RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 LACTBP83111 547 aaPredicted RBP8.74□□□□□ -1.01
VPS13D-211ENST00000543710 HAUS3Q68CZ6 603 aa8.74□□□□□ -1.01
VPS13D-211ENST00000543710 PPP1R12CQ9BZL4 782 aa8.74□□□□□ -1.01
VPS13D-211ENST00000543710 SPHKAPQ2M3C7 1700 aa8.73□□□□□ -1.01
VPS13D-211ENST00000543710 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.73□□□□□ -1.01
VPS13D-211ENST00000543710 KLF18A0A0U1RQI7 1052 aa8.73□□□□□ -1.01
VPS13D-211ENST00000543710 hCG_1984214I3L0E3 225 aa8.73□□□□□ -1.01
VPS13D-211ENST00000543710 BRD3Q15059 726 aa8.73□□□□□ -1.01
VPS13D-211ENST00000543710 GBP6Q6ZN66 633 aa8.73□□□□□ -1.01
VPS13D-211ENST00000543710 ZNF713Q8N859 430 aaPredicted RBP8.73□□□□□ -1.01
VPS13D-211ENST00000543710 IMPG2Q9BZV3 1241 aa8.73□□□□□ -1.01
VPS13D-211ENST00000543710 A2ML1A8K2U0 1454 aa8.73□□□□□ -1.01
VPS13D-211ENST00000543710 TSPY2A6NKD2 308 aa8.73□□□□□ -1.01
VPS13D-211ENST00000543710 PPFIA4O75335 1185 aa8.73□□□□□ -1.01
VPS13D-211ENST00000543710 EPB41P11171 864 aaKnown RBP8.73□□□□□ -1.01
VPS13D-211ENST00000543710 LMNB1P20700 586 aa8.73□□□□□ -1.01
VPS13D-211ENST00000543710 USP14P54578 494 aa8.73□□□□□ -1.01
VPS13D-211ENST00000543710 ATP11AP98196 1134 aa8.73□□□□□ -1.01
VPS13D-211ENST00000543710 NONOQ15233 471 aaKnown RBP eCLIP8.73□□□□□ -1.01
VPS13D-211ENST00000543710 SH2D4BQ5SQS7 431 aa8.73□□□□□ -1.01
VPS13D-211ENST00000543710 KRT79Q5XKE5 535 aa8.73□□□□□ -1.01
VPS13D-211ENST00000543710 CREB3L3Q68CJ9 461 aa8.73□□□□□ -1.01
VPS13D-211ENST00000543710 KRT26Q7Z3Y9 468 aa8.73□□□□□ -1.01
VPS13D-211ENST00000543710 TMTC1Q8IUR5 882 aa8.73□□□□□ -1.01
VPS13D-211ENST00000543710 PIAS4Q8N2W9 510 aaPredicted RBP8.73□□□□□ -1.01
VPS13D-211ENST00000543710 UBL4BQ8N7F7 174 aa8.73□□□□□ -1.01
VPS13D-211ENST00000543710 PAGR1Q9BTK6 254 aa8.73□□□□□ -1.01
VPS13D-211ENST00000543710 DSCC1Q9BVC3 393 aa8.73□□□□□ -1.01
VPS13D-211ENST00000543710 KDRP35968 1356 aa8.73□□□□□ -1.01
VPS13D-211ENST00000543710 RFX7Q2KHR2 1363 aa8.73□□□□□ -1.01
VPS13D-211ENST00000543710 EBAG9O00559 213 aa8.73□□□□□ -1.01
VPS13D-211ENST00000543710 VIMP08670 466 aaKnown RBP8.73□□□□□ -1.01
VPS13D-211ENST00000543710 AFAP1L1Q8TED9 768 aa8.73□□□□□ -1.01
VPS13D-211ENST00000543710 FAM184BQ9ULE4 1060 aa8.73□□□□□ -1.01
VPS13D-211ENST00000543710 SAMM50Q9Y512 469 aa8.73□□□□□ -1.01
VPS13D-211ENST00000543710 MROH5Q6ZUA9 1318 aa8.73□□□□□ -1.01
VPS13D-211ENST00000543710 KIAA1210Q9ULL0 1709 aa8.73□□□□□ -1.01
VPS13D-211ENST00000543710 GOLGA8QA0A0J9YX86 632 aa8.73□□□□□ -1.01
VPS13D-211ENST00000543710 GOLGA8OA6NCC3 632 aa8.73□□□□□ -1.01
VPS13D-211ENST00000543710 GOLGA8NF8WBI6 632 aa8.73□□□□□ -1.01
VPS13D-211ENST00000543710 GTF2A1P52655 376 aaPredicted RBP8.73□□□□□ -1.01
VPS13D-211ENST00000543710 LIN9Q5TKA1 542 aa8.73□□□□□ -1.01
VPS13D-211ENST00000543710 ZC3H15Q8WU90 426 aaKnown RBP8.73□□□□□ -1.01
VPS13D-211ENST00000543710 RAB3IPQ96QF0 476 aaPredicted RBP8.73□□□□□ -1.01
VPS13D-211ENST00000543710 PPEF1O14829 653 aaPredicted RBP8.72□□□□□ -1.01
VPS13D-211ENST00000543710 N4BP1O75113 896 aaKnown RBP8.72□□□□□ -1.01
VPS13D-211ENST00000543710 HLTFQ14527 1009 aaKnown RBP eCLIP8.72□□□□□ -1.01
VPS13D-211ENST00000543710 FAM177A1Q8N128 213 aaPredicted RBP8.72□□□□□ -1.01
VPS13D-211ENST00000543710 GAS2L1Q99501 681 aaPredicted RBP8.72□□□□□ -1.01
VPS13D-211ENST00000543710 OVOS2A0A0G2JMS6 1433 aa8.72□□□□□ -1.01
VPS13D-211ENST00000543710 OVOS2A0A0J9YW53 1432 aa8.72□□□□□ -1.01
VPS13D-211ENST00000543710 RGS12O14924 1447 aa8.72□□□□□ -1.01
VPS13D-211ENST00000543710 OVOS2Q6IE36 1432 aa8.72□□□□□ -1.01
VPS13D-211ENST00000543710 TMCO5BA8MYB1 307 aa8.72□□□□□ -1.01
VPS13D-211ENST00000543710 ACTN4O43707 911 aaKnown RBP8.72□□□□□ -1.01
VPS13D-211ENST00000543710 IGHDP01880 384 aa8.72□□□□□ -1.01
VPS13D-211ENST00000543710 BRINP3Q76B58 766 aa8.72□□□□□ -1.01
VPS13D-211ENST00000543710 A0A1W2PP64 1363 aa8.72□□□□□ -1.01
VPS13D-211ENST00000543710 H0YCG3 227 aa8.72□□□□□ -1.01
VPS13D-211ENST00000543710 BBOX1O75936 387 aa8.72□□□□□ -1.01
VPS13D-211ENST00000543710 LMAN1P49257 510 aa8.72□□□□□ -1.01
VPS13D-211ENST00000543710 SEMA3FQ13275 785 aa8.72□□□□□ -1.01
VPS13D-211ENST00000543710 SKIDA1Q1XH10 827 aa8.72□□□□□ -1.01
VPS13D-211ENST00000543710 DNAJC21Q5F1R6 531 aaKnown RBP8.72□□□□□ -1.01
VPS13D-211ENST00000543710 MAP3K21Q5TCX8 1036 aa8.72□□□□□ -1.01
VPS13D-211ENST00000543710 SV2BQ7L1I2 683 aa8.72□□□□□ -1.01
VPS13D-211ENST00000543710 SRGAP1Q7Z6B7 1085 aa8.72□□□□□ -1.01
VPS13D-211ENST00000543710 GRK7Q8WTQ7 553 aa8.72□□□□□ -1.01
VPS13D-211ENST00000543710 RUBCNQ92622 972 aa8.72□□□□□ -1.01
VPS13D-211ENST00000543710 C16orf45Q96MC5 204 aaPredicted RBP8.72□□□□□ -1.01
VPS13D-211ENST00000543710 MINDY4BA8MYZ0 360 aa8.72□□□□□ -1.01
VPS13D-211ENST00000543710 NMIQ13287 307 aaPredicted RBP8.72□□□□□ -1.01
VPS13D-211ENST00000543710 C1orf228Q6PIY5 440 aa8.72□□□□□ -1.01
VPS13D-211ENST00000543710 BBOF1Q8ND07 529 aa8.72□□□□□ -1.01
VPS13D-211ENST00000543710 SLC4A4Q9Y6R1 1079 aa8.72□□□□□ -1.01
VPS13D-211ENST00000543710 MED14O60244 1454 aa8.72□□□□□ -1.01
VPS13D-211ENST00000543710 CBX1P83916 185 aa8.71□□□□□ -1.01
VPS13D-211ENST00000543710 ATP2B3Q16720 1220 aa8.71□□□□□ -1.01
VPS13D-211ENST00000543710 MYRIPQ8NFW9 859 aa8.71□□□□□ -1.01
VPS13D-211ENST00000543710 GOLGA5Q8TBA6 731 aa8.71□□□□□ -1.01
VPS13D-211ENST00000543710 DAAM1Q9Y4D1 1078 aa8.71□□□□□ -1.01
VPS13D-211ENST00000543710 PTPRTO14522 1441 aa8.71□□□□□ -1.01
VPS13D-211ENST00000543710 PTPRMP28827 1452 aa8.71□□□□□ -1.01
VPS13D-211ENST00000543710 MBD5Q9P267 1494 aa8.71□□□□□ -1.01
VPS13D-211ENST00000543710 ZCCHC11Q5TAX3 1644 aaKnown RBP8.71□□□□□ -1.01
VPS13D-211ENST00000543710 ERICH4A6NGS2 130 aa8.71□□□□□ -1.01
VPS13D-211ENST00000543710 AKR1B10O60218 316 aa8.71□□□□□ -1.01
VPS13D-211ENST00000543710 STK10O94804 968 aaKnown RBP8.71□□□□□ -1.01
VPS13D-211ENST00000543710 KRT25Q7Z3Z0 450 aa8.71□□□□□ -1.01
VPS13D-211ENST00000543710 CACNA2D3Q8IZS8 1091 aa8.71□□□□□ -1.01
VPS13D-211ENST00000543710 MYO1AQ9UBC5 1043 aa8.71□□□□□ -1.01
VPS13D-211ENST00000543710 RPAP1Q9BWH6 1393 aaPredicted RBP8.71□□□□□ -1.01
VPS13D-211ENST00000543710 LAD1O00515 517 aa8.71□□□□□ -1.02
VPS13D-211ENST00000543710 CHMLP26374 656 aa8.71□□□□□ -1.02
VPS13D-211ENST00000543710 MAN1A1P33908 653 aa8.71□□□□□ -1.02
VPS13D-211ENST00000543710 TAF1CQ15572 869 aaPredicted RBP8.71□□□□□ -1.02
VPS13D-211ENST00000543710 LMNTD2Q8IXW0 634 aa8.71□□□□□ -1.02
VPS13D-211ENST00000543710 MICALL1Q8N3F8 863 aa8.71□□□□□ -1.02
VPS13D-211ENST00000543710 CDK12Q9NYV4 1490 aaPredicted RBP8.71□□□□□ -1.02
VPS13D-211ENST00000543710 FAM13AO94988 1023 aa8.71□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms