RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 ERC2O15083 957 aa8.92□□□□□ -0.98
LIMA1-216ENST00000552909 USP2O75604 605 aaPredicted RBP8.92□□□□□ -0.98
LIMA1-216ENST00000552909 WDHD1O75717 1129 aaPredicted RBP8.92□□□□□ -0.98
LIMA1-216ENST00000552909 CHGBP05060 677 aa8.92□□□□□ -0.98
LIMA1-216ENST00000552909 NF2P35240 595 aa8.92□□□□□ -0.98
LIMA1-216ENST00000552909 ZNF157P51786 506 aaPredicted RBP8.92□□□□□ -0.98
LIMA1-216ENST00000552909 FOXD4L6Q3SYB3 417 aaPredicted RBP8.92□□□□□ -0.98
LIMA1-216ENST00000552909 SLFNL1Q499Z3 407 aa8.92□□□□□ -0.98
LIMA1-216ENST00000552909 NAA16Q6N069 864 aaPredicted RBP8.92□□□□□ -0.98
LIMA1-216ENST00000552909 RGMBQ6NW40 437 aa8.92□□□□□ -0.98
LIMA1-216ENST00000552909 FOXD4L3Q6VB84 417 aaPredicted RBP8.92□□□□□ -0.98
LIMA1-216ENST00000552909 TMEM87AQ8NBN3 555 aa8.92□□□□□ -0.98
LIMA1-216ENST00000552909 CCDC112Q8NEF3 446 aa8.92□□□□□ -0.98
LIMA1-216ENST00000552909 ZNF397Q8NF99 534 aaPredicted RBP8.92□□□□□ -0.98
LIMA1-216ENST00000552909 PI4K2BQ8TCG2 481 aa8.92□□□□□ -0.98
LIMA1-216ENST00000552909 HHIPL1Q96JK4 782 aa8.92□□□□□ -0.98
LIMA1-216ENST00000552909 TMOD2Q9NZR1 351 aa8.92□□□□□ -0.98
LIMA1-216ENST00000552909 PAPPA2Q9BXP8 1791 aa8.92□□□□□ -0.98
LIMA1-216ENST00000552909 GLRX3O76003 335 aaKnown RBP8.92□□□□□ -0.98
LIMA1-216ENST00000552909 CAPN2P17655 700 aa8.92□□□□□ -0.98
LIMA1-216ENST00000552909 ATP5JP18859 108 aa8.92□□□□□ -0.98
LIMA1-216ENST00000552909 TNNI2P48788 182 aa8.92□□□□□ -0.98
LIMA1-216ENST00000552909 FKBP1BP68106 108 aa8.92□□□□□ -0.98
LIMA1-216ENST00000552909 SUPT20HL1Q3ZLR7 823 aa8.92□□□□□ -0.98
LIMA1-216ENST00000552909 FKBP1CQ5VVH2 108 aa8.92□□□□□ -0.98
LIMA1-216ENST00000552909 FAM83AQ86UY5 434 aa8.92□□□□□ -0.98
LIMA1-216ENST00000552909 CLMNQ96JQ2 1002 aa8.92□□□□□ -0.98
LIMA1-216ENST00000552909 AATFQ9NY61 560 aaKnown RBP eCLIP8.92□□□□□ -0.98
LIMA1-216ENST00000552909 PPP1R12BO60237 982 aaPredicted RBP8.91□□□□□ -0.98
LIMA1-216ENST00000552909 TNNT1P13805 278 aa8.91□□□□□ -0.98
LIMA1-216ENST00000552909 PICALMQ13492 652 aa8.91□□□□□ -0.98
LIMA1-216ENST00000552909 LDLRAD1Q5T700 205 aa8.91□□□□□ -0.98
LIMA1-216ENST00000552909 MIGA2Q7L4E1 593 aa8.91□□□□□ -0.98
LIMA1-216ENST00000552909 SH3BP5LQ7L8J4 393 aa8.91□□□□□ -0.98
LIMA1-216ENST00000552909 SLF2Q8IX21 1173 aa8.91□□□□□ -0.98
LIMA1-216ENST00000552909 MAGEB6Q8N7X4 407 aa8.91□□□□□ -0.98
LIMA1-216ENST00000552909 MIGA1Q8NAN2 632 aa8.91□□□□□ -0.98
LIMA1-216ENST00000552909 SH3RF3Q8TEJ3 882 aaPredicted RBP8.91□□□□□ -0.98
LIMA1-216ENST00000552909 PPIL4Q8WUA2 492 aaKnown RBP eCLIP8.91□□□□□ -0.98
LIMA1-216ENST00000552909 FAM151AQ8WW52 585 aa8.91□□□□□ -0.98
LIMA1-216ENST00000552909 C16orf45Q96MC5 204 aaPredicted RBP8.91□□□□□ -0.98
LIMA1-216ENST00000552909 TRIM34Q9BYJ4 488 aa8.91□□□□□ -0.98
LIMA1-216ENST00000552909 LDHCP07864 332 aa8.9□□□□□ -0.98
LIMA1-216ENST00000552909 CYP7A1P22680 504 aa8.9□□□□□ -0.98
LIMA1-216ENST00000552909 ECE1P42892 770 aa8.9□□□□□ -0.98
LIMA1-216ENST00000552909 UBE2HP62256 183 aa8.9□□□□□ -0.98
LIMA1-216ENST00000552909 DYNLL1P63167 89 aaKnown RBP8.9□□□□□ -0.98
LIMA1-216ENST00000552909 GSTO1P78417 241 aa8.9□□□□□ -0.98
LIMA1-216ENST00000552909 MKRN3Q13064 507 aaKnown RBP8.9□□□□□ -0.98
LIMA1-216ENST00000552909 ARMC9Q7Z3E5 817 aa8.9□□□□□ -0.98
LIMA1-216ENST00000552909 HAUS7Q99871 368 aa8.9□□□□□ -0.98
LIMA1-216ENST00000552909 IDI2Q9BXS1 227 aa8.9□□□□□ -0.98
LIMA1-216ENST00000552909 PAG1Q9NWQ8 432 aa8.9□□□□□ -0.98
LIMA1-216ENST00000552909 RFX7Q2KHR2 1363 aa8.9□□□□□ -0.98
LIMA1-216ENST00000552909 DOCK2Q92608 1830 aa8.9□□□□□ -0.98
LIMA1-216ENST00000552909 DDTLA6NHG4 134 aaPredicted RBP8.9□□□□□ -0.98
LIMA1-216ENST00000552909 AP5Z1O43299 807 aa8.9□□□□□ -0.98
LIMA1-216ENST00000552909 HSPA1AP0DMV8 641 aaKnown RBP8.9□□□□□ -0.98
LIMA1-216ENST00000552909 HSPA1BP0DMV9 641 aaKnown RBP8.9□□□□□ -0.98
LIMA1-216ENST00000552909 PTGS1P23219 599 aa8.9□□□□□ -0.98
LIMA1-216ENST00000552909 MAP3K11Q16584 847 aa8.9□□□□□ -0.98
LIMA1-216ENST00000552909 SLC9C2Q5TAH2 1124 aa8.9□□□□□ -0.98
LIMA1-216ENST00000552909 RASAL3Q86YV0 1011 aa8.9□□□□□ -0.98
LIMA1-216ENST00000552909 FUCA2Q9BTY2 467 aa8.9□□□□□ -0.98
LIMA1-216ENST00000552909 SLC10A3P09131 477 aa8.89□□□□□ -0.99
LIMA1-216ENST00000552909 MCCP23508 829 aa8.89□□□□□ -0.99
LIMA1-216ENST00000552909 PPP4CP60510 307 aa8.89□□□□□ -0.99
LIMA1-216ENST00000552909 MAP3K12Q12852 859 aa8.89□□□□□ -0.99
LIMA1-216ENST00000552909 NAA30Q147X3 362 aaPredicted RBP8.89□□□□□ -0.99
LIMA1-216ENST00000552909 PPP1R3FQ6ZSY5 799 aaPredicted RBP8.89□□□□□ -0.99
LIMA1-216ENST00000552909 CNKSR2Q8WXI2 1034 aa8.89□□□□□ -0.99
LIMA1-216ENST00000552909 WBP1LQ9NX94 342 aa8.89□□□□□ -0.99
LIMA1-216ENST00000552909 FAM53CQ9NYF3 392 aa8.89□□□□□ -0.99
LIMA1-216ENST00000552909 TCRBV5S4A2TA0A5A2 114 aa8.89□□□□□ -0.99
LIMA1-216ENST00000552909 PDE6AP16499 860 aa8.89□□□□□ -0.99
LIMA1-216ENST00000552909 MAP2K2P36507 400 aa8.89□□□□□ -0.99
LIMA1-216ENST00000552909 KIF23Q02241 960 aaPredicted RBP8.89□□□□□ -0.99
LIMA1-216ENST00000552909 NOGQ13253 232 aa8.89□□□□□ -0.99
LIMA1-216ENST00000552909 TTF1Q15361 905 aaPredicted RBP8.89□□□□□ -0.99
LIMA1-216ENST00000552909 KMT5BQ4FZB7 885 aa8.89□□□□□ -0.99
LIMA1-216ENST00000552909 ZSCAN29Q8IWY8 852 aaPredicted RBP8.89□□□□□ -0.99
LIMA1-216ENST00000552909 TEX11Q8IYF3 940 aa8.89□□□□□ -0.99
LIMA1-216ENST00000552909 ZKSCAN4Q969J2 545 aaPredicted RBP8.89□□□□□ -0.99
LIMA1-216ENST00000552909 CCDC102AQ96A19 550 aa8.89□□□□□ -0.99
LIMA1-216ENST00000552909 ZNF532Q9HCE3 1301 aa8.88□□□□□ -0.99
LIMA1-216ENST00000552909 RPAP1Q9BWH6 1393 aaPredicted RBP8.88□□□□□ -0.99
LIMA1-216ENST00000552909 OTOFQ9HC10 1997 aa8.88□□□□□ -0.99
LIMA1-216ENST00000552909 CDK5RAP2Q96SN8 1893 aa8.88□□□□□ -0.99
LIMA1-216ENST00000552909 ENTPD3O75355 529 aa8.88□□□□□ -0.99
LIMA1-216ENST00000552909 BAG3O95817 575 aa8.88□□□□□ -0.99
LIMA1-216ENST00000552909 CHMLP26374 656 aa8.88□□□□□ -0.99
LIMA1-216ENST00000552909 GJA5P36382 358 aa8.88□□□□□ -0.99
LIMA1-216ENST00000552909 IREB2P48200 963 aaKnown RBP8.88□□□□□ -0.99
LIMA1-216ENST00000552909 GIMAP6Q6P9H5 292 aa8.88□□□□□ -0.99
LIMA1-216ENST00000552909 NOL8Q76FK4 1167 aaKnown RBP8.88□□□□□ -0.99
LIMA1-216ENST00000552909 DDX55Q8NHQ9 600 aaKnown RBP eCLIP8.88□□□□□ -0.99
LIMA1-216ENST00000552909 TGFBRAP1Q8WUH2 860 aa8.88□□□□□ -0.99
LIMA1-216ENST00000552909 SLC10A4Q96EP9 437 aa8.88□□□□□ -0.99
LIMA1-216ENST00000552909 CSRNP1Q96S65 589 aa8.88□□□□□ -0.99
LIMA1-216ENST00000552909 CNPY2Q9Y2B0 182 aa8.88□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms