RNA–Protein interactions for RNA: ENST00000543123.1

RTN3-212, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-212ENST00000543123 IRF5Q13568 498 aa15.94■□□□□ 0.14
RTN3-212ENST00000543123 MTMR2Q13614 643 aa15.94■□□□□ 0.14
RTN3-212ENST00000543123 TTC6Q86TZ1 520 aa15.94■□□□□ 0.14
RTN3-212ENST00000543123 PXYLP1Q8TE99 480 aa15.94■□□□□ 0.14
RTN3-212ENST00000543123 EHD4Q9H223 541 aa15.94■□□□□ 0.14
RTN3-212ENST00000543123 IL1RAPL2Q9NP60 686 aa15.94■□□□□ 0.14
RTN3-212ENST00000543123 ZBTB40Q9NUA8 1239 aa15.94■□□□□ 0.14
RTN3-212ENST00000543123 RCAN3Q9UKA8 241 aa15.94■□□□□ 0.14
RTN3-212ENST00000543123 ZBTB21Q9ULJ3 1066 aa15.94■□□□□ 0.14
RTN3-212ENST00000543123 COG6Q9Y2V7 657 aa15.94■□□□□ 0.14
RTN3-212ENST00000543123 USP17L10C9JJH3 530 aa15.93■□□□□ 0.14
RTN3-212ENST00000543123 GJB1P08034 283 aa15.93■□□□□ 0.14
RTN3-212ENST00000543123 CCL5P13501 91 aa15.93■□□□□ 0.14
RTN3-212ENST00000543123 FLT3LGP49771 235 aa15.93■□□□□ 0.14
RTN3-212ENST00000543123 RRP1BQ14684 758 aaKnown RBP15.93■□□□□ 0.14
RTN3-212ENST00000543123 PPIL4Q8WUA2 492 aaKnown RBP eCLIP15.93■□□□□ 0.14
RTN3-212ENST00000543123 RNF208Q9H0X6 261 aa15.93■□□□□ 0.14
RTN3-212ENST00000543123 ASCC2Q9H1I8 757 aaPredicted RBP15.93■□□□□ 0.14
RTN3-212ENST00000543123 DNAJC18Q9H819 358 aa15.93■□□□□ 0.14
RTN3-212ENST00000543123 SERPINB13Q9UIV8 391 aa15.93■□□□□ 0.14
RTN3-212ENST00000543123 APBB1O00213 710 aa15.92■□□□□ 0.14
RTN3-212ENST00000543123 GDF11O95390 407 aa15.92■□□□□ 0.14
RTN3-212ENST00000543123 GJA8P48165 433 aa15.92■□□□□ 0.14
RTN3-212ENST00000543123 MTFR1Q15390 333 aa15.92■□□□□ 0.14
RTN3-212ENST00000543123 GTF3C2Q8WUA4 911 aaPredicted RBP15.92■□□□□ 0.14
RTN3-212ENST00000543123 CRNKL1Q9BZJ0 848 aaKnown RBP15.92■□□□□ 0.14
RTN3-212ENST00000543123 ANTXR1Q9H6X2 564 aa15.92■□□□□ 0.14
RTN3-212ENST00000543123 GABRQQ9UN88 632 aa15.92■□□□□ 0.14
RTN3-212ENST00000543123 NDUFB9Q9Y6M9 179 aa15.92■□□□□ 0.14
RTN3-212ENST00000543123 MYH1P12882 1939 aa15.92■□□□□ 0.14
RTN3-212ENST00000543123 MAGEB6P1A0A0J9YX57 407 aa15.91■□□□□ 0.14
RTN3-212ENST00000543123 HOXA7P31268 230 aaPredicted RBP15.91■□□□□ 0.14
RTN3-212ENST00000543123 SLC9C2Q5TAH2 1124 aa15.91■□□□□ 0.14
RTN3-212ENST00000543123 FEZ1Q99689 392 aa15.91■□□□□ 0.14
RTN3-212ENST00000543123 TAOK2Q9UL54 1235 aa15.91■□□□□ 0.14
RTN3-212ENST00000543123 INHAP05111 366 aa15.9■□□□□ 0.14
RTN3-212ENST00000543123 PDE3AQ14432 1141 aa15.9■□□□□ 0.14
RTN3-212ENST00000543123 TATDN1Q6P1N9 297 aa15.9■□□□□ 0.14
RTN3-212ENST00000543123 DNAJC2Q99543 621 aaKnown RBP15.9■□□□□ 0.14
RTN3-212ENST00000543123 HTATIP2Q9BUP3 242 aa15.9■□□□□ 0.14
RTN3-212ENST00000543123 MORF4L1Q9UBU8 362 aa15.9■□□□□ 0.14
RTN3-212ENST00000543123 GOLIM4O00461 696 aa15.89■□□□□ 0.13
RTN3-212ENST00000543123 GH2P01242 217 aa15.89■□□□□ 0.13
RTN3-212ENST00000543123 POLR3DP05423 398 aaPredicted RBP15.89■□□□□ 0.13
RTN3-212ENST00000543123 ELNP15502 786 aa15.89■□□□□ 0.13
RTN3-212ENST00000543123 PDE6AP16499 860 aa15.89■□□□□ 0.13
RTN3-212ENST00000543123 USP14P54578 494 aa15.89■□□□□ 0.13
RTN3-212ENST00000543123 CERKLQ49MI3 558 aaPredicted RBP15.89■□□□□ 0.13
RTN3-212ENST00000543123 USP17L2Q6R6M4 530 aa15.89■□□□□ 0.13
RTN3-212ENST00000543123 SHISA4Q96DD7 197 aa15.89■□□□□ 0.13
RTN3-212ENST00000543123 RIOK1Q9BRS2 568 aaKnown RBP15.89■□□□□ 0.13
RTN3-212ENST00000543123 DDX24Q9GZR7 859 aaKnown RBP eCLIP15.89■□□□□ 0.13
RTN3-212ENST00000543123 CABP5Q9NP86 173 aa15.89■□□□□ 0.13
RTN3-212ENST00000543123 HERVK_113P62684 666 aa15.88■□□□□ 0.13
RTN3-212ENST00000543123 ABCB5Q2M3G0 1257 aa15.88■□□□□ 0.13
RTN3-212ENST00000543123 CCAR1Q8IX12 1150 aaKnown RBP15.88■□□□□ 0.13
RTN3-212ENST00000543123 SIRT2Q8IXJ6 389 aa15.88■□□□□ 0.13
RTN3-212ENST00000543123 GPRC5AQ8NFJ5 357 aa15.88■□□□□ 0.13
RTN3-212ENST00000543123 U2AF1L4Q8WU68 220 aaKnown RBP15.88■□□□□ 0.13
RTN3-212ENST00000543123 SOCS4Q8WXH5 440 aa15.88■□□□□ 0.13
RTN3-212ENST00000543123 UNC93B1Q9H1C4 597 aa15.88■□□□□ 0.13
RTN3-212ENST00000543123 NAV1Q8NEY1 1877 aa15.88■□□□□ 0.13
RTN3-212ENST00000543123 ZNF532Q9HCE3 1301 aa15.88■□□□□ 0.13
RTN3-212ENST00000543123 HMGCRP04035 888 aa15.87■□□□□ 0.13
RTN3-212ENST00000543123 MAPK4P31152 587 aa15.87■□□□□ 0.13
RTN3-212ENST00000543123 JAG1P78504 1218 aa15.87■□□□□ 0.13
RTN3-212ENST00000543123 RAB3GAP1Q15042 981 aa15.87■□□□□ 0.13
RTN3-212ENST00000543123 C12orf42Q96LP6 360 aa15.87■□□□□ 0.13
RTN3-212ENST00000543123 BCL11AQ9H165 835 aa15.87■□□□□ 0.13
RTN3-212ENST00000543123 PAG1Q9NWQ8 432 aa15.87■□□□□ 0.13
RTN3-212ENST00000543123 DDX60LQ5H9U9 1706 aaKnown RBP15.87■□□□□ 0.13
RTN3-212ENST00000543123 FARP2O94887 1054 aaPredicted RBP15.86■□□□□ 0.13
RTN3-212ENST00000543123 SGPL1O95470 568 aa15.86■□□□□ 0.13
RTN3-212ENST00000543123 ATP5JP18859 108 aa15.86■□□□□ 0.13
RTN3-212ENST00000543123 AMOTL1Q8IY63 956 aa15.86■□□□□ 0.13
RTN3-212ENST00000543123 TRMT44Q8IYL2 757 aaKnown RBP15.86■□□□□ 0.13
RTN3-212ENST00000543123 DDRGK1Q96HY6 314 aa15.86■□□□□ 0.13
RTN3-212ENST00000543123 P2RX7Q99572 595 aaKnown RBP15.86■□□□□ 0.13
RTN3-212ENST00000543123 LRRCC1Q9C099 1032 aa15.86■□□□□ 0.13
RTN3-212ENST00000543123 KIAA1683Q9H0B3 1180 aa15.86■□□□□ 0.13
RTN3-212ENST00000543123 CWC22Q9HCG8 908 aaKnown RBP15.86■□□□□ 0.13
RTN3-212ENST00000543123 MCM9Q9NXL9 1143 aa15.86■□□□□ 0.13
RTN3-212ENST00000543123 CEP290O15078 2479 aa15.85■□□□□ 0.13
RTN3-212ENST00000543123 USP17L15C9J2P7 530 aa15.85■□□□□ 0.13
RTN3-212ENST00000543123 USP17L13C9JLJ4 530 aa15.85■□□□□ 0.13
RTN3-212ENST00000543123 USP17L11C9JVI0 530 aa15.85■□□□□ 0.13
RTN3-212ENST00000543123 USP17L18D6R9N7 530 aa15.85■□□□□ 0.13
RTN3-212ENST00000543123 USP17L22D6RA61 530 aa15.85■□□□□ 0.13
RTN3-212ENST00000543123 USP17L17D6RBQ6 530 aa15.85■□□□□ 0.13
RTN3-212ENST00000543123 USP17L19D6RCP7 530 aa15.85■□□□□ 0.13
RTN3-212ENST00000543123 USP17L20D6RJB6 530 aa15.85■□□□□ 0.13
RTN3-212ENST00000543123 TFRCP02786 760 aaKnown RBP15.85■□□□□ 0.13
RTN3-212ENST00000543123 USP17L24Q0WX57 530 aa15.85■□□□□ 0.13
RTN3-212ENST00000543123 SHROOM1Q2M3G4 852 aaPredicted RBP15.85■□□□□ 0.13
RTN3-212ENST00000543123 HABP4Q5JVS0 413 aaKnown RBP15.85■□□□□ 0.13
RTN3-212ENST00000543123 ZSCAN25Q6NSZ9 544 aa15.85■□□□□ 0.13
RTN3-212ENST00000543123 DPF3Q92784 378 aa15.85■□□□□ 0.13
RTN3-212ENST00000543123 HAUS7Q99871 368 aa15.85■□□□□ 0.13
RTN3-212ENST00000543123 PAK6Q9NQU5 681 aaPredicted RBP15.85■□□□□ 0.13
RTN3-212ENST00000543123 EMILIN3Q9NT22 766 aa15.85■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms