RNA–Protein interactions for RNA: ENST00000546744.5

PTCH1-212, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 4,389 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-212ENST00000546744 SPINK5Q9NQ38 1064 aaPredicted RBP14.27□□□□□ -0.12
PTCH1-212ENST00000546744 THEGQ9P2T0 379 aa14.27□□□□□ -0.12
PTCH1-212ENST00000546744 RIPOR2Q9Y4F9 1068 aa14.27□□□□□ -0.12
PTCH1-212ENST00000546744 APOBRQ0VD83 1088 aa14.27□□□□□ -0.12
PTCH1-212ENST00000546744 KLHL14Q9P2G3 628 aa14.27□□□□□ -0.12
PTCH1-212ENST00000546744 POLKQ9UBT6 870 aa14.27□□□□□ -0.12
PTCH1-212ENST00000546744 SBDSQ9Y3A5 250 aaKnown RBP eCLIP14.27□□□□□ -0.12
PTCH1-212ENST00000546744 ABCC4O15439 1325 aa14.27□□□□□ -0.12
PTCH1-212ENST00000546744 DEXIO95424 95 aa14.27□□□□□ -0.13
PTCH1-212ENST00000546744 CMA1P23946 247 aa14.27□□□□□ -0.13
PTCH1-212ENST00000546744 STX17P56962 302 aa14.27□□□□□ -0.13
PTCH1-212ENST00000546744 POSTNQ15063 836 aa14.27□□□□□ -0.13
PTCH1-212ENST00000546744 KRT79Q5XKE5 535 aa14.27□□□□□ -0.13
PTCH1-212ENST00000546744 TCHPQ9BT92 498 aa14.27□□□□□ -0.13
PTCH1-212ENST00000546744 NOC4LQ9BVI4 516 aaKnown RBP14.27□□□□□ -0.13
PTCH1-212ENST00000546744 KIAA0232Q92628 1395 aa14.27□□□□□ -0.13
PTCH1-212ENST00000546744 MTX1Q13505 466 aa14.27□□□□□ -0.13
PTCH1-212ENST00000546744 PPP1R7Q15435 360 aa14.27□□□□□ -0.13
PTCH1-212ENST00000546744 ZNF652Q9Y2D9 606 aa14.27□□□□□ -0.13
PTCH1-212ENST00000546744 EPHB4P54760 987 aa14.26□□□□□ -0.13
PTCH1-212ENST00000546744 NCBP1Q09161 790 aaKnown RBP14.26□□□□□ -0.13
PTCH1-212ENST00000546744 PPP4R3AQ6IN85 833 aa14.26□□□□□ -0.13
PTCH1-212ENST00000546744 PTPRMP28827 1452 aa14.26□□□□□ -0.13
PTCH1-212ENST00000546744 CETN3O15182 167 aa14.26□□□□□ -0.13
PTCH1-212ENST00000546744 BRD2P25440 801 aaKnown RBP14.26□□□□□ -0.13
PTCH1-212ENST00000546744 CLCN6P51797 869 aa14.26□□□□□ -0.13
PTCH1-212ENST00000546744 ATP2B2Q01814 1243 aa14.26□□□□□ -0.13
PTCH1-212ENST00000546744 SPTY2D1Q68D10 685 aaPredicted RBP14.26□□□□□ -0.13
PTCH1-212ENST00000546744 ATP6V0A2Q9Y487 856 aa14.26□□□□□ -0.13
PTCH1-212ENST00000546744 CCDC169A6NNP5 214 aa14.26□□□□□ -0.13
PTCH1-212ENST00000546744 CCT5P48643 541 aa14.26□□□□□ -0.13
PTCH1-212ENST00000546744 RNASELQ05823 741 aaKnown RBP14.26□□□□□ -0.13
PTCH1-212ENST00000546744 ALS2CLQ60I27 953 aa14.26□□□□□ -0.13
PTCH1-212ENST00000546744 UBL4BQ8N7F7 174 aa14.26□□□□□ -0.13
PTCH1-212ENST00000546744 NCAPGQ9BPX3 1015 aa14.26□□□□□ -0.13
PTCH1-212ENST00000546744 TULP4Q9NRJ4 1543 aa14.26□□□□□ -0.13
PTCH1-212ENST00000546744 IFIT1BQ5T764 474 aaKnown RBP14.25□□□□□ -0.13
PTCH1-212ENST00000546744 HS2ST1Q7LGA3 356 aa14.25□□□□□ -0.13
PTCH1-212ENST00000546744 TSPY2A6NKD2 308 aa14.25□□□□□ -0.13
PTCH1-212ENST00000546744 GNA11P29992 359 aa14.25□□□□□ -0.13
PTCH1-212ENST00000546744 HOXA7P31268 230 aaPredicted RBP14.25□□□□□ -0.13
PTCH1-212ENST00000546744 CCDC63Q8NA47 563 aa14.25□□□□□ -0.13
PTCH1-212ENST00000546744 ZNF274Q96GC6 653 aaPredicted RBP14.25□□□□□ -0.13
PTCH1-212ENST00000546744 LRRC2Q9BYS8 371 aa14.25□□□□□ -0.13
PTCH1-212ENST00000546744 Q9H521 79 aa14.25□□□□□ -0.13
PTCH1-212ENST00000546744 MSH6P52701 1360 aa14.25□□□□□ -0.13
PTCH1-212ENST00000546744 TRPC3Q13507 836 aa14.25□□□□□ -0.13
PTCH1-212ENST00000546744 CDC37L1Q7L3B6 337 aa14.25□□□□□ -0.13
PTCH1-212ENST00000546744 RPS6KA1Q15418 735 aa14.25□□□□□ -0.13
PTCH1-212ENST00000546744 DENND2CQ68D51 928 aa14.25□□□□□ -0.13
PTCH1-212ENST00000546744 DZIP1Q86YF9 867 aaKnown RBP14.25□□□□□ -0.13
PTCH1-212ENST00000546744 TRIM4Q9C037 500 aa14.25□□□□□ -0.13
PTCH1-212ENST00000546744 C6orf50Q9HD87 102 aa14.25□□□□□ -0.13
PTCH1-212ENST00000546744 NUTM2BA6NNL0 878 aaPredicted RBP14.24□□□□□ -0.13
PTCH1-212ENST00000546744 NUTM2EB1AL46 878 aaPredicted RBP14.24□□□□□ -0.13
PTCH1-212ENST00000546744 ERCC5P28715 1186 aaPredicted RBP14.24□□□□□ -0.13
PTCH1-212ENST00000546744 MUM1Q2TAK8 710 aa14.24□□□□□ -0.13
PTCH1-212ENST00000546744 MAP7D1Q3KQU3 841 aa14.24□□□□□ -0.13
PTCH1-212ENST00000546744 ANKRD13DQ6ZTN6 518 aa14.24□□□□□ -0.13
PTCH1-212ENST00000546744 VPS52Q8N1B4 723 aa14.24□□□□□ -0.13
PTCH1-212ENST00000546744 GBP7Q8N8V2 638 aaPredicted RBP14.24□□□□□ -0.13
PTCH1-212ENST00000546744 CEP120Q8N960 986 aa14.24□□□□□ -0.13
PTCH1-212ENST00000546744 CNOT10Q9H9A5 744 aaKnown RBP14.24□□□□□ -0.13
PTCH1-212ENST00000546744 ZSWIM6Q9HCJ5 1215 aa14.24□□□□□ -0.13
PTCH1-212ENST00000546744 FBXO3Q9UK99 471 aa14.24□□□□□ -0.13
PTCH1-212ENST00000546744 MYO5BQ9ULV0 1848 aa14.24□□□□□ -0.13
PTCH1-212ENST00000546744 DNM2P50570 870 aa14.24□□□□□ -0.13
PTCH1-212ENST00000546744 UBE3BQ7Z3V4 1068 aa14.24□□□□□ -0.13
PTCH1-212ENST00000546744 CACTINQ8WUQ7 758 aaKnown RBP14.24□□□□□ -0.13
PTCH1-212ENST00000546744 PLEKHG3A1L390 1219 aa14.24□□□□□ -0.13
PTCH1-212ENST00000546744 WDR78Q5VTH9 848 aa14.24□□□□□ -0.13
PTCH1-212ENST00000546744 FBXO38Q6PIJ6 1188 aa14.24□□□□□ -0.13
PTCH1-212ENST00000546744 LDHAL6AQ6ZMR3 332 aa14.24□□□□□ -0.13
PTCH1-212ENST00000546744 SYCP3Q8IZU3 236 aa14.24□□□□□ -0.13
PTCH1-212ENST00000546744 FNBP4Q8N3X1 1017 aaPredicted RBP14.24□□□□□ -0.13
PTCH1-212ENST00000546744 CRNKL1Q9BZJ0 848 aaKnown RBP14.24□□□□□ -0.13
PTCH1-212ENST00000546744 RABGAP1Q9Y3P9 1069 aa14.24□□□□□ -0.13
PTCH1-212ENST00000546744 SEPT2Q15019 361 aa14.23□□□□□ -0.13
PTCH1-212ENST00000546744 TTC6Q86TZ1 520 aa14.23□□□□□ -0.13
PTCH1-212ENST00000546744 ANGEL1Q9UNK9 670 aaKnown RBP14.23□□□□□ -0.13
PTCH1-212ENST00000546744 STK24Q9Y6E0 443 aa14.23□□□□□ -0.13
PTCH1-212ENST00000546744 RGS16O15492 202 aaPredicted RBP14.23□□□□□ -0.13
PTCH1-212ENST00000546744 SUN1O94901 812 aa14.23□□□□□ -0.13
PTCH1-212ENST00000546744 BAG3O95817 575 aa14.23□□□□□ -0.13
PTCH1-212ENST00000546744 SNRPA1P09661 255 aaKnown RBP14.23□□□□□ -0.13
PTCH1-212ENST00000546744 TROVE2P10155 538 aaKnown RBP eCLIP14.23□□□□□ -0.13
PTCH1-212ENST00000546744 CCT6AP40227 531 aaKnown RBP14.23□□□□□ -0.13
PTCH1-212ENST00000546744 MYSM1Q5VVJ2 828 aa14.23□□□□□ -0.13
PTCH1-212ENST00000546744 CSGALNACT2Q8N6G5 542 aa14.23□□□□□ -0.13
PTCH1-212ENST00000546744 CCDC197Q8NCU1 140 aa14.23□□□□□ -0.13
PTCH1-212ENST00000546744 STAG1Q8WVM7 1258 aa14.23□□□□□ -0.13
PTCH1-212ENST00000546744 ARHGEF2Q92974 986 aaKnown RBP14.23□□□□□ -0.13
PTCH1-212ENST00000546744 ZNF521Q96K83 1311 aa14.23□□□□□ -0.13
PTCH1-212ENST00000546744 KCNJ6P48051 423 aa14.23□□□□□ -0.13
PTCH1-212ENST00000546744 MEX3CQ5U5Q3 659 aaKnown RBP14.23□□□□□ -0.13
PTCH1-212ENST00000546744 RETREG2Q8NC44 543 aa14.23□□□□□ -0.13
PTCH1-212ENST00000546744 RUNDC3BQ96NL0 473 aa14.23□□□□□ -0.13
PTCH1-212ENST00000546744 TRIM6Q9C030 488 aaPredicted RBP14.23□□□□□ -0.13
PTCH1-212ENST00000546744 VPS16Q9H269 839 aa14.23□□□□□ -0.13
PTCH1-212ENST00000546744 FER1L4A9Z1Z3 1794 aa14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms