RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 TSKSQ9UJT2 592 aa16.9■□□□□ 0.3
PTCH1-226ENST00000553011 ZHX2Q9Y6X8 837 aa16.9■□□□□ 0.3
PTCH1-226ENST00000553011 CASP8AP2Q9UKL3 1982 aa16.89■□□□□ 0.3
PTCH1-226ENST00000553011 GTF2A2P52657 109 aa16.89■□□□□ 0.29
PTCH1-226ENST00000553011 SBK1Q52WX2 424 aa16.89■□□□□ 0.29
PTCH1-226ENST00000553011 CWC27Q6UX04 472 aaKnown RBP16.89■□□□□ 0.29
PTCH1-226ENST00000553011 BRI3BPQ8WY22 251 aa16.89■□□□□ 0.29
PTCH1-226ENST00000553011 KCNH4Q9UQ05 1017 aa16.89■□□□□ 0.29
PTCH1-226ENST00000553011 CCDC171Q6TFL3 1326 aa16.89■□□□□ 0.29
PTCH1-226ENST00000553011 CCL15-CCL14A0A0B4J2E2 113 aa16.88■□□□□ 0.29
PTCH1-226ENST00000553011 MINDY4BA8MYZ0 360 aa16.88■□□□□ 0.29
PTCH1-226ENST00000553011 HIP1O00291 1037 aa16.88■□□□□ 0.29
PTCH1-226ENST00000553011 IGF2BP3O00425 579 aaKnown RBP eCLIP16.88■□□□□ 0.29
PTCH1-226ENST00000553011 TRPA1O75762 1119 aa16.88■□□□□ 0.29
PTCH1-226ENST00000553011 SNAPC2Q13487 334 aa16.88■□□□□ 0.29
PTCH1-226ENST00000553011 CCL15Q16663 113 aa16.88■□□□□ 0.29
PTCH1-226ENST00000553011 CERKLQ49MI3 558 aaPredicted RBP16.88■□□□□ 0.29
PTCH1-226ENST00000553011 PTPN18Q99952 460 aa16.88■□□□□ 0.29
PTCH1-226ENST00000553011 NACAP1Q9BZK3 213 aa16.88■□□□□ 0.29
PTCH1-226ENST00000553011 RNF186Q9NXI6 227 aa16.88■□□□□ 0.29
PTCH1-226ENST00000553011 ZBTB21Q9ULJ3 1066 aa16.88■□□□□ 0.29
PTCH1-226ENST00000553011 AFG3L2Q9Y4W6 797 aa16.88■□□□□ 0.29
PTCH1-226ENST00000553011 TESPA1A2RU30 521 aaPredicted RBP16.87■□□□□ 0.29
PTCH1-226ENST00000553011 GH2P01242 217 aa16.87■□□□□ 0.29
PTCH1-226ENST00000553011 ASNSP08243 561 aa16.87■□□□□ 0.29
PTCH1-226ENST00000553011 CDK8P49336 464 aa16.87■□□□□ 0.29
PTCH1-226ENST00000553011 INHBEP58166 350 aa16.87■□□□□ 0.29
PTCH1-226ENST00000553011 C16orf86Q6ZW13 317 aa16.87■□□□□ 0.29
PTCH1-226ENST00000553011 IFNL1Q8IU54 200 aa16.87■□□□□ 0.29
PTCH1-226ENST00000553011 STK11IPQ8N1F8 1099 aa16.87■□□□□ 0.29
PTCH1-226ENST00000553011 NAPBQ9H115 298 aa16.87■□□□□ 0.29
PTCH1-226ENST00000553011 TRIM75PA6NK02 468 aa16.86■□□□□ 0.29
PTCH1-226ENST00000553011 USP17L5A8MUK1 530 aa16.86■□□□□ 0.29
PTCH1-226ENST00000553011 CXCL11O14625 94 aa16.86■□□□□ 0.29
PTCH1-226ENST00000553011 CETPP11597 493 aa16.86■□□□□ 0.29
PTCH1-226ENST00000553011 ABCB5Q2M3G0 1257 aa16.86■□□□□ 0.29
PTCH1-226ENST00000553011 IL25Q9H293 177 aa16.86■□□□□ 0.29
PTCH1-226ENST00000553011 SWAP70Q9UH65 585 aa16.86■□□□□ 0.29
PTCH1-226ENST00000553011 ROBO3Q96MS0 1386 aa16.86■□□□□ 0.29
PTCH1-226ENST00000553011 LOC285556D6RIA3 1793 aa16.85■□□□□ 0.29
PTCH1-226ENST00000553011 CA12O43570 354 aa16.85■□□□□ 0.29
PTCH1-226ENST00000553011 HSPD1P10809 573 aaKnown RBP16.85■□□□□ 0.29
PTCH1-226ENST00000553011 HSPA8P11142 646 aaKnown RBP16.85■□□□□ 0.29
PTCH1-226ENST00000553011 CHMLP26374 656 aa16.85■□□□□ 0.29
PTCH1-226ENST00000553011 SPP2Q13103 211 aa16.85■□□□□ 0.29
PTCH1-226ENST00000553011 GINM1Q9NU53 330 aa16.85■□□□□ 0.29
PTCH1-226ENST00000553011 LAMA4Q16363 1823 aa16.84■□□□□ 0.29
PTCH1-226ENST00000553011 GREB1LQ9C091 1923 aaPredicted RBP16.84■□□□□ 0.29
PTCH1-226ENST00000553011 BTBD19C9JJ37 291 aa16.84■□□□□ 0.29
PTCH1-226ENST00000553011 AKR1B1P15121 316 aa16.84■□□□□ 0.29
PTCH1-226ENST00000553011 GUCY1A2P33402 732 aa16.84■□□□□ 0.29
PTCH1-226ENST00000553011 CTCFP49711 727 aaPredicted RBP16.84■□□□□ 0.29
PTCH1-226ENST00000553011 MFAP1P55081 439 aaKnown RBP16.84■□□□□ 0.29
PTCH1-226ENST00000553011 PPARAQ07869 468 aa16.84■□□□□ 0.29
PTCH1-226ENST00000553011 MOGSQ13724 837 aa16.84■□□□□ 0.29
PTCH1-226ENST00000553011 ALX1Q15699 326 aa16.84■□□□□ 0.29
PTCH1-226ENST00000553011 FAM43AQ8N2R8 423 aa16.84■□□□□ 0.29
PTCH1-226ENST00000553011 ZNF280CQ8ND82 737 aa16.84■□□□□ 0.29
PTCH1-226ENST00000553011 CABP5Q9NP86 173 aa16.84■□□□□ 0.29
PTCH1-226ENST00000553011 SAGE1Q9NXZ1 904 aa16.84■□□□□ 0.29
PTCH1-226ENST00000553011 TAOK2Q9UL54 1235 aa16.84■□□□□ 0.29
PTCH1-226ENST00000553011 A0A0G2JLL6 359 aaPredicted RBP16.83■□□□□ 0.28
PTCH1-226ENST00000553011 MPHOSPH10O00566 681 aaKnown RBP16.83■□□□□ 0.28
PTCH1-226ENST00000553011 TBC1D8O95759 1140 aa16.83■□□□□ 0.28
PTCH1-226ENST00000553011 FGAP02671 866 aa16.83■□□□□ 0.28
PTCH1-226ENST00000553011 LBX1P52954 281 aa16.83■□□□□ 0.28
PTCH1-226ENST00000553011 SEPT2Q15019 361 aa16.83■□□□□ 0.28
PTCH1-226ENST00000553011 RAB3GAP1Q15042 981 aa16.83■□□□□ 0.28
PTCH1-226ENST00000553011 BMP2KLQ5H9B9 411 aa16.83■□□□□ 0.28
PTCH1-226ENST00000553011 PRRT2Q7Z6L0 340 aaPredicted RBP16.83■□□□□ 0.28
PTCH1-226ENST00000553011 WDR18Q9BV38 432 aa16.83■□□□□ 0.28
PTCH1-226ENST00000553011 R3HDMLQ9H3Y0 253 aa16.83■□□□□ 0.28
PTCH1-226ENST00000553011 AS3MTQ9HBK9 375 aa16.83■□□□□ 0.28
PTCH1-226ENST00000553011 PRDM1O75626 825 aa16.82■□□□□ 0.28
PTCH1-226ENST00000553011 ALDH1A1P00352 501 aa16.82■□□□□ 0.28
PTCH1-226ENST00000553011 HMGCS2P54868 508 aa16.82■□□□□ 0.28
PTCH1-226ENST00000553011 CTDSPL2Q05D32 466 aa16.82■□□□□ 0.28
PTCH1-226ENST00000553011 DGKZQ13574 1117 aa16.82■□□□□ 0.28
PTCH1-226ENST00000553011 OTUD7BQ6GQQ9 843 aa16.82■□□□□ 0.28
PTCH1-226ENST00000553011 GADL1Q6ZQY3 521 aa16.82■□□□□ 0.28
PTCH1-226ENST00000553011 TBC1D2Q9BYX2 928 aa16.82■□□□□ 0.28
PTCH1-226ENST00000553011 MYH4Q9Y623 1939 aa16.82■□□□□ 0.28
PTCH1-226ENST00000553011 RAD50Q92878 1312 aa16.81■□□□□ 0.28
PTCH1-226ENST00000553011 RASA1P20936 1047 aa16.81■□□□□ 0.28
PTCH1-226ENST00000553011 MTMR2Q13614 643 aa16.81■□□□□ 0.28
PTCH1-226ENST00000553011 GPAT2Q6NUI2 795 aa16.81■□□□□ 0.28
PTCH1-226ENST00000553011 CLEC10AQ8IUN9 316 aa16.81■□□□□ 0.28
PTCH1-226ENST00000553011 RUFY2Q8WXA3 655 aa16.81■□□□□ 0.28
PTCH1-226ENST00000553011 CCDC17Q96LX7 622 aa16.81■□□□□ 0.28
PTCH1-226ENST00000553011 MKNK2Q9HBH9 465 aa16.81■□□□□ 0.28
PTCH1-226ENST00000553011 TACC3Q9Y6A5 838 aa16.81■□□□□ 0.28
PTCH1-226ENST00000553011 ZMYM6O95789 1325 aa16.8■□□□□ 0.28
PTCH1-226ENST00000553011 USP17L10C9JJH3 530 aa16.8■□□□□ 0.28
PTCH1-226ENST00000553011 BACE1P56817 501 aa16.8■□□□□ 0.28
PTCH1-226ENST00000553011 CRHR2Q13324 411 aa16.8■□□□□ 0.28
PTCH1-226ENST00000553011 TAF1CQ15572 869 aaPredicted RBP16.8■□□□□ 0.28
PTCH1-226ENST00000553011 TMEM179Q6ZVK1 233 aa16.8■□□□□ 0.28
PTCH1-226ENST00000553011 FASTKD5Q7L8L6 764 aaKnown RBP16.8■□□□□ 0.28
PTCH1-226ENST00000553011 ANKRD23Q86SG2 305 aa16.8■□□□□ 0.28
PTCH1-226ENST00000553011 ACER1Q8TDN7 264 aa16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms