RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 UTYO14607 1347 aa13.16□□□□□ -0.3
VPS29-208ENST00000550267 IFIT1P09914 478 aaKnown RBP13.16□□□□□ -0.3
VPS29-208ENST00000550267 GADL1Q6ZQY3 521 aa13.16□□□□□ -0.3
VPS29-208ENST00000550267 WDR63Q8IWG1 891 aa13.16□□□□□ -0.3
VPS29-208ENST00000550267 PXYLP1Q8TE99 480 aa13.16□□□□□ -0.3
VPS29-208ENST00000550267 PAWRQ96IZ0 340 aaKnown RBP13.16□□□□□ -0.3
VPS29-208ENST00000550267 ZHX2Q9Y6X8 837 aa13.16□□□□□ -0.3
VPS29-208ENST00000550267 CEP290O15078 2479 aa13.15□□□□□ -0.3
VPS29-208ENST00000550267 MGAMO43451 1857 aa13.15□□□□□ -0.3
VPS29-208ENST00000550267 A0A0G2JLL6 359 aaPredicted RBP13.15□□□□□ -0.3
VPS29-208ENST00000550267 TNPO2O14787 897 aaKnown RBP13.15□□□□□ -0.3
VPS29-208ENST00000550267 PRDX5P30044 214 aa13.15□□□□□ -0.3
VPS29-208ENST00000550267 ZEB1P37275 1124 aaPredicted RBP13.15□□□□□ -0.3
VPS29-208ENST00000550267 IRF5Q13568 498 aa13.15□□□□□ -0.3
VPS29-208ENST00000550267 PUM3Q15397 648 aaKnown RBP13.15□□□□□ -0.3
VPS29-208ENST00000550267 FASTKD5Q7L8L6 764 aaKnown RBP13.15□□□□□ -0.3
VPS29-208ENST00000550267 PRRT2Q7Z6L0 340 aaPredicted RBP13.15□□□□□ -0.3
VPS29-208ENST00000550267 SCYL3Q8IZE3 742 aa13.15□□□□□ -0.3
VPS29-208ENST00000550267 WDR66Q8TBY9 1149 aa13.15□□□□□ -0.3
VPS29-208ENST00000550267 DIS3LQ8TF46 1054 aaKnown RBP13.15□□□□□ -0.3
VPS29-208ENST00000550267 IL21Q9HBE4 155 aa13.15□□□□□ -0.3
VPS29-208ENST00000550267 PAK6Q9NQU5 681 aaPredicted RBP13.15□□□□□ -0.3
VPS29-208ENST00000550267 USP40Q9NVE5 1235 aa13.15□□□□□ -0.3
VPS29-208ENST00000550267 KIF16BQ96L93 1317 aa13.14□□□□□ -0.31
VPS29-208ENST00000550267 PHF20L1A8MW92 1017 aa13.14□□□□□ -0.31
VPS29-208ENST00000550267 SLURP2P0DP57 97 aa13.14□□□□□ -0.31
VPS29-208ENST00000550267 PTPRAP18433 802 aa13.14□□□□□ -0.31
VPS29-208ENST00000550267 C7orf61Q8IZ16 206 aa13.14□□□□□ -0.31
VPS29-208ENST00000550267 MTRQ99707 1265 aa13.14□□□□□ -0.31
VPS29-208ENST00000550267 GDF15Q99988 308 aa13.14□□□□□ -0.31
VPS29-208ENST00000550267 PICK1Q9NRD5 415 aa13.14□□□□□ -0.31
VPS29-208ENST00000550267 ATRNL1Q5VV63 1379 aa13.14□□□□□ -0.31
VPS29-208ENST00000550267 SLC5A1P13866 664 aa13.13□□□□□ -0.31
VPS29-208ENST00000550267 CAPN2P17655 700 aa13.13□□□□□ -0.31
VPS29-208ENST00000550267 NUDT18Q6ZVK8 323 aa13.13□□□□□ -0.31
VPS29-208ENST00000550267 Q7L0L9 218 aa13.13□□□□□ -0.31
VPS29-208ENST00000550267 NECAB2Q7Z6G3 386 aa13.13□□□□□ -0.31
VPS29-208ENST00000550267 SMCR8Q8TEV9 937 aaPredicted RBP13.13□□□□□ -0.31
VPS29-208ENST00000550267 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.13□□□□□ -0.31
VPS29-208ENST00000550267 ZMYND8Q9ULU4 1186 aaPredicted RBP13.13□□□□□ -0.31
VPS29-208ENST00000550267 AFG3L2Q9Y4W6 797 aa13.13□□□□□ -0.31
VPS29-208ENST00000550267 BMP8BP34820 402 aa13.12□□□□□ -0.31
VPS29-208ENST00000550267 RGS3P49796 1198 aa13.12□□□□□ -0.31
VPS29-208ENST00000550267 SH3BP5LQ7L8J4 393 aa13.12□□□□□ -0.31
VPS29-208ENST00000550267 CCDC84Q86UT8 332 aaPredicted RBP13.12□□□□□ -0.31
VPS29-208ENST00000550267 DEFB123Q8N688 67 aa13.12□□□□□ -0.31
VPS29-208ENST00000550267 LPIN2Q92539 896 aa13.12□□□□□ -0.31
VPS29-208ENST00000550267 CDHR5Q9HBB8 845 aa13.12□□□□□ -0.31
VPS29-208ENST00000550267 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.12□□□□□ -0.31
VPS29-208ENST00000550267 SLC45A1Q9Y2W3 748 aa13.12□□□□□ -0.31
VPS29-208ENST00000550267 ALPK3Q96L96 1907 aa13.11□□□□□ -0.31
VPS29-208ENST00000550267 TRIM75PA6NK02 468 aa13.11□□□□□ -0.31
VPS29-208ENST00000550267 EYA2O00167 538 aa13.11□□□□□ -0.31
VPS29-208ENST00000550267 LDHBP07195 334 aaKnown RBP13.11□□□□□ -0.31
VPS29-208ENST00000550267 SYN1P17600 705 aa13.11□□□□□ -0.31
VPS29-208ENST00000550267 ZSCAN29Q8IWY8 852 aaPredicted RBP13.11□□□□□ -0.31
VPS29-208ENST00000550267 ANKRD13CQ8N6S4 541 aa13.11□□□□□ -0.31
VPS29-208ENST00000550267 COA7Q96BR5 231 aa13.11□□□□□ -0.31
VPS29-208ENST00000550267 LRRFIP2Q9Y608 721 aaKnown RBP13.11□□□□□ -0.31
VPS29-208ENST00000550267 DOCK2Q92608 1830 aa13.11□□□□□ -0.31
VPS29-208ENST00000550267 ENTPD3O75355 529 aa13.1□□□□□ -0.31
VPS29-208ENST00000550267 RFX5P48382 616 aaPredicted RBP13.1□□□□□ -0.31
VPS29-208ENST00000550267 TREML2Q5T2D2 321 aa13.1□□□□□ -0.31
VPS29-208ENST00000550267 TTC13Q8NBP0 860 aa13.1□□□□□ -0.31
VPS29-208ENST00000550267 IDI2Q9BXS1 227 aa13.1□□□□□ -0.31
VPS29-208ENST00000550267 AGTPBP1Q9UPW5 1226 aa13.1□□□□□ -0.31
VPS29-208ENST00000550267 COL6A3P12111 3177 aa13.1□□□□□ -0.31
VPS29-208ENST00000550267 AK9Q5TCS8 1911 aa13.09□□□□□ -0.31
VPS29-208ENST00000550267 MYH13Q9UKX3 1938 aa13.09□□□□□ -0.31
VPS29-208ENST00000550267 RFX7Q2KHR2 1363 aa13.09□□□□□ -0.31
VPS29-208ENST00000550267 DDTLA6NHG4 134 aaPredicted RBP13.09□□□□□ -0.31
VPS29-208ENST00000550267 MAP3K10Q02779 954 aa13.09□□□□□ -0.31
VPS29-208ENST00000550267 TRIM32Q13049 653 aa13.09□□□□□ -0.31
VPS29-208ENST00000550267 ATG9AQ7Z3C6 839 aa13.09□□□□□ -0.31
VPS29-208ENST00000550267 ANKLE1Q8NAG6 615 aa13.09□□□□□ -0.31
VPS29-208ENST00000550267 STXBP5LQ9Y2K9 1186 aa13.09□□□□□ -0.31
VPS29-208ENST00000550267 SALL1Q9NSC2 1324 aa13.09□□□□□ -0.31
VPS29-208ENST00000550267 GFRA3O60609 400 aa13.08□□□□□ -0.32
VPS29-208ENST00000550267 CTNND1O60716 968 aaKnown RBP13.08□□□□□ -0.32
VPS29-208ENST00000550267 HMGCRP04035 888 aa13.08□□□□□ -0.32
VPS29-208ENST00000550267 MAGEA10P43363 369 aaPredicted RBP13.08□□□□□ -0.32
VPS29-208ENST00000550267 PICALMQ13492 652 aa13.08□□□□□ -0.32
VPS29-208ENST00000550267 FAM110CQ1W6H9 321 aa13.08□□□□□ -0.32
VPS29-208ENST00000550267 LRIT3Q3SXY7 679 aa13.08□□□□□ -0.32
VPS29-208ENST00000550267 PPP1R18Q6NYC8 613 aa13.08□□□□□ -0.32
VPS29-208ENST00000550267 PRKD2Q9BZL6 878 aa13.08□□□□□ -0.32
VPS29-208ENST00000550267 USP44Q9H0E7 712 aa13.08□□□□□ -0.32
VPS29-208ENST00000550267 DDX4Q9NQI0 724 aaKnown RBP13.08□□□□□ -0.32
VPS29-208ENST00000550267 MTMR10Q9NXD2 777 aa13.08□□□□□ -0.32
VPS29-208ENST00000550267 LAMA3Q16787 3333 aa13.08□□□□□ -0.32
VPS29-208ENST00000550267 GAKO14976 1311 aa13.08□□□□□ -0.32
VPS29-208ENST00000550267 DOCK1Q14185 1865 aa13.08□□□□□ -0.32
VPS29-208ENST00000550267 PHIPQ8WWQ0 1821 aa13.07□□□□□ -0.32
VPS29-208ENST00000550267 PHKA1P46020 1223 aa13.07□□□□□ -0.32
VPS29-208ENST00000550267 ATP2B3Q16720 1220 aa13.07□□□□□ -0.32
VPS29-208ENST00000550267 TDHQ8IZJ6 230 aa13.07□□□□□ -0.32
VPS29-208ENST00000550267 SIL1Q9H173 461 aa13.07□□□□□ -0.32
VPS29-208ENST00000550267 C11orf49Q9H6J7 331 aa13.07□□□□□ -0.32
VPS29-208ENST00000550267 MRS2Q9HD23 443 aa13.07□□□□□ -0.32
VPS29-208ENST00000550267 HMX1Q9NP08 348 aaPredicted RBP13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms