
HDAC4-217ENST00000553145 SWAP70Q9UH65 585 aa22.54■■□□□ 1.2
HDAC4-217ENST00000553145 SEPT2Q15019 361 aa22.53■■□□□ 1.2
HDAC4-217ENST00000553145 C16orf86Q6ZW13 317 aa22.53■■□□□ 1.2
HDAC4-217ENST00000553145 CABP5Q9NP86 173 aa22.53■■□□□ 1.2
HDAC4-217ENST00000553145 ARPP21Q9UBL0 812 aaPredicted RBP22.53■■□□□ 1.2
HDAC4-217ENST00000553145 MYH8P13535 1937 aa22.53■■□□□ 1.2
HDAC4-217ENST00000553145 C19orf81C9J6K1 198 aa22.52■■□□□ 1.2
HDAC4-217ENST00000553145 AKR1B1P15121 316 aa22.52■■□□□ 1.2
HDAC4-217ENST00000553145 CDK8P49336 464 aa22.52■■□□□ 1.2
HDAC4-217ENST00000553145 SBK1Q52WX2 424 aa22.52■■□□□ 1.2
HDAC4-217ENST00000553145 GIMAP6Q6P9H5 292 aa22.52■■□□□ 1.2
HDAC4-217ENST00000553145 AMOTL1Q8IY63 956 aa22.52■■□□□ 1.2
HDAC4-217ENST00000553145 ACER1Q8TDN7 264 aa22.52■■□□□ 1.2
HDAC4-217ENST00000553145 EMILIN3Q9NT22 766 aa22.52■■□□□ 1.2
HDAC4-217ENST00000553145 TMOD4Q9NZQ9 345 aa22.52■■□□□ 1.2
HDAC4-217ENST00000553145 PTPN22Q9Y2R2 807 aa22.52■■□□□ 1.2
HDAC4-217ENST00000553145 MPHOSPH10O00566 681 aaKnown RBP22.51■■□□□ 1.19
HDAC4-217ENST00000553145 GNAT2P19087 354 aa22.51■■□□□ 1.19
HDAC4-217ENST00000553145 ZYXQ15942 572 aaKnown RBP22.51■■□□□ 1.19
HDAC4-217ENST00000553145 CCDC129Q6ZRS4 1044 aa22.51■■□□□ 1.19
HDAC4-217ENST00000553145 SMCR8Q8TEV9 937 aaPredicted RBP22.51■■□□□ 1.19
HDAC4-217ENST00000553145 ASCC2Q9H1I8 757 aaPredicted RBP22.51■■□□□ 1.19
HDAC4-217ENST00000553145 OSBPL3Q9H4L5 887 aa22.51■■□□□ 1.19
HDAC4-217ENST00000553145 PNMA3Q9UL41 463 aa22.51■■□□□ 1.19
HDAC4-217ENST00000553145 TAOK2Q9UL54 1235 aa22.51■■□□□ 1.19
HDAC4-217ENST00000553145 KIF22Q14807 665 aa22.5■■□□□ 1.19
HDAC4-217ENST00000553145 USP17L2Q6R6M4 530 aa22.5■■□□□ 1.19
HDAC4-217ENST00000553145 FEZ1Q99689 392 aa22.5■■□□□ 1.19
HDAC4-217ENST00000553145 ROBO3Q96MS0 1386 aa22.5■■□□□ 1.19
HDAC4-217ENST00000553145 PATL2C9JE40 543 aaKnown RBP22.49■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms